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misnomer001

bustan_ba_o1

misnomer001
Apr 6th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1815035896
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Uzbekistan_BA_Bustan_o1
  11. InPe_Native
  12. Uzbekistan_BA_Bustan
  13. Kyrgyzstan_BA_Aygirdjal
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. CHG
  24. ONG.SG
  25. Boisman_MN
  26.  
  27. 0 Uzbekistan_BA_Bustan_o1 1
  28. 1 InPe_Native 4
  29. 2 Uzbekistan_BA_Bustan 10
  30. 3 Kyrgyzstan_BA_Aygirdjal 2
  31. 4 Cameroon_SMA.DG 1
  32. 5 EEHG 5
  33. 6 WSHG 3
  34. 7 PPN 11
  35. 8 WEHG 33
  36. 9 Anatolia_N 22
  37. 10 Iran_GanjDareh_N 8
  38. 11 CHG 2
  39. 12 ONG.SG 6
  40. 13 Boisman_MN 12
  41. jackknife block size: 0.050
  42. snps: 1150509 indivs: 120
  43. number of blocks for block jackknife: 713
  44. ## ncols: 1150509
  45. coverage: Uzbekistan_BA_Bustan_o1 682421
  46. coverage: InPe_Native 841356
  47. coverage: Uzbekistan_BA_Bustan 971774
  48. coverage: Kyrgyzstan_BA_Aygirdjal 818114
  49. coverage: Cameroon_SMA.DG 1140138
  50. coverage: EEHG 1052093
  51. coverage: WSHG 858019
  52. coverage: PPN 847771
  53. coverage: WEHG 1140599
  54. coverage: Anatolia_N 1139031
  55. coverage: Iran_GanjDareh_N 1057358
  56. coverage: CHG 1149558
  57. coverage: ONG.SG 1143397
  58. coverage: Boisman_MN 1031750
  59. dof (jackknife): 622.654
  60. numsnps used: 1150509
  61. codimension 1
  62. f4info:
  63. f4rank: 2 dof: 7 chisq: 12.969 tail: 0.0728766818 dofdiff: 9 chisqdiff: -12.969 taildiff: 1
  64. B:
  65. scale 1.000 1.000
  66. EEHG 1.405 0.894
  67. WSHG 1.551 1.490
  68. PPN 0.690 -1.060
  69. WEHG 1.145 0.108
  70. Anatolia_N 0.902 -1.065
  71. Iran_GanjDareh_N 0.699 -1.210
  72. CHG 0.904 -0.640
  73. ONG.SG -0.687 0.859
  74. Boisman_MN -0.493 1.048
  75. A:
  76. scale 786.591 1280.278
  77. InPe_Native -1.616 0.558
  78. Uzbekistan_BA_Bustan -0.235 -1.091
  79. Kyrgyzstan_BA_Aygirdjal 0.577 1.225
  80.  
  81.  
  82. full rank
  83. f4info:
  84. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 12.969 taildiff: 0.0728766818
  85. B:
  86. scale 514.006 1115.641 694.465
  87. EEHG -1.015 -0.615 1.799
  88. WSHG -1.262 -1.815 1.865
  89. PPN -0.825 1.132 -0.124
  90. WEHG -1.009 -0.020 0.985
  91. Anatolia_N -0.920 1.409 0.213
  92. Iran_GanjDareh_N -0.918 1.161 -0.274
  93. CHG -0.908 0.818 0.318
  94. ONG.SG 1.064 -0.169 0.479
  95. Boisman_MN 1.017 -0.123 0.920
  96. A:
  97. scale 1.732 1.732 1.732
  98. InPe_Native 1.732 0.000 0.000
  99. Uzbekistan_BA_Bustan 0.000 1.732 0.000
  100. Kyrgyzstan_BA_Aygirdjal 0.000 0.000 1.732
  101.  
  102.  
