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sudo -E pdebuild

robbinespu
Feb 22nd, 2021
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  1. > Tue 23 Feb 2021 02:53:03 AM +08  (master)
  2. robbi@debian: pts/0: /home/robbi/workspace/debian_stuff/new/scanpy
  3. └─ $ sudo -E pdebuild
  4. dpkg-checkbuilddeps: error: Unmet build dependencies: debhelper-compat (= 13) python3-importlib-metadata python3-anndata umap-learn sinfo python3-zarr
  5. W: Unmet build-dependency in source
  6. dpkg-source: info: using options from scanpy/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  7. dpkg-source: info: using patch list from debian/patches/series
  8. dpkg-source: info: applying avoid_setuptools_scm.patch
  9. dh clean --with python3 --buildsystem=pybuild
  10.    dh_auto_clean -O--buildsystem=pybuild
  11.         pybuild --clean -i python{version} -p 3.7
  12. I: pybuild base:217: python3.7 setup.py clean
  13. running clean
  14. removing '/home/robbi/workspace/debian_stuff/new/scanpy/.pybuild/cpython3_3.7_scanpy/build' (and everything under it)
  15. /usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version'
  16.   warnings.warn(msg)
  17. 'build/bdist.linux-amd64' does not exist -- can't clean it
  18. 'build/scripts-3.7' does not exist -- can't clean it
  19.         rm -rf .pybuild/
  20.         find . -name \*.pyc -exec rm {} \;
  21.    dh_autoreconf_clean -O--buildsystem=pybuild
  22.    dh_clean -O--buildsystem=pybuild
  23.         rm -f debian/debhelper-build-stamp
  24.         rm -rf debian/.debhelper/
  25.         rm -f -- debian/python3-scanpy.substvars debian/files
  26.         rm -fr -- debian/python3-scanpy/ debian/tmp/
  27.         find .  \( \( \
  28.                 \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
  29.                 \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
  30.                  -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
  31.                  -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
  32.                  -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
  33.                 \) -exec rm -f {} + \) -o \
  34.                 \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
  35. dpkg-source: info: using options from scanpy/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  36. dpkg-source: info: using source format '3.0 (quilt)'
  37. dpkg-source: info: building scanpy using existing ./scanpy_1.6.0.orig.tar.gz
  38. dpkg-source: info: using patch list from debian/patches/series
  39. dpkg-source: info: building scanpy in scanpy_1.6.0-1.debian.tar.xz
  40. dpkg-source: info: building scanpy in scanpy_1.6.0-1.dsc
  41. I: Generating source changes file for original dsc
  42. dpkg-genchanges: info: including full source code in upload
  43. dpkg-source: info: using options from scanpy/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  44. dpkg-source: info: unapplying avoid_setuptools_scm.patch
  45. I: pbuilder: network access will be disabled during build
  46. I: Current time: Tue Feb 23 02:53:11 +08 2021
  47. I: pbuilder-time-stamp: 1614019991
  48. I: Building the build Environment
  49. I: extracting base tarball [/var/cache/pbuilder/base.tgz]
  50. I: copying local configuration
  51. I: mounting /proc filesystem
  52. I: mounting /sys filesystem
  53. I: creating /{dev,run}/shm
  54. I: mounting /dev/pts filesystem
  55. I: redirecting /dev/ptmx to /dev/pts/ptmx
  56. I: Mounting /var/cache/pbuilder/result
  57. I: policy-rc.d already exists
  58. I: Obtaining the cached apt archive contents
  59. I: Copying source file
  60. I: copying [../scanpy_1.6.0-1.dsc]
  61. I: copying [../scanpy_1.6.0.orig.tar.gz]
  62. I: copying [../scanpy_1.6.0-1.debian.tar.xz]
  63. I: Extracting source
  64. dpkg-source: warning: extracting unsigned source package (scanpy_1.6.0-1.dsc)
