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misnomer001

ozera outlier CHG proximal fail

misnomer001
Feb 9th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1804710270
  4. read 1073741824 bytes
  5. read 1324255962 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Ukraine_Yamnaya_Ozera
  11. Ukraine_Yamnaya
  12. Ukraine_Globular_Amphora
  13. Georgia_Kotias.SG
  14.  
  15. right pops:
  16. Russia_MA1_HG
  17. Italy_Villabruna
  18. Russia_Kostenki14
  19. Mbuti.DG
  20. Anatolia_N
  21. Czech_Vestonice16
  22. Morocco_Iberomaurusian
  23. Russia_Shamanka_EN.SG
  24. Georgia_Satsurblia.SG
  25. Ganj_Dareh_N
  26. Onge.DG
  27. WSHG
  28. PPN
  29. WEHG
  30.  
  31. 0 Ukraine_Yamnaya_Ozera 1
  32. 1 Ukraine_Yamnaya 1
  33. 2 Ukraine_Globular_Amphora 3
  34. 3 Georgia_Kotias.SG 1
  35. 4 Russia_MA1_HG 1
  36. 5 Italy_Villabruna 1
  37. 6 Russia_Kostenki14 1
  38. 7 Mbuti.DG 5
  39. 8 Anatolia_N 23
  40. 9 Czech_Vestonice16 1
  41. 10 Morocco_Iberomaurusian 6
  42. 11 Russia_Shamanka_EN.SG 10
  43. 12 Georgia_Satsurblia.SG 1
  44. 13 Ganj_Dareh_N 8
  45. 14 Onge.DG 2
  46. 15 WSHG 3
  47. 16 PPN 8
  48. 17 WEHG 36
  49. jackknife block size: 0.050
  50. snps: 1150536 indivs: 112
  51. number of blocks for block jackknife: 713
  52. ## ncols: 1150536
  53. coverage: Ukraine_Yamnaya_Ozera 601867
  54. coverage: Ukraine_Yamnaya 801924
  55. coverage: Ukraine_Globular_Amphora 1036892
  56. coverage: Georgia_Kotias.SG 1149097
  57. coverage: Russia_MA1_HG 805960
  58. coverage: Italy_Villabruna 883779
  59. coverage: Russia_Kostenki14 1068326
  60. coverage: Mbuti.DG 1150376
  61. coverage: Anatolia_N 1136560
  62. coverage: Czech_Vestonice16 732091
  63. coverage: Morocco_Iberomaurusian 1101342
  64. coverage: Russia_Shamanka_EN.SG 1149998
  65. coverage: Georgia_Satsurblia.SG 801311
  66. coverage: Ganj_Dareh_N 1057358
  67. coverage: Onge.DG 1120748
  68. coverage: WSHG 858019
  69. coverage: PPN 835499
  70. coverage: WEHG 1141246
  71. dof (jackknife): 618.773
  72. numsnps used: 1150536
  73. codimension 1
  74. f4info:
  75. f4rank: 2 dof: 11 chisq: 37.988 tail: 7.85878363e-05 dofdiff: 13 chisqdiff: -37.988 taildiff: 1
  76. B:
  77. scale 1.000 1.000
  78. Italy_Villabruna 1.367 -1.149
  79. Russia_Kostenki14 0.811 -0.179
  80. Mbuti.DG 0.931 0.765
  81. Anatolia_N 1.786 -0.550
  82. Czech_Vestonice16 1.005 -0.324
  83. Morocco_Iberomaurusian 1.044 -0.005
  84. Russia_Shamanka_EN.SG 0.465 0.555
  85. Georgia_Satsurblia.SG 0.197 2.490
  86. Ganj_Dareh_N 0.420 1.465
  87. Onge.DG 0.555 0.468
  88. WSHG -0.188 -0.157
  89. PPN 1.374 -0.485
  90. WEHG 1.286 -1.235
  91. A:
  92. scale 543.337 950.053
  93. Ukraine_Yamnaya -0.518 -0.374
  94. Ukraine_Globular_Amphora 1.560 -0.326
  95. Georgia_Kotias.SG 0.546 1.660
  96.  
  97.  
