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Light1992

mpiblast log error

Light1992
Jul 23rd, 2019
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  1. (base) [genomica@localhost trascrittomiricostruiti]$ ./blast_test_senzapunti.sh
  2. [blastall] WARNING: Unable to open OLEAexcel_senzapunti.fa.pin
  3. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.009.pin
  4. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.009.pin
  5. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faZrrR45.pin
  6. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.001.pin
  7. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.015.pin
  8. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.009.pin
  9. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.015.pin
  10. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.001.pin
  11. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa3QVS45.pin
  12. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faD6GM45.pin
  13. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.009.pin
  14. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faZrrR45.pin
  15. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.015.pin
  16. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.015.pin
  17. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.004.pin
  18. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.001.pin
  19. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.faZrrR45 was not found or does not exist
  20. 10 0.184157 Bailing out with signal -1
  21. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.001.pin
  22. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa3QVS45.pin
  23. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.fa3QVS45 was not found or does not exist
  24. 2 [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faD6GM45.pin
  25. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.faD6GM45 was not found or does not exist
  26. 16 0.184298 Bailing out with signal -1
  27. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.014.pin
  28. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.004.pin
  29. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faVjkV45.pin
  30. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.004.pin
  31. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.007.pin
  32. --------------------------------------------------------------------------
  33. MPI_ABORT was invoked on rank 10 in communicator MPI_COMM_WORLD
  34. with errorcode 0.
  35.  
  36. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
  37. You may or may not see output from other processes, depending on
  38. exactly when Open MPI kills them.
  39. --------------------------------------------------------------------------
  40. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.003.pin
  41. 0.184445 Bailing out with signal -1
  42. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.006.pin
  43. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.006.pin
  44. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fat2WJY5.pin
  45. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.004.pin
  46. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faVjkV45.pin
  47. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.faVjkV45 was not found or does not exist
  48. 5 0.185077 Bailing out with signal -1
  49. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.010.pin
  50. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.010.pin
  51. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faj2FtY5.pin
  52. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.010.pin
  53. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.014.pin
  54. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faRqKXY5.pin
  55. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.014.pin
  56. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.014.pin
  57. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.007.pin
  58. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa3rsG45.pin
  59. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.007.pin
  60. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faRqKXY5.pin
  61. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.faRqKXY5 was not found or does not exist
  62. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.003.pin
  63. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.007.pin
  64. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa3rsG45.pin
  65. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.fa3rsG45 was not found or does not exist
  66. 8 0.185847 Bailing out with signal -1
  67. 15 0.185248 Bailing out with signal -1
  68. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.006.pin
  69. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.006.pin
  70. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fat2WJY5.pin
  71. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.fat2WJY5 was not found or does not exist
  72. 7 0.186003 Bailing out with signal -1
  73. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.010.pin
  74. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faj2FtY5.pin
  75. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.faj2FtY5 was not found or does not exist
  76. 11 0.185726 Bailing out with signal -1
  77. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faCyP145.pin
  78. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.003.pin
  79. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.003.pin
  80. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faCyP145.pin
  81. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.faCyP145 was not found or does not exist
  82. 4 0.186533 Bailing out with signal -1
  83. 4 0.190114 Bailing out with signal 15
  84. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.013.pin
  85. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.013.pin
  86. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa39j2X5.pin
  87. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.013.pin
  88. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.013.pin
