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Mar 25th, 2015
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  1. "AWT-AppKit" daemon prio=5 id=11 group=main
  2.    java.lang.Thread.State: RUNNABLE
  3.  
  4. "AWT-EventQueue-0" prio=6 id=14 group=main
  5.    java.lang.Thread.State: WAITING
  6.     at java.lang.Object.wait(Native Method)
  7.     at java.lang.Object.wait(Object.java:485)
  8.     at java.awt.EventQueue.getNextEvent(EventQueue.java:558)
  9.     at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:263)
  10.     at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
  11.     at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
  12.     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
  13.     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
  14.     at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
  15.  
  16. "AWT-Shutdown" prio=5 id=12 group=main
  17.    java.lang.Thread.State: WAITING
  18.     at java.lang.Object.wait(Native Method)
  19.     at java.lang.Object.wait(Object.java:485)
  20.     at sun.awt.AWTAutoShutdown.run(AWTAutoShutdown.java:265)
  21.     at java.lang.Thread.run(Thread.java:695)
  22.  
  23. "DestroyJavaVM" prio=5 id=22 group=main
  24.    java.lang.Thread.State: RUNNABLE
  25.  
  26. "Finalizer" daemon prio=8 id=3 group=system
  27.    java.lang.Thread.State: WAITING
  28.     at java.lang.Object.wait(Native Method)
  29.     at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
  30.     at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
  31.     at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:171)
  32.  
  33. "Java2D Disposer" daemon prio=10 id=13 group=system
  34.    java.lang.Thread.State: WAITING
  35.     at java.lang.Object.wait(Native Method)
  36.     at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
  37.     at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
  38.     at sun.java2d.Disposer.run(Disposer.java:125)
  39.     at java.lang.Thread.run(Thread.java:695)
  40.  
  41. "Reference Handler" daemon prio=10 id=2 group=system
  42.    java.lang.Thread.State: WAITING
  43.     at java.lang.Object.wait(Native Method)
  44.     at java.lang.Object.wait(Object.java:485)
  45.     at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116)
  46.  
  47. "SciJava-4a0ece36-Thread-2" prio=4 id=45 group=main
  48.    java.lang.Thread.State: RUNNABLE
  49.     at net.imglib2.img.cell.AbstractCell.localPositionToIndex(AbstractCell.java:119)
  50.     at net.imglib2.img.cell.CellRandomAccess.updatePosition(CellRandomAccess.java:478)
  51.     at net.imglib2.img.cell.CellRandomAccess.setPosition(CellRandomAccess.java:428)
  52.     at net.imagej.legacy.translate.GrayPixelHarmonizer.updateDataset(GrayPixelHarmonizer.java:125)
  53.     at net.imagej.legacy.translate.GrayDisplayCreator.makeDataset(GrayDisplayCreator.java:119)
  54.     at net.imagej.legacy.translate.AbstractDisplayCreator.getDataset(AbstractDisplayCreator.java:72)
  55.     at net.imagej.legacy.translate.GrayDisplayCreator.grayCase(GrayDisplayCreator.java:159)
  56.     at net.imagej.legacy.translate.GrayDisplayCreator.makeDisplay(GrayDisplayCreator.java:129)
  57.     at net.imagej.legacy.translate.AbstractDisplayCreator.createDisplay(AbstractDisplayCreator.java:63)
  58.     at net.imagej.legacy.translate.DefaultImageTranslator.createDisplay(DefaultImageTranslator.java:100)
  59.     at net.imagej.legacy.translate.DefaultImageTranslator.createDisplay(DefaultImageTranslator.java:84)
  60.     at net.imagej.legacy.LegacyImageMap.registerLegacyImage(LegacyImageMap.java:271)
  61.     at net.imagej.legacy.display.LegacyImageDisplayService.getActiveImageDisplay(LegacyImageDisplayService.java:119)
  62.     at net.imagej.display.ActiveImagePreprocessor.process(ActiveImagePreprocessor.java:88)
  63.     at org.scijava.module.ModuleRunner.preProcess(ModuleRunner.java:104)
  64.     at org.scijava.module.ModuleRunner.run(ModuleRunner.java:156)
  65.     at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
  66.     at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
  67.     at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
  68.     at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
  69.     at java.util.concurrent.FutureTask.run(FutureTask.java:138)
  70.     at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
  71.     at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
  72.     at java.lang.Thread.run(Thread.java:695)
  73.  