  98. full rank
  99. f4info:
  100. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 37.988 taildiff: 7.85878363e-05
  101. B:
  102. scale 956.689 328.608 535.140
  103. Italy_Villabruna -0.629 1.487 -0.264
  104. Russia_Kostenki14 -1.134 0.720 0.144
  105. Mbuti.DG -1.289 0.790 1.169
  106. Anatolia_N -1.656 1.743 0.365
  107. Czech_Vestonice16 -0.396 1.125 0.362
  108. Morocco_Iberomaurusian -1.001 1.005 0.579
  109. Russia_Shamanka_EN.SG -0.754 0.387 0.722
  110. Georgia_Satsurblia.SG -0.390 0.106 2.789
  111. Ganj_Dareh_N -1.634 0.108 1.358
  112. Onge.DG -0.631 0.517 0.781
  113. WSHG 0.395 -0.090 -0.183
  114. PPN -1.270 1.338 0.238
  115. WEHG -0.444 1.446 -0.314
  116. A:
  117. scale 1.732 1.732 1.732
  118. Ukraine_Yamnaya 1.732 0.000 0.000
  119. Ukraine_Globular_Amphora 0.000 1.732 0.000
  120. Georgia_Kotias.SG 0.000 0.000 1.732
  121.  
  122.  
  123. best coefficients: 0.663 0.157 0.180
  124. Jackknife mean: 0.662806634 0.156999019 0.180194347
  125. std. errors: 0.060 0.035 0.045
  126.  
  127. error covariance (* 1,000,000)
  128. 3609 -1386 -2223
  129. -1386 1191 195
  130. -2223 195 2027
  131.  
  132.  
  133. summ: Ukraine_Yamnaya_Ozera 3 0.000079 0.663 0.157 0.180 3609 -1386 -2223 1191 195 ...
  134. 2027
  135.  
  136. fixed pat wt dof chisq tail prob
  137. 000 0 11 37.988 7.85878e-05 0.663 0.157 0.180
  138. 001 1 12 56.848 8.41964e-08 0.869 0.131 0.000
  139. 010 1 12 60.660 1.71085e-08 0.854 0.000 0.146
  140. 100 1 12 174.131 0 0.000 0.416 0.584
  141. 011 2 13 67.486 2.32266e-09 1.000 0.000 0.000
  142. 101 2 13 566.247 0 0.000 1.000 0.000
  143. 110 2 13 346.479 0 0.000 0.000 1.000
  144. best pat: 000 7.85878e-05 - -
  145. best pat: 001 8.41964e-08 chi(nested): 18.860 p-value for nested model: 1.40707e-05
  146. best pat: 011 2.32266e-09 chi(nested): 10.638 p-value for nested model: 0.00110814
  147.  
  148. coeffs: 0.663 0.157 0.180
  149.  
  150. ## dscore:: f_4(Base, Fit, Rbase, right2)
  151. ## genstat:: f_4(Base, Fit, right1, right2)
  152.  
  153. details: Ukraine_Yamnaya Italy_Villabruna -0.000657 -1.445958
  154. details: Ukraine_Globular_Amphora Italy_Villabruna 0.004525 10.988558
  155. details: Georgia_Kotias.SG Italy_Villabruna -0.000494 -1.124297
  156. dscore: Italy_Villabruna f4: 0.000185 Z: 0.477833
  157.  
  158. details: Ukraine_Yamnaya Russia_Kostenki14 -0.001186 -2.991735
  159. details: Ukraine_Globular_Amphora Russia_Kostenki14 0.002192 5.856953
  160. details: Georgia_Kotias.SG Russia_Kostenki14 0.000270 0.633365
  161. dscore: Russia_Kostenki14 f4: -0.000394 Z: -1.145672
  162.  
  163. details: Ukraine_Yamnaya Mbuti.DG -0.001348 -3.112772
  164. details: Ukraine_Globular_Amphora Mbuti.DG 0.002405 6.063316
  165. details: Georgia_Kotias.SG Mbuti.DG 0.002185 4.657000
  166. dscore: Mbuti.DG f4: -0.000123 Z: -0.330655
  167.  
  168. details: Ukraine_Yamnaya Anatolia_N -0.001731 -4.074547
  169. details: Ukraine_Globular_Amphora Anatolia_N 0.005304 13.547530
  170. details: Georgia_Kotias.SG Anatolia_N 0.000683 1.597565
  171. dscore: Anatolia_N f4: -0.000192 Z: -0.527713
  172.  
  173. details: Ukraine_Yamnaya Czech_Vestonice16 -0.000414 -0.958214
  174. details: Ukraine_Globular_Amphora Czech_Vestonice16 0.003424 8.692515
  175. details: Georgia_Kotias.SG Czech_Vestonice16 0.000676 1.599765
  176. dscore: Czech_Vestonice16 f4: 0.000384 Z: 1.044305
  177.  
