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- allsnps: YES
- ## qpAdm version: 1000
- seed: 2083728560
- read 1073741824 bytes
- read 1339052118 bytes
- packed geno read OK
- end of inpack
- left pops:
- Kumsay_EBA_Special
- WSHG
- Turkmenistan_Namazga_CA.SG
- right pops:
- Russia_MA1_HG
- EEHG
- WEHG
- Anatolia_N
- Russia_Shamanka_EN.SG
- Georgia_Satsurblia.SG
- Ganj_Dareh_N
- Onge.DG
- Russia_AfontovaGora3
- PPN
- Brazil_LapaDoSanto_9600BP
- China_Tianyuan
- 0 Kumsay_EBA_Special 1
- 1 WSHG 3
- 2 Turkmenistan_Namazga_CA.SG 2
- 3 Russia_MA1_HG 1
- 4 EEHG 5
- 5 WEHG 36
- 6 Anatolia_N 23
- 7 Russia_Shamanka_EN.SG 10
- 8 Georgia_Satsurblia.SG 1
- 9 Ganj_Dareh_N 8
- 10 Onge.DG 2
- 11 Russia_AfontovaGora3 1
- 12 PPN 8
- 13 Brazil_LapaDoSanto_9600BP 5
- 14 China_Tianyuan 1
- jackknife block size: 0.050
- snps: 1150459 indivs: 107
- number of blocks for block jackknife: 552
- ## ncols: 1150459
- coverage: Kumsay_EBA_Special 568425
- coverage: WSHG 858019
- coverage: Turkmenistan_Namazga_CA.SG 630721
- coverage: Russia_MA1_HG 805960
- coverage: EEHG 1052093
- coverage: WEHG 1141246
- coverage: Anatolia_N 1136560
- coverage: Russia_Shamanka_EN.SG 1149998
- coverage: Georgia_Satsurblia.SG 801311
- coverage: Ganj_Dareh_N 1057358
- coverage: Onge.DG 1120748
- coverage: Russia_AfontovaGora3 265583
- coverage: PPN 835499
- coverage: Brazil_LapaDoSanto_9600BP 946991
- coverage: China_Tianyuan 885079
- dof (jackknife): 465.715
- numsnps used: 1150459
- codimension 1
- f4info:
- f4rank: 1 dof: 10 chisq: 16.989 tail: 0.0746147501 dofdiff: 12 chisqdiff: -16.989 taildiff: 1
- B:
- scale 1.000
- EEHG -0.077
- WEHG 0.798
- Anatolia_N 1.659
- Russia_Shamanka_EN.SG 0.646
- Georgia_Satsurblia.SG 1.166
- Ganj_Dareh_N 1.621
- Onge.DG 0.876
- Russia_AfontovaGora3 -0.255
- PPN 1.356
- Brazil_LapaDoSanto_9600BP 0.228
- China_Tianyuan 0.688
- A:
- scale 415.194
- WSHG -0.481
- Turkmenistan_Namazga_CA.SG 1.330
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 16.989 taildiff: 0.0746147501
- B:
- scale 877.268 299.214
- EEHG 0.181 -0.036
- WEHG -0.698 0.836
- Anatolia_N -1.609 1.646
- Russia_Shamanka_EN.SG -0.269 0.738
- Georgia_Satsurblia.SG -1.751 1.026
- Ganj_Dareh_N -1.408 1.645
- Onge.DG -0.855 0.886
- Russia_AfontovaGora3 0.163 -0.247
- PPN -1.240 1.376
- Brazil_LapaDoSanto_9600BP -0.137 0.275
- China_Tianyuan -0.673 0.686
- A:
- scale 1.414 1.414
- WSHG 1.414 0.000
- Turkmenistan_Namazga_CA.SG 0.000 1.414
- best coefficients: 0.735 0.265
- Jackknife mean: 0.734407928 0.265592072
- std. errors: 0.025 0.025
- error covariance (* 1,000,000)
- 647 -647
- -647 647
- summ: Kumsay_EBA_Special 2 0.074615 0.734 0.266 647 -647 647
- fixed pat wt dof chisq tail prob