  65. dpkg-source: info: extracting scanpy in scanpy-1.6.0
  66. dpkg-source: info: unpacking scanpy_1.6.0.orig.tar.gz
  67. dpkg-source: info: unpacking scanpy_1.6.0-1.debian.tar.xz
  68. dpkg-source: info: using patch list from debian/patches/series
  69. dpkg-source: info: applying avoid_setuptools_scm.patch
  70. I: Not using root during the build.
  71. I: Installing the build-deps
  72. I: user script /var/cache/pbuilder/build/6458/tmp/hooks/D70results starting
  73. Get:1 http://mirror.0x.sg/debian sid InRelease [153 kB]
  74. Get:2 http://mirror.0x.sg/debian sid/main Sources.diff/Index [63.6 kB]
  75. Get:3 http://mirror.0x.sg/debian sid/main amd64 Packages.diff/Index [63.6 kB]
  76. Get:4 http://mirror.0x.sg/debian sid/main Sources T-2021-02-22-1359.38-F-2021-02-22-0159.52.pdiff [16.8 kB]
  77. Get:4 http://mirror.0x.sg/debian sid/main Sources T-2021-02-22-1359.38-F-2021-02-22-0159.52.pdiff [16.8 kB]
  78. Get:5 http://mirror.0x.sg/debian sid/main amd64 Packages T-2021-02-22-1359.38-F-2021-02-22-0159.52.pdiff [30.3 kB]
  79. Get:5 http://mirror.0x.sg/debian sid/main amd64 Packages T-2021-02-22-1359.38-F-2021-02-22-0159.52.pdiff [30.3 kB]
  80. Fetched 328 kB in 8s (41.1 kB/s)
  81. Reading package lists...
  82. I: user script /var/cache/pbuilder/build/6458/tmp/hooks/D70results finished
  83.  -> Attempting to satisfy build-dependencies
  84.  -> Creating pbuilder-satisfydepends-dummy package
  85. Package: pbuilder-satisfydepends-dummy
  86. Version: 0.invalid.0
  87. Architecture: amd64
  88. Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
  89. Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
  90.  This package was created automatically by pbuilder to satisfy the
  91.  build-dependencies of the package being currently built.
  92. Depends: debhelper-compat (= 13), dh-python, python3-setuptools, python3-all, python3-wheel, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, python3-h5py, python3-tables, python3-tqdm, python3-importlib-metadata, python3-sklearn, python3-statsmodels, python3-patsy, python3-networkx, python3-natsort, python3-joblib, python3-numba, python3-anndata, umap-learn, sinfo, python3-harmony, python3-zarr
  93. dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'"/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -sa
  94. dpkg-buildpackage: info: source package scanpy
  95. dpkg-buildpackage: info: source version 1.6.0-1
  96. dpkg-buildpackage: info: source distribution UNRELEASED
  97. dpkg-buildpackage: info: source changed by Steffen Moeller <moeller@debian.org>
  98.  dpkg-source --before-build .
  99. dpkg-buildpackage: info: host architecture amd64
  100. dpkg-source: info: using options from scanpy-1.6.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  101.  debian/rules clean
  102. dh clean --with python3 --buildsystem=pybuild
  103.    dh_auto_clean -O--buildsystem=pybuild
  104.         install -d /build/scanpy-1.6.0/debian/.debhelper/generated/_source/home
  105.         pybuild --clean -i python{version} -p 3.9
  106. I: pybuild base:232: python3.9 setup.py clean
  107. /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version'
  108.   warnings.warn(msg)
  109. running clean
  110. removing '/build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build' (and everything under it)
  111. 'build/bdist.linux-x86_64' does not exist -- can't clean it
  112. 'build/scripts-3.9' does not exist -- can't clean it
  113.         rm -rf .pybuild/
  114.         find . -name \*.pyc -exec rm {} \;
  115.    dh_autoreconf_clean -O--buildsystem=pybuild
  116.    dh_clean -O--buildsystem=pybuild
  117.         rm -f debian/debhelper-build-stamp
  118.         rm -rf debian/.debhelper/
  119.         rm -f -- debian/python3-scanpy.substvars debian/files
  120.         rm -fr -- debian/python3-scanpy/ debian/tmp/
  121.         find .  \( \( \
  122.                 \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
  123.                 \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
  124.                  -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
  125.                  -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
  126.                  -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
  127.                 \) -exec rm -f {} + \) -o \
  128.                 \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
  129.  dpkg-source -b .