  178. details: Ukraine_Yamnaya Morocco_Iberomaurusian -0.001046 -2.602753
  179. details: Ukraine_Globular_Amphora Morocco_Iberomaurusian 0.003059 8.185608
  180. details: Georgia_Kotias.SG Morocco_Iberomaurusian 0.001082 2.518713
  181. dscore: Morocco_Iberomaurusian f4: -0.000019 Z: -0.053993
  182.  
  183. details: Ukraine_Yamnaya Russia_Shamanka_EN.SG -0.000789 -2.021001
  184. details: Ukraine_Globular_Amphora Russia_Shamanka_EN.SG 0.001179 3.342993
  185. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG 0.001350 3.353270
  186. dscore: Russia_Shamanka_EN.SG f4: -0.000095 Z: -0.283936
  187.  
  188. details: Ukraine_Yamnaya Georgia_Satsurblia.SG -0.000408 -1.161054
  189. details: Ukraine_Globular_Amphora Georgia_Satsurblia.SG 0.000324 0.936561
  190. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005212 13.033905
  191. dscore: Georgia_Satsurblia.SG f4: 0.000719 Z: 2.346327
  192.  
  193. details: Ukraine_Yamnaya Ganj_Dareh_N -0.001708 -4.351648
  194. details: Ukraine_Globular_Amphora Ganj_Dareh_N 0.000328 0.896133
  195. details: Georgia_Kotias.SG Ganj_Dareh_N 0.002537 6.130147
  196. dscore: Ganj_Dareh_N f4: -0.000624 Z: -1.840088
  197.  
  198. details: Ukraine_Yamnaya Onge.DG -0.000660 -1.632500
  199. details: Ukraine_Globular_Amphora Onge.DG 0.001572 4.197469
  200. details: Georgia_Kotias.SG Onge.DG 0.001459 3.400902
  201. dscore: Onge.DG f4: 0.000072 Z: 0.206443
  202.  
  203. details: Ukraine_Yamnaya WSHG 0.000413 1.113795
  204. details: Ukraine_Globular_Amphora WSHG -0.000273 -0.806186
  205. details: Georgia_Kotias.SG WSHG -0.000342 -0.893733
  206. dscore: WSHG f4: 0.000170 Z: 0.536680
  207.  
  208. details: Ukraine_Yamnaya PPN -0.001327 -3.075213
  209. details: Ukraine_Globular_Amphora PPN 0.004073 10.631077
  210. details: Georgia_Kotias.SG PPN 0.000446 1.065644
  211. dscore: PPN f4: -0.000160 Z: -0.437999
  212.  
  213. details: Ukraine_Yamnaya WEHG -0.000465 -1.167767
  214. details: Ukraine_Globular_Amphora WEHG 0.004401 12.100268
  215. details: Georgia_Kotias.SG WEHG -0.000587 -1.475679
  216. dscore: WEHG f4: 0.000277 Z: 0.821827
  217.  
  218. gendstat: Russia_MA1_HG Italy_Villabruna 0.478
  219. gendstat: Russia_MA1_HG Russia_Kostenki14 -1.146
  220. gendstat: Russia_MA1_HG Mbuti.DG -0.331
  221. gendstat: Russia_MA1_HG Anatolia_N -0.528
  222. gendstat: Russia_MA1_HG Czech_Vestonice16 1.044
  223. gendstat: Russia_MA1_HG Morocco_Iberomaurusian -0.054
  224. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG -0.284
  225. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 2.346
  226. gendstat: Russia_MA1_HG Ganj_Dareh_N -1.840
  227. gendstat: Russia_MA1_HG Onge.DG 0.206
  228. gendstat: Russia_MA1_HG WSHG 0.537
  229. gendstat: Russia_MA1_HG PPN -0.438
  230. gendstat: Russia_MA1_HG WEHG 0.822
  231. gendstat: Italy_Villabruna Russia_Kostenki14 -1.669
  232. gendstat: Italy_Villabruna Mbuti.DG -0.889
  233. gendstat: Italy_Villabruna Anatolia_N -1.232
  234. gendstat: Italy_Villabruna Czech_Vestonice16 0.548
  235. gendstat: Italy_Villabruna Morocco_Iberomaurusian -0.590
  236. gendstat: Italy_Villabruna Russia_Shamanka_EN.SG -0.825
  237. gendstat: Italy_Villabruna Georgia_Satsurblia.SG 1.399
  238. gendstat: Italy_Villabruna Ganj_Dareh_N -2.417
  239. gendstat: Italy_Villabruna Onge.DG -0.325
  240. gendstat: Italy_Villabruna WSHG -0.045
  241. gendstat: Italy_Villabruna PPN -0.988
  242. gendstat: Italy_Villabruna WEHG 0.368