- 00 0 10 16.989 0.0746148 0.735 0.265
- 01 1 11 104.696 2.08945e-17 1.000 0.000
- 10 1 11 821.265 0 0.000 1.000
- best pat: 00 0.0746148 - -
- best pat: 01 2.08945e-17 chi(nested): 87.707 p-value for nested model: 7.5906e-21
- coeffs: 0.735 0.265
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: WSHG EEHG 0.000206 0.654095
- details: Turkmenistan_Namazga_CA.SG EEHG -0.000120 -0.455894
- dscore: EEHG f4: 0.000120 Z: 0.452274
- details: WSHG WEHG -0.000796 -2.112605
- details: Turkmenistan_Namazga_CA.SG WEHG 0.002795 8.622986
- dscore: WEHG f4: 0.000157 Z: 0.484627
- details: WSHG Anatolia_N -0.001835 -4.689992
- details: Turkmenistan_Namazga_CA.SG Anatolia_N 0.005502 16.435057
- dscore: Anatolia_N f4: 0.000113 Z: 0.334557
- details: WSHG Russia_Shamanka_EN.SG -0.000307 -0.821583
- details: Turkmenistan_Namazga_CA.SG Russia_Shamanka_EN.SG 0.002465 7.931532
- dscore: Russia_Shamanka_EN.SG f4: 0.000429 Z: 1.330740
- details: WSHG Georgia_Satsurblia.SG -0.001996 -5.982610
- details: Turkmenistan_Namazga_CA.SG Georgia_Satsurblia.SG 0.003427 12.072147
- dscore: Georgia_Satsurblia.SG f4: -0.000557 Z: -1.942327
- details: WSHG Ganj_Dareh_N -0.001605 -4.468679
- details: Turkmenistan_Namazga_CA.SG Ganj_Dareh_N 0.005498 18.784779
- dscore: Ganj_Dareh_N f4: 0.000280 Z: 0.912289
- details: WSHG Onge.DG -0.000975 -2.555026
- details: Turkmenistan_Namazga_CA.SG Onge.DG 0.002962 10.147258
- dscore: Onge.DG f4: 0.000070 Z: 0.217183
- details: WSHG Russia_AfontovaGora3 0.000185 0.758987
- details: Turkmenistan_Namazga_CA.SG Russia_AfontovaGora3 -0.000826 -3.592270
- dscore: Russia_AfontovaGora3 f4: -0.000083 Z: -0.396569
- details: WSHG PPN -0.001414 -3.607380
- details: Turkmenistan_Namazga_CA.SG PPN 0.004600 14.613692
- dscore: PPN f4: 0.000182 Z: 0.548127
- details: WSHG Brazil_LapaDoSanto_9600BP -0.000156 -0.439349
- details: Turkmenistan_Namazga_CA.SG Brazil_LapaDoSanto_9600BP 0.000919 3.091352
- dscore: Brazil_LapaDoSanto_9600BP f4: 0.000130 Z: 0.428191
- details: WSHG China_Tianyuan -0.000767 -1.909615
- details: Turkmenistan_Namazga_CA.SG China_Tianyuan 0.002293 7.692092
- dscore: China_Tianyuan f4: 0.000045 Z: 0.131250
- gendstat: Russia_MA1_HG EEHG 0.452
- gendstat: Russia_MA1_HG WEHG 0.485
- gendstat: Russia_MA1_HG Anatolia_N 0.335
- gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 1.331
- gendstat: Russia_MA1_HG Georgia_Satsurblia.SG -1.942
- gendstat: Russia_MA1_HG Ganj_Dareh_N 0.912
- gendstat: Russia_MA1_HG Onge.DG 0.217
- gendstat: Russia_MA1_HG Russia_AfontovaGora3 -0.397
- gendstat: Russia_MA1_HG PPN 0.548
- gendstat: Russia_MA1_HG Brazil_LapaDoSanto_9600BP 0.428
- gendstat: Russia_MA1_HG China_Tianyuan 0.131
