phi151

lubuntu@lubuntu:~/Downloads$ ./philosopher version
INFO[21:36:20] Current Philosopher build and version         build=1566924968 version=v1.5.1
lubuntu@lubuntu:~/Downloads$ ./philosopher
Philosopher: A toolkit for Proteomics data analysis and post-processing filtering

Usage:
  philosopher [command]

Available Commands:
  abacus         Combined analysis of LC-MS/MS results
  cluster        Protein report based on protein clusters
  comet          Peptide spectrum matching with Comet
  database       Target-Decoy database formatting
  filter         Statistical filtering, validation and False Discovery Rates assessment
  freequant      Label-free Quantification
  help           Help about any command
  iprophet       MS/MS integrative analysis
  labelquant     Isobaric Labeling-Based Relative Quantification
  msfragger      Ultra fast and comprehensive peptide identification in mass spectrometry–based proteomics
  peptideprophet Peptide assignment validation
  pipeline       Automatic execution of consecutive analysis steps
  proteinprophet Protein identification validation
  ptmprophet     PTM site localization
  report         Multi-level reporting for both narrow-searches and open-searches
  slack          Push notifications to Slack
  tmtintegrator  integrates channel abundances from multiple TMT samples
  version        Philosopher version
  workspace      Manage the experiment workspace for the analysis

Flags:
  -h, --help   help for philosopher

Use "philosopher [command] --help" for more information about a command.