mohameds-mbp-2:webapp_dev mohdsammour$ docker build -t teleogene -f Dockerfile .
Sending build context to Docker daemon 229.6 MB
Step 1/26 : FROM ubuntu:zesty
zesty: Pulling from library/ubuntu
19cb2bca2aca: Pull complete
875ccedcbf3f: Pull complete
6449dd44f265: Pull complete
09719d1aba4a: Pull complete
da0d7f3ddeb8: Pull complete
Digest: sha256:cfa1858e82f340ab6fdd6d52a49b5c792311cdfd74c8d50420d99753450707ae
Status: Downloaded newer image for ubuntu:zesty
 ---> 8694892af3c5
Step 2/26 : ENV PYTHONUNBUFFERED 1
 ---> Running in 949c2acaf865
 ---> 0da15a1f0520
Removing intermediate container 949c2acaf865
Step 3/26 : RUN echo "deb http://mirrors.kernel.org/ubuntu trusty main multiverse universe" >> /etc/apt/sources.list
 ---> Running in 49894f803a88
 ---> 7e00c2ab19d1
Removing intermediate container 49894f803a88
Step 4/26 : RUN echo "deb http://mirrors.kernel.org/ubuntu yakkety main multiverse universe" >> /etc/apt/sources.list
 ---> Running in 6da404d98cf3
 ---> fd26f9d43ada
Removing intermediate container 6da404d98cf3
Step 5/26 : RUN apt-get update
 ---> Running in dfe994601013
Get:1 http://security.ubuntu.com/ubuntu zesty-security InRelease [89.2 kB]
Ign:2 http://mirrors.kernel.org/ubuntu trusty InRelease
Get:3 http://archive.ubuntu.com/ubuntu zesty InRelease [243 kB]
Get:4 http://mirrors.kernel.org/ubuntu yakkety InRelease [247 kB]
Get:5 http://security.ubuntu.com/ubuntu zesty-security/universe Sources [12.6 kB]
Get:6 http://security.ubuntu.com/ubuntu zesty-security/universe amd64 Packages [47.5 kB]
Get:7 http://mirrors.kernel.org/ubuntu trusty Release [58.5 kB]
Get:8 http://mirrors.kernel.org/ubuntu yakkety/universe amd64 Packages [10.1 MB]
Get:9 http://security.ubuntu.com/ubuntu zesty-security/main amd64 Packages [105 kB]
Get:10 http://archive.ubuntu.com/ubuntu zesty-updates InRelease [89.2 kB]
Get:11 http://security.ubuntu.com/ubuntu zesty-security/multiverse amd64 Packages [1819 B]
Get:12 http://archive.ubuntu.com/ubuntu zesty-backports InRelease [89.2 kB]
Get:13 http://security.ubuntu.com/ubuntu zesty-security/restricted amd64 Packages [2880 B]
Get:14 http://archive.ubuntu.com/ubuntu zesty/universe Sources [10.7 MB]
Get:15 http://mirrors.kernel.org/ubuntu yakkety/multiverse amd64 Packages [179 kB]
Get:16 http://mirrors.kernel.org/ubuntu yakkety/main amd64 Packages [1593 kB]
Get:17 http://mirrors.kernel.org/ubuntu trusty Release.gpg [933 B]
Get:18 http://mirrors.kernel.org/ubuntu trusty/main amd64 Packages [1743 kB]
Get:19 http://mirrors.kernel.org/ubuntu trusty/universe amd64 Packages [7589 kB]
Get:20 http://mirrors.kernel.org/ubuntu trusty/multiverse amd64 Packages [169 kB]
Get:21 http://archive.ubuntu.com/ubuntu zesty/multiverse amd64 Packages [189 kB]
Get:22 http://archive.ubuntu.com/ubuntu zesty/restricted amd64 Packages [14.3 kB]
Get:23 http://archive.ubuntu.com/ubuntu zesty/universe amd64 Packages [10.5 MB]
Get:24 http://archive.ubuntu.com/ubuntu zesty/main amd64 Packages [1574 kB]
Get:25 http://archive.ubuntu.com/ubuntu zesty-updates/universe Sources [22.4 kB]
Get:26 http://archive.ubuntu.com/ubuntu zesty-updates/universe amd64 Packages [84.2 kB]
Get:27 http://archive.ubuntu.com/ubuntu zesty-updates/multiverse amd64 Packages [4417 B]
Get:28 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 Packages [161 kB]
Get:29 http://archive.ubuntu.com/ubuntu zesty-updates/restricted amd64 Packages [2880 B]
Get:30 http://archive.ubuntu.com/ubuntu zesty-backports/universe amd64 Packages [3089 B]
Get:31 http://archive.ubuntu.com/ubuntu zesty-backports/main amd64 Packages [1446 B]
Fetched 45.7 MB in 1min 37s (467 kB/s)
Reading package lists...
