API tools faq
paste
misnomer001

spgt_o kumsay eba right pop

misnomer001
Mar 17th, 2020
199
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 11.07 KB | None | 0 0
raw download clone embed print report
  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1849376953
  4. read 1073741824 bytes
  5. read 2057898697 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. SPGT_o
  11. InPe_Native
  12. Uzbekistan_BA_Dzharkutan1
  13. Kazakhstan_MLBA_Dali
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Kazakhstan_Kumsay_EBA
  24. Russia_UstBelaya_Angara
  25. ONG.SG
  26. Botai
  27.  
  28. 0 SPGT_o 2
  29. 1 InPe_Native 4
  30. 2 Uzbekistan_BA_Dzharkutan1 7
  31. 3 Kazakhstan_MLBA_Dali 3
  32. 4 Cameroon_SMA.DG 1
  33. 5 EEHG 5
  34. 6 WSHG 3
  35. 7 PPN 11
  36. 8 WEHG 33
  37. 9 Anatolia_N 22
  38. 10 Iran_GanjDareh_N 8
  39. 11 Kazakhstan_Kumsay_EBA 4
  40. 12 Russia_UstBelaya_Angara 8
  41. 13 ONG.SG 6
  42. 14 Botai 2
  43. jackknife block size: 0.050
  44. snps: 1150506 indivs: 119
  45. number of blocks for block jackknife: 713
  46. ## ncols: 1150506
  47. coverage: SPGT_o 673520
  48. coverage: InPe_Native 841356
  49. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  50. coverage: Kazakhstan_MLBA_Dali 931588
  51. coverage: Cameroon_SMA.DG 1140138
  52. coverage: EEHG 1052093
  53. coverage: WSHG 858019
  54. coverage: PPN 847771
  55. coverage: WEHG 1140599
  56. coverage: Anatolia_N 1139031
  57. coverage: Iran_GanjDareh_N 1057358
  58. coverage: Kazakhstan_Kumsay_EBA 960872
  59. coverage: Russia_UstBelaya_Angara 1072574
  60. coverage: ONG.SG 1143397
  61. coverage: Botai 926654
  62. dof (jackknife): 623.320
  63. numsnps used: 1150506
  64. codimension 1
  65. f4info:
  66. f4rank: 2 dof: 8 chisq: 2.957 tail: 0.937025831 dofdiff: 10 chisqdiff: -2.957 taildiff: 1
  67. B:
  68. scale 1.000 1.000
  69. EEHG 1.429 -0.334
  70. WSHG 1.143 -0.368
  71. PPN 0.661 1.257
  72. WEHG 1.678 -0.256
  73. Anatolia_N 0.937 1.093
  74. Iran_GanjDareh_N -0.217 2.006
  75. Kazakhstan_Kumsay_EBA 0.998 0.021
  76. Russia_UstBelaya_Angara 0.342 -1.078
  77. ONG.SG -0.132 -1.258
  78. Botai 1.158 -0.378
  79. A:
  80. scale 549.614 1576.831
  81. InPe_Native -1.196 -0.959
  82. Uzbekistan_BA_Dzharkutan1 -0.404 1.394
  83. Kazakhstan_MLBA_Dali 1.186 -0.369
  84.  
  85.  
  86. full rank
  87. f4info:
  88. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 2.957 taildiff: 0.937025831
  89. B:
  90. scale 495.255 928.971 405.667
  91. EEHG -1.290 -0.969 1.428
  92. WSHG -0.967 -0.798 1.189
  93. PPN -0.953 0.849 0.593
  94. WEHG -1.631 -1.155 1.599
  95. Anatolia_N -1.222 0.485 0.838
  96. Iran_GanjDareh_N -0.244 2.044 -0.240
  97. Kazakhstan_Kumsay_EBA -0.921 -0.359 1.044
  98. Russia_UstBelaya_Angara 0.156 -0.757 0.600
  99. ONG.SG 0.645 -0.729 0.124
  100. Botai -0.995 -0.850 1.189
  101. A:
  102. scale 1.732 1.732 1.732
  103. InPe_Native 1.732 0.000 0.000
  104. Uzbekistan_BA_Dzharkutan1 0.000 1.732 0.000
  105. Kazakhstan_MLBA_Dali 0.000 0.000 1.732
  106.  
  107.  