  130. dpkg-source: info: using options from scanpy-1.6.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
  131. dpkg-source: info: using source format '3.0 (quilt)'
  132. dpkg-source: info: building scanpy using existing ./scanpy_1.6.0.orig.tar.gz
  133. dpkg-source: info: using patch list from debian/patches/series
  134. dpkg-source: info: building scanpy in scanpy_1.6.0-1.debian.tar.xz
  135. dpkg-source: info: building scanpy in scanpy_1.6.0-1.dsc
  136.  debian/rules binary
  137. dh binary --with python3 --buildsystem=pybuild
  138.    dh_update_autotools_config -O--buildsystem=pybuild
  139.    dh_autoreconf -O--buildsystem=pybuild
  140.    dh_auto_configure -O--buildsystem=pybuild
  141.         install -d /build/scanpy-1.6.0/debian/.debhelper/generated/_source/home
  142.         pybuild --configure -i python{version} -p 3.9
  143. I: pybuild base:232: python3.9 setup.py config
  144. /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version'
  145.   warnings.warn(msg)
  146. running config
  147.    dh_auto_build -O--buildsystem=pybuild
  148.         pybuild --build -i python{version} -p 3.9
  149. I: pybuild base:232: /usr/bin/python3 setup.py build
  150. /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'use_scm_version'
  151.   warnings.warn(msg)
  152. running build
  153. running build_py
  154. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  155. copying scanpy/get.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  156. copying scanpy/_settings.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  157. copying scanpy/readwrite.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  158. copying scanpy/_compat.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  159. copying scanpy/cli.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  160. copying scanpy/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  161. copying scanpy/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  162. copying scanpy/__main__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  163. copying scanpy/logging.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy
  164. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/neighbors
  165. copying scanpy/neighbors/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/neighbors
  166. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/sim_models
  167. copying scanpy/sim_models/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/sim_models
  168. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  169. copying scanpy/api/pl.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  170. copying scanpy/api/queries.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  171. copying scanpy/api/export_to.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  172. copying scanpy/api/datasets.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  173. copying scanpy/api/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  174. copying scanpy/api/tl.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  175. copying scanpy/api/pp.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  176. copying scanpy/api/logging.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/api
  177. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  178. copying scanpy/preprocessing/_pca.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  179. copying scanpy/preprocessing/_docs.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  180. copying scanpy/preprocessing/_combat.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  181. copying scanpy/preprocessing/_recipes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  182. copying scanpy/preprocessing/_qc.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  183. copying scanpy/preprocessing/_distributed.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  184. copying scanpy/preprocessing/_highly_variable_genes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  185. copying scanpy/preprocessing/_normalization.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  186. copying scanpy/preprocessing/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  187. copying scanpy/preprocessing/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  188. copying scanpy/preprocessing/_simple.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing
  189. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/queries
  190. copying scanpy/queries/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/queries
  191. copying scanpy/queries/_queries.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/queries
  192. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  193. copying scanpy/datasets/_ebi_expression_atlas.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  194. copying scanpy/datasets/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  195. copying scanpy/datasets/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  196. copying scanpy/datasets/_datasets.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/datasets
  197. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  198. copying scanpy/tools/_utils_clustering.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  199. copying scanpy/tools/_dendrogram.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  200. copying scanpy/tools/_tsne.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  201. copying scanpy/tools/_rank_genes_groups.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  202. copying scanpy/tools/_dpt.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  203. copying scanpy/tools/_tsne_fix.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  204. copying scanpy/tools/_marker_gene_overlap.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  205. copying scanpy/tools/_ingest.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  206. copying scanpy/tools/_pca.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  207. copying scanpy/tools/_score_genes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  208. copying scanpy/tools/_diffmap.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  209. copying scanpy/tools/_paga.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  210. copying scanpy/tools/_leiden.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  211. copying scanpy/tools/_top_genes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  212. copying scanpy/tools/_sim.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  213. copying scanpy/tools/_draw_graph.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  214. copying scanpy/tools/_embedding_density.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  215. copying scanpy/tools/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  216. copying scanpy/tools/_umap.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  217. copying scanpy/tools/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  218. copying scanpy/tools/_louvain.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/tools
  219. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external
  220. copying scanpy/external/exporting.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external