  103. best coefficients: 0.075 0.507 0.417
  104. Jackknife mean: 0.075453047 0.507214214 0.417332738
  105. std. errors: 0.046 0.056 0.057
  106.  
  107. error covariance (* 1,000,000)
  108. 2113 -967 -1145
  109. -967 3084 -2117
  110. -1145 -2117 3263
  111.  
  112.  
  113. summ: Uzbekistan_BA_Bustan_o1 3 0.072877 0.075 0.507 0.417 2113 -967 -1145 3084 -2117 ...
  114. 3263
  115.  
  116. fixed pat wt dof chisq tail prob
  117. 000 0 7 12.969 0.0728767 0.075 0.507 0.417
  118. 001 1 8 65.229 4.34778e-11 0.221 0.779 0.000
  119. 010 1 8 88.053 1.15459e-15 0.195 0.000 0.805
  120. 100 1 8 15.906 0.0437516 0.000 0.538 0.462
  121. 011 2 9 314.568 0 1.000 0.000 0.000
  122. 101 2 9 86.293 8.99742e-15 0.000 1.000 0.000
  123. 110 2 9 103.015 3.85891e-18 0.000 0.000 1.000
  124. best pat: 000 0.0728767 - -
  125. best pat: 100 0.0437516 chi(nested): 2.937 p-value for nested model: 0.0865731
  126. best pat: 101 8.99742e-15 chi(nested): 70.388 p-value for nested model: 4.87195e-17
  127.  
  128. coeffs: 0.075 0.507 0.417
  129.  
  130. ## dscore:: f_4(Base, Fit, Rbase, right2)
  131. ## genstat:: f_4(Base, Fit, right1, right2)
  132.  
  133. details: InPe_Native EEHG -0.001975 -5.385422
  134. details: Uzbekistan_BA_Bustan EEHG -0.000552 -1.549939
  135. details: Kyrgyzstan_BA_Aygirdjal EEHG 0.002591 6.757884
  136. dscore: EEHG f4: 0.000653 Z: 1.953587
  137.  
  138. details: InPe_Native WSHG -0.002455 -5.660621
  139. details: Uzbekistan_BA_Bustan WSHG -0.001627 -4.096122
  140. details: Kyrgyzstan_BA_Aygirdjal WSHG 0.002685 6.018899
  141. dscore: WSHG f4: 0.000111 Z: 0.288169
  142.  
  143. details: InPe_Native PPN -0.001605 -4.318582
  144. details: Uzbekistan_BA_Bustan PPN 0.001014 2.885139
  145. details: Kyrgyzstan_BA_Aygirdjal PPN -0.000179 -0.497343
  146. dscore: PPN f4: 0.000319 Z: 0.979044
  147.  
  148. details: InPe_Native WEHG -0.001964 -5.590686
  149. details: Uzbekistan_BA_Bustan WEHG -0.000018 -0.052433
  150. details: Kyrgyzstan_BA_Aygirdjal WEHG 0.001418 3.853076
  151. dscore: WEHG f4: 0.000435 Z: 1.373283
  152.  
  153. details: InPe_Native Anatolia_N -0.001790 -5.278427
  154. details: Uzbekistan_BA_Bustan Anatolia_N 0.001263 3.964836
  155. details: Kyrgyzstan_BA_Aygirdjal Anatolia_N 0.000307 0.897425
  156. dscore: Anatolia_N f4: 0.000634 Z: 2.106356
  157.  
  158. details: InPe_Native Iran_GanjDareh_N -0.001786 -5.360430
  159. details: Uzbekistan_BA_Bustan Iran_GanjDareh_N 0.001041 3.289253
  160. details: Kyrgyzstan_BA_Aygirdjal Iran_GanjDareh_N -0.000395 -1.146054
  161. dscore: Iran_GanjDareh_N f4: 0.000228 Z: 0.773955
  162.  