  108. best coefficients: 0.293 0.307 0.400
  109. Jackknife mean: 0.292511572 0.307756154 0.399732274
  110. std. errors: 0.047 0.052 0.031
  111.  
  112. error covariance (* 1,000,000)
  113. 2243 -1986 -257
  114. -1986 2673 -688
  115. -257 -688 945
  116.  
  117.  
  118. summ: SPGT_o 3 0.937026 0.293 0.308 0.400 2243 -1986 -257 2673 -688 ...
  119. 945
  120.  
  121. fixed pat wt dof chisq tail prob
  122. 000 0 8 2.957 0.937026 0.293 0.307 0.400
  123. 001 1 9 169.437 0 0.428 0.572 0.000
  124. 010 1 9 36.320 3.47801e-05 0.521 0.000 0.479
  125. 100 1 9 40.680 5.71983e-06 0.000 0.555 0.445
  126. 011 2 10 261.748 0 1.000 0.000 0.000
  127. 101 2 10 225.888 0 0.000 1.000 0.000
  128. 110 2 10 274.380 0 0.000 0.000 1.000
  129. best pat: 000 0.937026 - -
  130. best pat: 010 3.47801e-05 chi(nested): 33.363 p-value for nested model: 7.64565e-09
  131. best pat: 101 6.24989e-43 not nested
  132.  
  133. coeffs: 0.293 0.307 0.400
  134.  
  135. ## dscore:: f_4(Base, Fit, Rbase, right2)
  136. ## genstat:: f_4(Base, Fit, right1, right2)
  137.  
  138. details: InPe_Native EEHG -0.002604 -7.316892
  139. details: Uzbekistan_BA_Dzharkutan1 EEHG -0.001043 -3.215417
  140. details: Kazakhstan_MLBA_Dali EEHG 0.003520 9.628399
  141. dscore: EEHG f4: 0.000324 Z: 1.042617
  142.  
  143. details: InPe_Native WSHG -0.001953 -4.815656
  144. details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000859 -2.334326
  145. details: Kazakhstan_MLBA_Dali WSHG 0.002932 6.999951
  146. dscore: WSHG f4: 0.000336 Z: 0.948076
  147.  
  148. details: InPe_Native PPN -0.001923 -5.535727
  149. details: Uzbekistan_BA_Dzharkutan1 PPN 0.000914 2.798739
  150. details: Kazakhstan_MLBA_Dali PPN 0.001461 3.962587
  151. dscore: PPN f4: 0.000302 Z: 0.975452
  152.  
  153. details: InPe_Native WEHG -0.003294 -9.353340
  154. details: Uzbekistan_BA_Dzharkutan1 WEHG -0.001243 -3.889530
  155. details: Kazakhstan_MLBA_Dali WEHG 0.003941 11.005373
  156. dscore: WEHG f4: 0.000229 Z: 0.754182
  157.  
  158. details: InPe_Native Anatolia_N -0.002468 -7.988303
  159. details: Uzbekistan_BA_Dzharkutan1 Anatolia_N 0.000522 1.886219
  160. details: Kazakhstan_MLBA_Dali Anatolia_N 0.002067 6.594461
  161. dscore: Anatolia_N f4: 0.000264 Z: 1.010048
  162.  
  163. details: InPe_Native Iran_GanjDareh_N -0.000492 -1.566520
  164. details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.002200 7.580419
  165. details: Kazakhstan_MLBA_Dali Iran_GanjDareh_N -0.000591 -1.823838
  166. dscore: Iran_GanjDareh_N f4: 0.000296 Z: 1.079066
  167.  
  168. details: InPe_Native Kazakhstan_Kumsay_EBA -0.001860 -5.293729
  169. details: Uzbekistan_BA_Dzharkutan1 Kazakhstan_Kumsay_EBA -0.000387 -1.194667
  170. details: Kazakhstan_MLBA_Dali Kazakhstan_Kumsay_EBA 0.002573 7.026521
  171. dscore: Kazakhstan_Kumsay_EBA f4: 0.000365 Z: 1.184722
  172.  
  173. details: InPe_Native Russia_UstBelaya_Angara 0.000315 0.965978
  174. details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.000814 -2.816450
  175. details: Kazakhstan_MLBA_Dali Russia_UstBelaya_Angara 0.001479 4.452148
  176. dscore: Russia_UstBelaya_Angara f4: 0.000433 Z: 1.549532
  177.  