- gendstat: EEHG WEHG 0.183
- gendstat: EEHG Anatolia_N -0.030
- gendstat: EEHG Russia_Shamanka_EN.SG 1.291
- gendstat: EEHG Georgia_Satsurblia.SG -2.389
- gendstat: EEHG Ganj_Dareh_N 0.693
- gendstat: EEHG Onge.DG -0.195
- gendstat: EEHG Russia_AfontovaGora3 -0.752
- gendstat: EEHG PPN 0.241
- gendstat: EEHG Brazil_LapaDoSanto_9600BP 0.041
- gendstat: EEHG China_Tianyuan -0.260
- gendstat: WEHG Anatolia_N -0.274
- gendstat: WEHG Russia_Shamanka_EN.SG 1.239
- gendstat: WEHG Georgia_Satsurblia.SG -2.564
- gendstat: WEHG Ganj_Dareh_N 0.586
- gendstat: WEHG Onge.DG -0.379
- gendstat: WEHG Russia_AfontovaGora3 -0.767
- gendstat: WEHG PPN 0.121
- gendstat: WEHG Brazil_LapaDoSanto_9600BP -0.115
- gendstat: WEHG China_Tianyuan -0.412
- gendstat: Anatolia_N Russia_Shamanka_EN.SG 1.434
- gendstat: Anatolia_N Georgia_Satsurblia.SG -2.566
- gendstat: Anatolia_N Ganj_Dareh_N 0.899
- gendstat: Anatolia_N Onge.DG -0.186
- gendstat: Anatolia_N Russia_AfontovaGora3 -0.590
- gendstat: Anatolia_N PPN 0.403
- gendstat: Anatolia_N Brazil_LapaDoSanto_9600BP 0.069
- gendstat: Anatolia_N China_Tianyuan -0.242
- gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG -3.448
- gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N -0.671
- gendstat: Russia_Shamanka_EN.SG Onge.DG -1.809
- gendstat: Russia_Shamanka_EN.SG Russia_AfontovaGora3 -1.637
- gendstat: Russia_Shamanka_EN.SG PPN -0.980
- gendstat: Russia_Shamanka_EN.SG Brazil_LapaDoSanto_9600BP -1.522
- gendstat: Russia_Shamanka_EN.SG China_Tianyuan -1.519
- gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N 3.226
- gendstat: Georgia_Satsurblia.SG Onge.DG 2.167
- gendstat: Georgia_Satsurblia.SG Russia_AfontovaGora3 1.578
- gendstat: Georgia_Satsurblia.SG PPN 2.665
- gendstat: Georgia_Satsurblia.SG Brazil_LapaDoSanto_9600BP 2.435
- gendstat: Georgia_Satsurblia.SG China_Tianyuan 1.783
- gendstat: Ganj_Dareh_N Onge.DG -0.892
- gendstat: Ganj_Dareh_N Russia_AfontovaGora3 -1.215
- gendstat: Ganj_Dareh_N PPN -0.438
- gendstat: Ganj_Dareh_N Brazil_LapaDoSanto_9600BP -0.622
- gendstat: Ganj_Dareh_N China_Tianyuan -0.819
- gendstat: Onge.DG Russia_AfontovaGora3 -0.473
- gendstat: Onge.DG PPN 0.439
- gendstat: Onge.DG Brazil_LapaDoSanto_9600BP 0.261
- gendstat: Onge.DG China_Tianyuan -0.094
- gendstat: Russia_AfontovaGora3 PPN 0.800
- gendstat: Russia_AfontovaGora3 Brazil_LapaDoSanto_9600BP 0.735
- gendstat: Russia_AfontovaGora3 China_Tianyuan 0.381
- gendstat: PPN Brazil_LapaDoSanto_9600BP -0.197
- gendstat: PPN China_Tianyuan -0.466
- gendstat: Brazil_LapaDoSanto_9600BP China_Tianyuan -0.311
- ##end of qpAdm: 235.551 seconds cpu 1293.509 Mbytes in use
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