  74. "SciJava-4a0ece36-Thread-5" prio=6 id=65 group=main
  75.    java.lang.Thread.State: RUNNABLE
  76.     at java.lang.Thread.dumpThreads(Native Method)
  77.     at java.lang.Thread.getAllStackTraces(Thread.java:1569)
  78.     at org.scijava.plugins.commands.debug.DumpStack.run(DumpStack.java:80)
  79.     at org.scijava.command.CommandModule.run(CommandModule.java:201)
  80.     at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
  81.     at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
  82.     at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
  83.     at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
  84.     at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
  85.     at java.util.concurrent.FutureTask.run(FutureTask.java:138)
  86.     at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
  87.     at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
  88.     at java.lang.Thread.run(Thread.java:695)
  89.  
  90. "SciJava-4a0ece36-Thread-6" prio=6 id=66 group=main
  91.    java.lang.Thread.State: TIMED_WAITING
  92.     at sun.misc.Unsafe.park(Native Method)
  93.     at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:196)
  94.     at java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:424)
  95.     at java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:323)
  96.     at java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:874)
  97.     at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:955)
  98.     at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:917)
  99.     at java.lang.Thread.run(Thread.java:695)
  100.  
  101. "Script..." prio=4 id=44 group=main
  102.    java.lang.Thread.State: WAITING
  103.     at sun.misc.Unsafe.park(Native Method)
  104.     at java.util.concurrent.locks.LockSupport.park(LockSupport.java:156)
  105.     at java.util.concurrent.locks.AbstractQueuedSynchronizer.parkAndCheckInterrupt(AbstractQueuedSynchronizer.java:811)
  106.     at java.util.concurrent.locks.AbstractQueuedSynchronizer.doAcquireSharedInterruptibly(AbstractQueuedSynchronizer.java:969)
  107.     at java.util.concurrent.locks.AbstractQueuedSynchronizer.acquireSharedInterruptibly(AbstractQueuedSynchronizer.java:1281)
  108.     at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:218)
  109.     at java.util.concurrent.FutureTask.get(FutureTask.java:83)
  110.     at net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:251)
  111.     at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:162)
  112.     at ij.IJ.runPlugIn(IJ.java)
  113.     at ij.Executer.runCommand(Executer.java:131)
  114.     at ij.Executer.run(Executer.java:64)
  115.     at java.lang.Thread.run(Thread.java:695)
  116.  
  117. "Signal Dispatcher" daemon prio=9 id=6 group=system
  118.    java.lang.Thread.State: RUNNABLE
  119.  
  120. "Timer-0" daemon prio=5 id=18 group=main
  121.    java.lang.Thread.State: WAITING
  122.     at java.lang.Object.wait(Native Method)
  123.     at java.lang.Object.wait(Object.java:485)
  124.     at java.util.TimerThread.mainLoop(Timer.java:483)
  125.     at java.util.TimerThread.run(Timer.java:462)
  126.  
  127. "TimerQueue" daemon prio=5 id=25 group=system
  128.    java.lang.Thread.State: WAITING
  129.     at java.lang.Object.wait(Native Method)
  130.     at javax.swing.TimerQueue.run(TimerQueue.java:232)
  131.     at java.lang.Thread.run(Thread.java:695)
  132.  
  133. "zSelector" prio=6 id=27 group=main
  134.    java.lang.Thread.State: WAITING
  135.     at java.lang.Object.wait(Native Method)
  136.     at java.lang.Object.wait(Object.java:485)
  137.     at ij.gui.StackWindow.run(StackWindow.java:228)
  138.     at java.lang.Thread.run(Thread.java:695)
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