  221. copying scanpy/external/pl.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external
  222. copying scanpy/external/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external
  223. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  224. copying scanpy/plotting/_dotplot.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  225. copying scanpy/plotting/_docs.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  226. copying scanpy/plotting/_rcmod.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  227. copying scanpy/plotting/_baseplot_class.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  228. copying scanpy/plotting/_qc.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  229. copying scanpy/plotting/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  230. copying scanpy/plotting/_stacked_violin.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  231. copying scanpy/plotting/_matrixplot.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  232. copying scanpy/plotting/_preprocessing.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  233. copying scanpy/plotting/palettes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  234. copying scanpy/plotting/_utils.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  235. copying scanpy/plotting/_anndata.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting
  236. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing/_deprecated
  237. copying scanpy/preprocessing/_deprecated/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing/_deprecated
  238. copying scanpy/preprocessing/_deprecated/highly_variable_genes.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/preprocessing/_deprecated
  239. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  240. copying scanpy/external/tl/_palantir.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  241. copying scanpy/external/tl/_harmony_timeseries.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  242. copying scanpy/external/tl/_wishbone.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  243. copying scanpy/external/tl/_phenograph.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  244. copying scanpy/external/tl/_phate.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  245. copying scanpy/external/tl/_trimap.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  246. copying scanpy/external/tl/_pypairs.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  247. copying scanpy/external/tl/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  248. copying scanpy/external/tl/_sam.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/tl
  249. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  250. copying scanpy/external/pp/_dca.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  251. copying scanpy/external/pp/_bbknn.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  252. copying scanpy/external/pp/_scvi.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  253. copying scanpy/external/pp/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  254. copying scanpy/external/pp/_harmony_integrate.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  255. copying scanpy/external/pp/_magic.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  256. copying scanpy/external/pp/_mnn_correct.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/external/pp
  257. creating /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting/_tools
  258. copying scanpy/plotting/_tools/paga.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting/_tools
  259. copying scanpy/plotting/_tools/scatterplots.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting/_tools
  260. copying scanpy/plotting/_tools/__init__.py -> /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/plotting/_tools
  261. running egg_info
  262. creating scanpy.egg-info
  263. writing scanpy.egg-info/PKG-INFO
  264. writing dependency_links to scanpy.egg-info/dependency_links.txt
  265. writing entry points to scanpy.egg-info/entry_points.txt
  266. writing requirements to scanpy.egg-info/requires.txt
  267. writing top-level names to scanpy.egg-info/top_level.txt
  268. writing manifest file 'scanpy.egg-info/SOURCES.txt'
  269. reading manifest file 'scanpy.egg-info/SOURCES.txt'
  270. reading manifest template 'MANIFEST.in'
  271. warning: no previously-included files found matching '.coveragerc'
  272. warning: no previously-included files found matching '.editorconfig'
  273. warning: no previously-included files found matching '.gitattributes'
  274. warning: no previously-included files found matching '.gitignore'
  275. warning: no previously-included files found matching '.readthedocs.yml'
  276. warning: no previously-included files found matching '.travis.yml'
  277. warning: no previously-included files found matching 'CONTRIBUTING.md'
  278. no previously-included directories found matching 'docs'
  279. writing manifest file 'scanpy.egg-info/SOURCES.txt'
  280.    dh_auto_test -O--buildsystem=pybuild
  281.         pybuild --test -i python{version} -p 3.9
  282. I: pybuild base:232: cd /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build; python3.9 -m unittest discover -v
  283. scanpy (unittest.loader._FailedTest) ... ERROR
  284.  
  285. ======================================================================
  286. ERROR: scanpy (unittest.loader._FailedTest)
  287. ----------------------------------------------------------------------
  288. ImportError: Failed to import test module: scanpy
  289. Traceback (most recent call last):
  290.   File "/usr/lib/python3.9/unittest/loader.py", line 470, in _find_test_path
  291.     package = self._get_module_from_name(name)
  292.   File "/usr/lib/python3.9/unittest/loader.py", line 377, in _get_module_from_name
  293.     __import__(name)
  294.   File "/build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/__init__.py", line 3, in <module>
  295.     from ._utils import pkg_version, check_versions, annotate_doc_types
  296.   File "/build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/_utils.py", line 22, in <module>
  297.     from ._settings import settings
  298.   File "/build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/_settings.py", line 11, in <module>
  299.     from . import logging
  300.   File "/build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build/scanpy/logging.py", line 12, in <module>
  301.     from sinfo import sinfo
  302. ModuleNotFoundError: No module named 'sinfo'
  303.  
  304.  
  305. ----------------------------------------------------------------------
  306. Ran 1 test in 0.003s
  307.  
  308. FAILED (errors=1)
  309. E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd /build/scanpy-1.6.0/.pybuild/cpython3_3.9_scanpy/build; python3.9 -m unittest discover -v
  310.         rm -fr -- /tmp/dh-xdg-rundir-ipKmklqM
  311. dh_auto_test: error: pybuild --test -i python{version} -p 3.9 returned exit code 13
  312. make: *** [debian/rules:8: binary] Error 25
  313. dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
  314. I: copying local configuration
  315. E: Failed autobuilding of package
  316.  
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