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misnomer001

dali_mlba = dali_eba+sintashta+okunevo

misnomer001
Apr 20th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1640580204
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Kazakhstan_MLBA_Dali
  11. Kazakhstan_Dali_EBA
  12. Russia_MLBA_Sintashta
  13. Russia_BA_Okunevo.SG
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Russia_Steppe_Eneolithic
  26. Kazakhstan_Kumsay_EBA
  27. Botai
  28.  
  29. 0 Kazakhstan_MLBA_Dali 3
  30. 1 Kazakhstan_Dali_EBA 1
  31. 2 Russia_MLBA_Sintashta 36
  32. 3 Russia_BA_Okunevo.SG 16
  33. 4 Cameroon_SMA.DG 1
  34. 5 EEHG 5
  35. 6 WSHG 3
  36. 7 PPN 11
  37. 8 WEHG 33
  38. 9 Anatolia_N 22
  39. 10 Iran_GanjDareh_N 8
  40. 11 Russia_UstBelaya_Angara 8
  41. 12 ONG.SG 6
  42. 13 Russia_Steppe_Eneolithic 3
  43. 14 Kazakhstan_Kumsay_EBA 4
  44. 15 Botai 2
  45. jackknife block size: 0.050
  46. snps: 1150510 indivs: 162
  47. number of blocks for block jackknife: 713
  48. ## ncols: 1150510
  49. coverage: Kazakhstan_MLBA_Dali 931588
  50. coverage: Kazakhstan_Dali_EBA 774708
  51. coverage: Russia_MLBA_Sintashta 1128449
  52. coverage: Russia_BA_Okunevo.SG 1149974
  53. coverage: Cameroon_SMA.DG 1140138
  54. coverage: EEHG 1052093
  55. coverage: WSHG 858019
  56. coverage: PPN 847771
  57. coverage: WEHG 1140599
  58. coverage: Anatolia_N 1139031
  59. coverage: Iran_GanjDareh_N 1057358
  60. coverage: Russia_UstBelaya_Angara 1072574
  61. coverage: ONG.SG 1143397
  62. coverage: Russia_Steppe_Eneolithic 1008226
  63. coverage: Kazakhstan_Kumsay_EBA 960872
  64. coverage: Botai 926654
  65. dof (jackknife): 618.739
  66. numsnps used: 1150510
  67. codimension 1
  68. f4info:
  69. f4rank: 2 dof: 9 chisq: 12.931 tail: 0.165767809 dofdiff: 11 chisqdiff: -12.931 taildiff: 1
  70. B:
  71. scale 1.000 1.000
  72. EEHG 0.224 1.066
  73. WSHG 1.185 0.950
  74. PPN -1.057 0.888
  75. WEHG -1.051 1.179
  76. Anatolia_N -1.291 1.068
  77. Iran_GanjDareh_N -0.381 0.946
  78. Russia_UstBelaya_Angara 1.689 -1.095
  79. ONG.SG 0.707 -0.544
  80. Russia_Steppe_Eneolithic -0.262 1.289
  81. Kazakhstan_Kumsay_EBA 0.677 1.138
  82. Botai 1.277 0.546
  83. A:
  84. scale 365.306 724.333
  85. Kazakhstan_Dali_EBA 1.330 1.336
  86. Russia_MLBA_Sintashta -0.397 -0.234
  87. Russia_BA_Okunevo.SG 1.036 -1.078
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 12.931 taildiff: 0.165767809
  93. B:
  94. scale 273.362 984.337 275.935
  95. EEHG 0.799 -0.683 -0.287
  96. WSHG 1.854 -1.146 0.656
  97. PPN -0.507 0.962 -1.158
  98. WEHG -0.370 0.800 -1.295
  99. Anatolia_N -0.649 1.142 -1.420
  100. Iran_GanjDareh_N 0.138 0.065 -0.692
  101. Russia_UstBelaya_Angara 1.238 -1.297 1.815
  102. ONG.SG 0.432 -0.785 0.727
  103. Russia_Steppe_Eneolithic 0.425 -0.229 -0.761
  104. Kazakhstan_Kumsay_EBA 1.304 -1.066 0.070
  105. Botai 1.577 -1.691 0.752
  106. A:
  107. scale 1.732 1.732 1.732
  108. Kazakhstan_Dali_EBA 1.732 0.000 0.000
  109. Russia_MLBA_Sintashta 0.000 1.732 0.000
  110. Russia_BA_Okunevo.SG 0.000 0.000 1.732
  111.  
  112.  
  113. best coefficients: 0.181 0.760 0.059
  114. Jackknife mean: 0.180595174 0.759903884 0.059500942
  115. std. errors: 0.035 0.020 0.027
  116.  
  117. error covariance (* 1,000,000)
  118. 1207 -438 -769
  119. -438 385 53
  120. -769 53 717
  121.  
  122.  
  123. summ: Kazakhstan_MLBA_Dali 3 0.165768 0.181 0.760 0.060 1207 -438 -769 385 53 ...
  124. 717
  125.  