  178. details: InPe_Native ONG.SG 0.001303 3.834421
  179. details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.000784 -2.660184
  180. details: Kazakhstan_MLBA_Dali ONG.SG 0.000305 0.889955
  181. dscore: ONG.SG f4: 0.000263 Z: 0.906469
  182.  
  183. details: InPe_Native Botai -0.002008 -5.228991
  184. details: Uzbekistan_BA_Dzharkutan1 Botai -0.000915 -2.714608
  185. details: Kazakhstan_MLBA_Dali Botai 0.002931 7.425596
  186. dscore: Botai f4: 0.000302 Z: 0.916041
  187.  
  188. gendstat: Cameroon_SMA.DG EEHG 1.043
  189. gendstat: Cameroon_SMA.DG WSHG 0.948
  190. gendstat: Cameroon_SMA.DG PPN 0.975
  191. gendstat: Cameroon_SMA.DG WEHG 0.754
  192. gendstat: Cameroon_SMA.DG Anatolia_N 1.010
  193. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 1.079
  194. gendstat: Cameroon_SMA.DG Kazakhstan_Kumsay_EBA 1.185
  195. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 1.550
  196. gendstat: Cameroon_SMA.DG ONG.SG 0.906
  197. gendstat: Cameroon_SMA.DG Botai 0.916
  198. gendstat: EEHG WSHG 0.044
  199. gendstat: EEHG PPN -0.074
  200. gendstat: EEHG WEHG -0.400
  201. gendstat: EEHG Anatolia_N -0.240
  202. gendstat: EEHG Iran_GanjDareh_N -0.104
  203. gendstat: EEHG Kazakhstan_Kumsay_EBA 0.168
  204. gendstat: EEHG Russia_UstBelaya_Angara 0.403
  205. gendstat: EEHG ONG.SG -0.198
  206. gendstat: EEHG Botai -0.079
  207. gendstat: WSHG PPN -0.101
  208. gendstat: WSHG WEHG -0.362
  209. gendstat: WSHG Anatolia_N -0.236
  210. gendstat: WSHG Iran_GanjDareh_N -0.130
  211. gendstat: WSHG Kazakhstan_Kumsay_EBA 0.111
  212. gendstat: WSHG Russia_UstBelaya_Angara 0.345
  213. gendstat: WSHG ONG.SG -0.217
  214. gendstat: WSHG Botai -0.121
  215. gendstat: PPN WEHG -0.282
  216. gendstat: PPN Anatolia_N -0.191
  217. gendstat: PPN Iran_GanjDareh_N -0.022
  218. gendstat: PPN Kazakhstan_Kumsay_EBA 0.209
  219. gendstat: PPN Russia_UstBelaya_Angara 0.438
  220. gendstat: PPN ONG.SG -0.120
  221. gendstat: PPN Botai 0.002
  222. gendstat: WEHG Anatolia_N 0.172
  223. gendstat: WEHG Iran_GanjDareh_N 0.246
  224. gendstat: WEHG Kazakhstan_Kumsay_EBA 0.520
  225. gendstat: WEHG Russia_UstBelaya_Angara 0.768
  226. gendstat: WEHG ONG.SG 0.108
  227. gendstat: WEHG Botai 0.252
  228. gendstat: Anatolia_N Iran_GanjDareh_N 0.139
  229. gendstat: Anatolia_N Kazakhstan_Kumsay_EBA 0.396
  230. gendstat: Anatolia_N Russia_UstBelaya_Angara 0.664
  231. gendstat: Anatolia_N ONG.SG -0.006
  232. gendstat: Anatolia_N Botai 0.131
  233. gendstat: Iran_GanjDareh_N Kazakhstan_Kumsay_EBA 0.262
  234. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.526
  235. gendstat: Iran_GanjDareh_N ONG.SG -0.114
  236. gendstat: Iran_GanjDareh_N Botai 0.023
  237. gendstat: Kazakhstan_Kumsay_EBA Russia_UstBelaya_Angara 0.280
  238. gendstat: Kazakhstan_Kumsay_EBA ONG.SG -0.335
  239. gendstat: Kazakhstan_Kumsay_EBA Botai -0.257
  240. gendstat: Russia_UstBelaya_Angara ONG.SG -0.698
  241. gendstat: Russia_UstBelaya_Angara Botai -0.503
  242. gendstat: ONG.SG Botai 0.125
  243.  
  244. ##end of qpAdm: 479.052 seconds cpu 1294.438 Mbytes in use
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!