  243. gendstat: Russia_Kostenki14 Mbuti.DG 0.898
  244. gendstat: Russia_Kostenki14 Anatolia_N 0.718
  245. gendstat: Russia_Kostenki14 Czech_Vestonice16 2.275
  246. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian 1.230
  247. gendstat: Russia_Kostenki14 Russia_Shamanka_EN.SG 1.043
  248. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 3.228
  249. gendstat: Russia_Kostenki14 Ganj_Dareh_N -0.776
  250. gendstat: Russia_Kostenki14 Onge.DG 1.521
  251. gendstat: Russia_Kostenki14 WSHG 1.727
  252. gendstat: Russia_Kostenki14 PPN 0.740
  253. gendstat: Russia_Kostenki14 WEHG 2.421
  254. gendstat: Mbuti.DG Anatolia_N -0.281
  255. gendstat: Mbuti.DG Czech_Vestonice16 1.473
  256. gendstat: Mbuti.DG Morocco_Iberomaurusian 0.408
  257. gendstat: Mbuti.DG Russia_Shamanka_EN.SG 0.110
  258. gendstat: Mbuti.DG Georgia_Satsurblia.SG 2.632
  259. gendstat: Mbuti.DG Ganj_Dareh_N -1.934
  260. gendstat: Mbuti.DG Onge.DG 0.703
  261. gendstat: Mbuti.DG WSHG 0.922
  262. gendstat: Mbuti.DG PPN -0.130
  263. gendstat: Mbuti.DG WEHG 1.482
  264. gendstat: Anatolia_N Czech_Vestonice16 1.939
  265. gendstat: Anatolia_N Morocco_Iberomaurusian 0.759
  266. gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.404
  267. gendstat: Anatolia_N Georgia_Satsurblia.SG 2.988
  268. gendstat: Anatolia_N Ganj_Dareh_N -1.906
  269. gendstat: Anatolia_N Onge.DG 1.016
  270. gendstat: Anatolia_N WSHG 1.197
  271. gendstat: Anatolia_N PPN 0.146
  272. gendstat: Anatolia_N WEHG 2.397
  273. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian -1.257
  274. gendstat: Czech_Vestonice16 Russia_Shamanka_EN.SG -1.509
  275. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 0.892
  276. gendstat: Czech_Vestonice16 Ganj_Dareh_N -3.240
  277. gendstat: Czech_Vestonice16 Onge.DG -0.929
  278. gendstat: Czech_Vestonice16 WSHG -0.630
  279. gendstat: Czech_Vestonice16 PPN -1.624
  280. gendstat: Czech_Vestonice16 WEHG -0.374
  281. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG -0.299
  282. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 2.318
  283. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -2.421
  284. gendstat: Morocco_Iberomaurusian Onge.DG 0.324
  285. gendstat: Morocco_Iberomaurusian WSHG 0.646
  286. gendstat: Morocco_Iberomaurusian PPN -0.521
  287. gendstat: Morocco_Iberomaurusian WEHG 1.189
  288. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG 2.681
  289. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N -2.150
  290. gendstat: Russia_Shamanka_EN.SG Onge.DG 0.750
  291. gendstat: Russia_Shamanka_EN.SG WSHG 0.967
  292. gendstat: Russia_Shamanka_EN.SG PPN -0.234
  293. gendstat: Russia_Shamanka_EN.SG WEHG 1.467
  294. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N -4.621
  295. gendstat: Georgia_Satsurblia.SG Onge.DG -2.008
  296. gendstat: Georgia_Satsurblia.SG WSHG -1.715
  297. gendstat: Georgia_Satsurblia.SG PPN -2.640
  298. gendstat: Georgia_Satsurblia.SG WEHG -1.406
  299. gendstat: Ganj_Dareh_N Onge.DG 2.620
  300. gendstat: Ganj_Dareh_N WSHG 2.709
  301. gendstat: Ganj_Dareh_N PPN 1.747
  302. gendstat: Ganj_Dareh_N WEHG 3.619
  303. gendstat: Onge.DG WSHG 0.323
  304. gendstat: Onge.DG PPN -0.783
  305. gendstat: Onge.DG WEHG 0.757
  306. gendstat: WSHG PPN -1.016
  307. gendstat: WSHG WEHG 0.401
  308. gendstat: PPN WEHG 1.695
  309.  
  310. ##end of qpAdm: 268.507 seconds cpu 1441.354 Mbytes in use
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