  163. details: InPe_Native CHG -0.001766 -4.884068
  164. details: Uzbekistan_BA_Bustan CHG 0.000733 2.093972
  165. details: Kyrgyzstan_BA_Aygirdjal CHG 0.000459 1.264736
  166. dscore: CHG f4: 0.000430 Z: 1.321845
  167.  
  168. details: InPe_Native ONG.SG 0.002070 5.758106
  169. details: Uzbekistan_BA_Bustan ONG.SG -0.000152 -0.445806
  170. details: Kyrgyzstan_BA_Aygirdjal ONG.SG 0.000690 1.874612
  171. dscore: ONG.SG f4: 0.000367 Z: 1.137164
  172.  
  173. details: InPe_Native Boisman_MN 0.001978 5.781531
  174. details: Uzbekistan_BA_Bustan Boisman_MN -0.000110 -0.329021
  175. details: Kyrgyzstan_BA_Aygirdjal Boisman_MN 0.001325 3.633668
  176. dscore: Boisman_MN f4: 0.000646 Z: 2.052633
  177.  
  178. gendstat: Cameroon_SMA.DG EEHG 1.954
  179. gendstat: Cameroon_SMA.DG WSHG 0.288
  180. gendstat: Cameroon_SMA.DG PPN 0.979
  181. gendstat: Cameroon_SMA.DG WEHG 1.373
  182. gendstat: Cameroon_SMA.DG Anatolia_N 2.106
  183. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 0.774
  184. gendstat: Cameroon_SMA.DG CHG 1.322
  185. gendstat: Cameroon_SMA.DG ONG.SG 1.137
  186. gendstat: Cameroon_SMA.DG Boisman_MN 2.053
  187. gendstat: EEHG WSHG -1.933
  188. gendstat: EEHG PPN -1.049
  189. gendstat: EEHG WEHG -0.944
  190. gendstat: EEHG Anatolia_N -0.071
  191. gendstat: EEHG Iran_GanjDareh_N -1.396
  192. gendstat: EEHG CHG -0.709
  193. gendstat: EEHG ONG.SG -0.919
  194. gendstat: EEHG Boisman_MN -0.023
  195. gendstat: WSHG PPN 0.552
  196. gendstat: WSHG WEHG 1.086
  197. gendstat: WSHG Anatolia_N 1.567
  198. gendstat: WSHG Iran_GanjDareh_N 0.338
  199. gendstat: WSHG CHG 0.863
  200. gendstat: WSHG ONG.SG 0.708
  201. gendstat: WSHG Boisman_MN 1.632
  202. gendstat: PPN WEHG 0.450
  203. gendstat: PPN Anatolia_N 1.525
  204. gendstat: PPN Iran_GanjDareh_N -0.307
  205. gendstat: PPN CHG 0.352
  206. gendstat: PPN ONG.SG 0.146
  207. gendstat: PPN Boisman_MN 1.084
  208. gendstat: WEHG Anatolia_N 1.072
  209. gendstat: WEHG Iran_GanjDareh_N -0.771
  210. gendstat: WEHG CHG -0.018
  211. gendstat: WEHG ONG.SG -0.238
  212. gendstat: WEHG Boisman_MN 0.781
  213. gendstat: Anatolia_N Iran_GanjDareh_N -1.705
  214. gendstat: Anatolia_N CHG -0.793
  215. gendstat: Anatolia_N ONG.SG -0.929
  216. gendstat: Anatolia_N Boisman_MN 0.049
  217. gendstat: Iran_GanjDareh_N CHG 0.738
  218. gendstat: Iran_GanjDareh_N ONG.SG 0.465
  219. gendstat: Iran_GanjDareh_N Boisman_MN 1.510
  220. gendstat: CHG ONG.SG -0.197
  221. gendstat: CHG Boisman_MN 0.705
  222. gendstat: ONG.SG Boisman_MN 1.109
  223.  
  224. ##end of qpAdm: 376.037 seconds cpu 1257.697 Mbytes in use
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