  89. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa39j2X5.pin
  90. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.fa39j2X5 was not found or does not exist
  91. 14 0.187244 Bailing out with signal -1
  92. 14 0.189993 Bailing out with signal 15
  93. 0 0.189918 Bailing out with signal 15
  94. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.000.pin
  95. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.000.pin
  96. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fak1HCY5.pin
  97. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.000.pin
  98. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.000.pin
  99. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fak1HCY5.pin
  100. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.fak1HCY5 was not found or does not exist
  101. 1 0.187604 Bailing out with signal -1
  102. 1 0.189386 Bailing out with signal 15
  103. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.002.pin
  104. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.002.pin
  105. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa2GdAY5.pin
  106. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.002.pin
  107. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.002.pin
  108. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa2GdAY5.pin
  109. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.fa2GdAY5 was not found or does not exist
  110. 3 0.188398 Bailing out with signal -1
  111. 3 0.190088 Bailing out with signal 15
  112. 11 0.189786 Bailing out with signal 15
  113. 8 0.190054 Bailing out with signal 15
  114. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.005.pin
  115. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.005.pin
  116. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faivr0X5.pin
  117. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.005.pin
  118. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.005.pin
  119. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faivr0X5.pin
  120. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.faivr0X5 was not found or does not exist
  121. 6 0.187333 Bailing out with signal -1
  122. 6 0.189712 Bailing out with signal 15
  123. 2 0.189646 Bailing out with signal 15
  124. 15 0.189669 Bailing out with signal 15
  125. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.008.pin
  126. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.008.pin
  127. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa9fqSY5.pin
  128. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.008.pin
  129. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.008.pin
  130. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa9fqSY5.pin
  131. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.fa9fqSY5 was not found or does not exist
  132. 9 0.187521 Bailing out with signal -1
  133. 9 0.190119 Bailing out with signal 15
  134. 49 0.189876 Bailing out with signal 15
  135. 5 0.189797 Bailing out with signal 15
  136. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.011.pin
  137. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.011.pin
  138. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faz1R1Y5.pin
  139. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.011.pin
  140. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.011.pin
  141. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.faz1R1Y5.pin
  142. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.faz1R1Y5 was not found or does not exist
  143. 12 0.187696 Bailing out with signal -1
  144. 12 0.190178 Bailing out with signal 15
  145. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.012.pin
  146. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.012.pin
  147. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa1srSY5.pin
  148. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.012.pin
  149. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa.012.pin
  150. [blastall] WARNING: TRINITY_DN29239_c0_g1_i1: Unable to open OLEAexcel_senzapunti.fa1srSY5.pin
  151. [blastall] FATAL ERROR: TRINITY_DN29239_c0_g1_i1: Database /home/genomica/DATA/Databases/BLAST/mpiblast/OLEAexcel_senzapunti.fa1srSY5 was not found or does not exist
  152. 13 0.187064 Bailing out with signal -1
  153. 13 0.18964 Bailing out with signal 15
  154. 7 0.190002 Bailing out with signal 15
  155. 17 0.189795 Bailing out with signal 15
  156. 18 0.190292 Bailing out with signal 15
  157. 19 0.190297 Bailing out with signal 15
  158. 20 0.190261 Bailing out with signal 15
  159. 21 0.189976 Bailing out with signal 15
  160. 22 0.189639 Bailing out with signal 15
  161. 23 0.189598 Bailing out with signal 15
  162. 24 0.190138 Bailing out with signal 15
  163. 25 0.189508 Bailing out with signal 15
  164. 26 0.190221 Bailing out with signal 15
  165. 27 0.189611 Bailing out with signal 15
  166. 28 0.189673 Bailing out with signal 15
  167. 29 0.190194 Bailing out with signal 15
  168. 30 0.190289 Bailing out with signal 15
  169. 31 0.189895 Bailing out with signal 15
  170. 32 0.189957 Bailing out with signal 15
  171. 33 0.19005 Bailing out with signal 15
  172. 34 0.190165 Bailing out with signal 15
  173. 35 0.189998 Bailing out with signal 15
  174. 36 0.190213 Bailing out with signal 15
  175. 37 0.189681 Bailing out with signal 15
  176. 38 0.18997 Bailing out with signal 15
  177. 39 0.189863 Bailing out with signal 15
  178. 40 0.189869 Bailing out with signal 15
  179. 41 0.190117 Bailing out with signal 15
  180. 42 0.18976 Bailing out with signal 15
  181. 43 0.190302 Bailing out with signal 15
  182. 44 0.190422 Bailing out with signal 15
  183. 45 0.190245 Bailing out with signal 15
  184. 46 0.190183 Bailing out with signal 15
  185. 47 0.190133 Bailing out with signal 15
  186. 48 0.189948 Bailing out with signal 15
  187. [localhost.localdomain:35349] 63 more processes have sent help message help-mpi-api.txt / mpi-abort
  188. [localhost.localdomain:35349] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
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