  126. fixed pat wt dof chisq tail prob
  127. 000 0 9 12.931 0.165768 0.181 0.760 0.059
  128. 001 1 10 20.485 0.0249818 0.244 0.756 0.000
  129. 010 1 10 385.657 0 2.234 0.000 -1.234 infeasible
  130. 100 1 10 40.293 1.50443e-05 0.000 0.823 0.177
  131. 011 2 11 672.063 0 1.000 0.000 0.000
  132. 101 2 11 165.147 1.17413e-29 0.000 1.000 0.000
  133. 110 2 11 1774.576 0 0.000 0.000 1.000
  134. best pat: 000 0.165768 - -
  135. best pat: 100 1.50443e-05 chi(nested): 27.362 p-value for nested model: 1.68699e-07
  136. best pat: 101 1.17413e-29 chi(nested): 124.854 p-value for nested model: 5.47741e-29
  137.  
  138. coeffs: 0.181 0.760 0.059
  139.  
  140. ## dscore:: f_4(Base, Fit, Rbase, right2)
  141. ## genstat:: f_4(Base, Fit, right1, right2)
  142.  
  143. details: Kazakhstan_Dali_EBA EEHG 0.002924 7.162158
  144. details: Russia_MLBA_Sintashta EEHG -0.000694 -2.378280
  145. details: Russia_BA_Okunevo.SG EEHG -0.001039 -3.019438
  146. dscore: EEHG f4: -0.000060 Z: -0.214136
  147.  
  148. details: Kazakhstan_Dali_EBA WSHG 0.006783 14.614002
  149. details: Russia_MLBA_Sintashta WSHG -0.001164 -4.047367
  150. details: Russia_BA_Okunevo.SG WSHG 0.002379 6.962847
  151. dscore: WSHG f4: 0.000483 Z: 1.721926
  152.  
  153. details: Kazakhstan_Dali_EBA PPN -0.001853 -4.734235
  154. details: Russia_MLBA_Sintashta PPN 0.000977 3.920588
  155. details: Russia_BA_Okunevo.SG PPN -0.004196 -14.290828
  156. dscore: PPN f4: 0.000158 Z: 0.637613
  157.  
  158. details: Kazakhstan_Dali_EBA WEHG -0.001355 -3.600850
  159. details: Russia_MLBA_Sintashta WEHG 0.000813 3.045840
  160. details: Russia_BA_Okunevo.SG WEHG -0.004695 -15.044944
  161. dscore: WEHG f4: 0.000094 Z: 0.367629
  162.  
  163. details: Kazakhstan_Dali_EBA Anatolia_N -0.002374 -6.815401
  164. details: Russia_MLBA_Sintashta Anatolia_N 0.001160 4.777043
  165. details: Russia_BA_Okunevo.SG Anatolia_N -0.005146 -18.334408
  166. dscore: Anatolia_N f4: 0.000147 Z: 0.623301
  167.  
  168. details: Kazakhstan_Dali_EBA Iran_GanjDareh_N 0.000504 1.445247
  169. details: Russia_MLBA_Sintashta Iran_GanjDareh_N 0.000066 0.260325
  170. details: Russia_BA_Okunevo.SG Iran_GanjDareh_N -0.002508 -8.565104
  171. dscore: Iran_GanjDareh_N f4: -0.000007 Z: -0.029439
  172.  
  173. details: Kazakhstan_Dali_EBA Russia_UstBelaya_Angara 0.004528 11.733488
  174. details: Russia_MLBA_Sintashta Russia_UstBelaya_Angara -0.001318 -4.877620
  175. details: Russia_BA_Okunevo.SG Russia_UstBelaya_Angara 0.006579 21.205219
  176. dscore: Russia_UstBelaya_Angara f4: 0.000208 Z: 0.788827
  177.  
  178. details: Kazakhstan_Dali_EBA ONG.SG 0.001581 4.361656
  179. details: Russia_MLBA_Sintashta ONG.SG -0.000798 -3.063875
  180. details: Russia_BA_Okunevo.SG ONG.SG 0.002634 8.989238
  181. dscore: ONG.SG f4: -0.000164 Z: -0.659959
  182.  
  183. details: Kazakhstan_Dali_EBA Russia_Steppe_Eneolithic 0.001554 4.070449
  184. details: Russia_MLBA_Sintashta Russia_Steppe_Eneolithic -0.000233 -0.881190
  185. details: Russia_BA_Okunevo.SG Russia_Steppe_Eneolithic -0.002757 -8.915993
  186. dscore: Russia_Steppe_Eneolithic f4: -0.000059 Z: -0.233253
  187.  
  188. details: Kazakhstan_Dali_EBA Kazakhstan_Kumsay_EBA 0.004772 11.885168
  189. details: Russia_MLBA_Sintashta Kazakhstan_Kumsay_EBA -0.001082 -4.033279
  190. details: Russia_BA_Okunevo.SG Kazakhstan_Kumsay_EBA 0.000254 0.813906
  191. dscore: Kazakhstan_Kumsay_EBA f4: 0.000056 Z: 0.216265
  192.  
