[ec2-user@ip-10-179-189-223 sequoia]$ echo balance-stnz-test | python sequoia/predict/pixel_stats/run.py
No configs found; falling back on auto-configuration
INFO:mrjob.conf:No configs found; falling back on auto-configuration
Creating temp directory /tmp/run.ec2-user.20180319.230243.550601
INFO:mrjob.runner:Creating temp directory /tmp/run.ec2-user.20180319.230243.550601
Running step 1 of 3...
INFO:mrjob.sim:Running step 1 of 3...
reading from STDIN
INFO:mrjob.runner:reading from STDIN
INFO:root:sequoia.predict.pixel_stats.yield_stand_partials_pixels: job: balance-stnz-test
INFO:root:Cache Hit!  balance-stnz-test/_cache/sequoia.predict.pixel_stats/yield_stand_partials_pixels/balance-stnz-test.txt
Running step 2 of 3...
INFO:mrjob.sim:Running step 2 of 3...
INFO:root:sequoia.predict.pixel_stats.predict_stats: job: balance-stnz-test|minigrid: -1707.00_195.00|stand: S702Mario01
INFO:root:Executing command: cd /opt/sequoia && python -m sequoia.predict.pixel_stats.scripts.predict_stats --key_file /mnt/vol/sequoia.predict.pixel_stats.scripts.predict_stats.key.a34eef28-6106-4503-a73a-ad1921cfda8d.txt --value_file /mnt/vol/sequoia.predict.pixel_stats.scripts.predict_stats.value.832301cf-7cad-4772-b6b9-00307b32f6d5.txt --out_file /mnt/vol/sequoia.predict.pixel_stats.scripts.predict_stats.output.5ea966d7-39a5-4f15-ac1c-defe14cb26dd.txt
Traceback (most recent call last):
  File "sequoia/predict/pixel_stats/run.py", line 42, in <module>
    PredictPixelStats.run()
  File "/usr/lib/python2.7/dist-packages/mrjob/job.py", line 439, in run
    mr_job.execute()
  File "/usr/lib/python2.7/dist-packages/mrjob/job.py", line 460, in execute
    super(MRJob, self).execute()
  File "/usr/lib/python2.7/dist-packages/mrjob/launch.py", line 161, in execute
    self.run_job()
  File "/usr/lib/python2.7/dist-packages/mrjob/launch.py", line 231, in run_job
    runner.run()
  File "/usr/lib/python2.7/dist-packages/mrjob/runner.py", line 476, in run
    self._run()
  File "/usr/lib/python2.7/dist-packages/mrjob/sim.py", line 185, in _run
    self._invoke_step(step_num, 'mapper')
  File "/usr/lib/python2.7/dist-packages/mrjob/sim.py", line 272, in _invoke_step
    working_dir, env)
  File "/usr/lib/python2.7/dist-packages/mrjob/inline.py", line 154, in _run_step
    child_instance.execute()
  File "/usr/lib/python2.7/dist-packages/mrjob/job.py", line 448, in execute
    self.run_mapper(self.options.step_num)
  File "/usr/lib/python2.7/dist-packages/mrjob/job.py", line 526, in run_mapper
    for out_key, out_value in mapper(key, value) or ():
  File "/usr/lib/python2.7/dist-packages/drjob/master.py", line 303, in function
    self.run_docker_cmd()
  File "/usr/lib/python2.7/dist-packages/drjob/master.py", line 239, in run_docker_cmd
    return docker.run_cmd(self.make_docker_cmd(), timeout=self.timeout)
  File "/usr/lib/python2.7/dist-packages/drjob/utils/docker.py", line 54, in run_cmd
    raise Exception(str(errs))
Exception: INFO:root:Process -1707.00_195.00/S702Mario01
INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/images/stand_pixels/-1707.00_195.00/S702Mario01.csv' to u'/tmp/tmpKJ78un/tmpIIaO0B/S702Mario01.csv'
INFO:root:Predict pixel stats
INFO:root:Running R command: Rscript /opt/ts_algo/exec/pr_pixel_preds_prec.R --coreModelFile /tmp/balance-stnz-test__models__core.Rda --pixelsFile /tmp/tmpKJ78un/input-pixels-S702Mario01.csv --predsFile /tmp/tmpKJ78un/pixel-stats-S702Mario01.csv --statsFile /tmp/tmpKJ78un/partial-stand-stats-S702Mario01.csv --numPosterior 100 --minigrid minigrid_-1707.00_195.00 --grid grid_-1716_192
Warning messages:
1: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'tsutils'
2: replacing previous import 'dplyr::vars' by 'yaImpute::vars' when loading 'tsutils'
Loading required package: RPostgreSQL
Loading required package: methods
Loading required package: DBI

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: Rcpp
rstanarm (Version 2.17.3, packaged: 2018-02-17 05:11:16 UTC)
- Do not expect the default priors to remain the same in future rstanarm versions.
Thus, R scripts should specify priors explicitly, even if they are just the defaults.
- For execution on a local, multicore CPU with excess RAM we recommend calling
options(mc.cores = parallel::detectCores())
- Plotting theme set to bayesplot::theme_default().

Attaching package: 'rstanarm'

The following object is masked from 'package:tsutils':

    waic

Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Error: Object tphPooled does not exist
Execution halted
Traceback (most recent call last):
  File "/usr/lib/python2.7/runpy.py", line 174, in _run_module_as_main
    "__main__", fname, loader, pkg_name)
  File "/usr/lib/python2.7/runpy.py", line 72, in _run_code
    exec code in run_globals
  File "/opt/sequoia/sequoia/predict/pixel_stats/scripts/predict_stats.py", line 105, in <module>
    PredictStats().run()
  File "/usr/local/lib/python2.7/dist-packages/drjob/slave.py", line 72, in run
    io.write_lines(self.out_file, self.process())
  File "/usr/local/lib/python2.7/dist-packages/drjob/utils/io.py", line 29, in write_lines
    for v in get_iterable(values):
  File "/opt/sequoia/sequoia/predict/pixel_stats/scripts/predict_stats.py", line 82, in run
    R.run_r_cmd(PREDICT_PIXEL_STATS, *args)
  File "sequoia/utils/R.py", line 36, in run_r_cmd
    raise Exception('Error running R script: %s' % cmd)
Exception: Error running R script: Rscript /opt/ts_algo/exec/pr_pixel_preds_prec.R --coreModelFile /tmp/balance-stnz-test__models__core.Rda --pixelsFile /tmp/tmpKJ78un/input-pixels-S702Mario01.csv --predsFile /tmp/tmpKJ78un/pixel-stats-S702Mario01.csv --statsFile /tmp/tmpKJ78un/partial-stand-stats-S702Mario01.csv --numPosterior 100 --minigrid minigrid_-1707.00_195.00 --grid grid_-1716_192