  193. details: Kazakhstan_Dali_EBA Botai 0.005770 13.431735
  194. details: Russia_MLBA_Sintashta Botai -0.001718 -5.711379
  195. details: Russia_BA_Okunevo.SG Botai 0.002724 7.599914
  196. dscore: Botai f4: -0.000101 Z: -0.348808
  197.  
  198. gendstat: Cameroon_SMA.DG EEHG -0.214
  199. gendstat: Cameroon_SMA.DG WSHG 1.722
  200. gendstat: Cameroon_SMA.DG PPN 0.638
  201. gendstat: Cameroon_SMA.DG WEHG 0.368
  202. gendstat: Cameroon_SMA.DG Anatolia_N 0.623
  203. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.029
  204. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 0.789
  205. gendstat: Cameroon_SMA.DG ONG.SG -0.660
  206. gendstat: Cameroon_SMA.DG Russia_Steppe_Eneolithic -0.233
  207. gendstat: Cameroon_SMA.DG Kazakhstan_Kumsay_EBA 0.216
  208. gendstat: Cameroon_SMA.DG Botai -0.349
  209. gendstat: EEHG WSHG 2.172
  210. gendstat: EEHG PPN 0.832
  211. gendstat: EEHG WEHG 0.718
  212. gendstat: EEHG Anatolia_N 0.871
  213. gendstat: EEHG Iran_GanjDareh_N 0.212
  214. gendstat: EEHG Russia_UstBelaya_Angara 1.081
  215. gendstat: EEHG ONG.SG -0.382
  216. gendstat: EEHG Russia_Steppe_Eneolithic 0.003
  217. gendstat: EEHG Kazakhstan_Kumsay_EBA 0.514
  218. gendstat: EEHG Botai -0.162
  219. gendstat: WSHG PPN -1.094
  220. gendstat: WSHG WEHG -1.439
  221. gendstat: WSHG Anatolia_N -1.212
  222. gendstat: WSHG Iran_GanjDareh_N -1.788
  223. gendstat: WSHG Russia_UstBelaya_Angara -1.130
  224. gendstat: WSHG ONG.SG -2.339
  225. gendstat: WSHG Russia_Steppe_Eneolithic -2.124
  226. gendstat: WSHG Kazakhstan_Kumsay_EBA -1.929
  227. gendstat: WSHG Botai -2.350
  228. gendstat: PPN WEHG -0.293
  229. gendstat: PPN Anatolia_N -0.065
  230. gendstat: PPN Iran_GanjDareh_N -0.735
  231. gendstat: PPN Russia_UstBelaya_Angara 0.193
  232. gendstat: PPN ONG.SG -1.228
  233. gendstat: PPN Russia_Steppe_Eneolithic -0.896
  234. gendstat: PPN Kazakhstan_Kumsay_EBA -0.412
  235. gendstat: PPN Botai -0.901
  236. gendstat: WEHG Anatolia_N 0.295
  237. gendstat: WEHG Iran_GanjDareh_N -0.464
  238. gendstat: WEHG Russia_UstBelaya_Angara 0.470
  239. gendstat: WEHG ONG.SG -1.069
  240. gendstat: WEHG Russia_Steppe_Eneolithic -0.701
  241. gendstat: WEHG Kazakhstan_Kumsay_EBA -0.169
  242. gendstat: WEHG Botai -0.736
  243. gendstat: Anatolia_N Iran_GanjDareh_N -0.820
  244. gendstat: Anatolia_N Russia_UstBelaya_Angara 0.259
  245. gendstat: Anatolia_N ONG.SG -1.339
  246. gendstat: Anatolia_N Russia_Steppe_Eneolithic -1.016
  247. gendstat: Anatolia_N Kazakhstan_Kumsay_EBA -0.402
  248. gendstat: Anatolia_N Botai -0.915
  249. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.935
  250. gendstat: Iran_GanjDareh_N ONG.SG -0.653
  251. gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.238
  252. gendstat: Iran_GanjDareh_N Kazakhstan_Kumsay_EBA 0.276
  253. gendstat: Iran_GanjDareh_N Botai -0.354
  254. gendstat: Russia_UstBelaya_Angara ONG.SG -1.666
  255. gendstat: Russia_UstBelaya_Angara Russia_Steppe_Eneolithic -1.138
  256. gendstat: Russia_UstBelaya_Angara Kazakhstan_Kumsay_EBA -0.701
  257. gendstat: Russia_UstBelaya_Angara Botai -1.359
  258. gendstat: ONG.SG Russia_Steppe_Eneolithic 0.421
  259. gendstat: ONG.SG Kazakhstan_Kumsay_EBA 0.917
  260. gendstat: ONG.SG Botai 0.229
  261. gendstat: Russia_Steppe_Eneolithic Kazakhstan_Kumsay_EBA 0.526
  262. gendstat: Russia_Steppe_Eneolithic Botai -0.168
  263. gendstat: Kazakhstan_Kumsay_EBA Botai -0.701
  264.  
  265. ##end of qpAdm: 494.860 seconds cpu 1349.874 Mbytes in use
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