 ---> 830adad2352c
Removing intermediate container dfe994601013
Step 6/26 : RUN apt-get -y install python curl unzip && cd /tmp && curl "https://s3.amazonaws.com/aws-cli/awscli-bundle.zip" -o "awscli-bundle.zip" &&     unzip awscli-bundle.zip && ./awscli-bundle/install -i /usr/local/aws -b /usr/local/bin/aws &&     rm awscli-bundle.zip && rm -rf awscli-bundle
 ---> Running in f7c159a933e7
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  bzip2 ca-certificates file krb5-locales libasn1-8-heimdal libcurl3 libexpat1
  libffi6 libgmp10 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal
  libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4
  libhx509-5-heimdal libidn11 libidn2-0 libk5crypto3 libkeyutils1
  libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common
  libmagic-mgc libmagic1 libnettle6 libp11-kit0 libpsl5 libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libroken18-heimdal librtmp1
  libsasl2-2 libsasl2-modules libsasl2-modules-db libssl1.0.0 libtasn1-6
  libunistring0 libwind0-heimdal mime-support openssl publicsuffix
  python-minimal python2.7 python2.7-minimal xz-utils
Suggested packages:
  bzip2-doc gnutls-bin krb5-doc krb5-user libsasl2-modules-gssapi-mit
  | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp
  libsasl2-modules-sql python-doc python-tk python2.7-doc binutils
  binfmt-support zip
The following NEW packages will be installed:
  bzip2 ca-certificates curl file krb5-locales libasn1-8-heimdal libcurl3
  libexpat1 libffi6 libgmp10 libgnutls30 libgssapi-krb5-2 libgssapi3-heimdal
  libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4
  libhx509-5-heimdal libidn11 libidn2-0 libk5crypto3 libkeyutils1
  libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common
  libmagic-mgc libmagic1 libnettle6 libp11-kit0 libpsl5 libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libroken18-heimdal librtmp1
  libsasl2-2 libsasl2-modules libsasl2-modules-db libssl1.0.0 libtasn1-6
  libunistring0 libwind0-heimdal mime-support openssl publicsuffix python
  python-minimal python2.7 python2.7-minimal unzip xz-utils
0 upgraded, 53 newly installed, 0 to remove and 2 not upgraded.
Need to get 10.2 MB of archives.
After this operation, 41.2 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu zesty/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB]
Get:2 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpython2.7-minimal amd64 2.7.13-2 [338 kB]
Get:3 http://archive.ubuntu.com/ubuntu zesty/main amd64 python2.7-minimal amd64 2.7.13-2 [1327 kB]
Get:4 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-minimal amd64 2.7.13-2 [28.2 kB]
Get:5 http://archive.ubuntu.com/ubuntu zesty/main amd64 mime-support all 3.60ubuntu1 [30.1 kB]
Get:6 http://archive.ubuntu.com/ubuntu zesty/main amd64 libexpat1 amd64 2.2.0-2 [72.2 kB]
Get:7 http://archive.ubuntu.com/ubuntu zesty/main amd64 libffi6 amd64 3.2.1-6 [17.7 kB]
Get:8 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu11.2 [1081 kB]
Get:9 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpython2.7-stdlib amd64 2.7.13-2 [1898 kB]
Get:10 http://archive.ubuntu.com/ubuntu zesty/main amd64 python2.7 amd64 2.7.13-2 [229 kB]
Get:11 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpython-stdlib amd64 2.7.13-2 [7774 B]
Get:12 http://archive.ubuntu.com/ubuntu zesty/main amd64 python amd64 2.7.13-2 [139 kB]
Get:13 http://archive.ubuntu.com/ubuntu zesty/main amd64 bzip2 amd64 1.0.6-8.1 [33.4 kB]
Get:14 http://archive.ubuntu.com/ubuntu zesty/main amd64 libmagic-mgc amd64 1:5.29-3 [181 kB]
Get:15 http://archive.ubuntu.com/ubuntu zesty/main amd64 libmagic1 amd64 1:5.29-3 [68.3 kB]
Get:16 http://archive.ubuntu.com/ubuntu zesty/main amd64 file amd64 1:5.29-3 [21.8 kB]
Get:17 http://archive.ubuntu.com/ubuntu zesty/main amd64 libroken18-heimdal amd64 7.1.0+dfsg-9ubuntu1 [41.0 kB]
Get:18 http://archive.ubuntu.com/ubuntu zesty/main amd64 libasn1-8-heimdal amd64 7.1.0+dfsg-9ubuntu1 [176 kB]
Get:19 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [240 kB]
Get:20 http://archive.ubuntu.com/ubuntu zesty/main amd64 libnettle6 amd64 3.3-1 [92.4 kB]
Get:21 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhogweed4 amd64 3.3-1 [135 kB]
Get:22 http://archive.ubuntu.com/ubuntu zesty/main amd64 libidn11 amd64 1.33-1 [45.0 kB]
Get:23 http://archive.ubuntu.com/ubuntu zesty/main amd64 libp11-kit0 amd64 0.23.3-5 [107 kB]
Get:24 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libtasn1-6 amd64 4.10-1ubuntu0.1 [35.5 kB]
Get:25 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libgnutls30 amd64 3.5.6-4ubuntu4.1 [626 kB]
Get:26 http://archive.ubuntu.com/ubuntu zesty/main amd64 libheimbase1-heimdal amd64 7.1.0+dfsg-9ubuntu1 [29.4 kB]
Get:27 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhcrypto4-heimdal amd64 7.1.0+dfsg-9ubuntu1 [87.4 kB]
Get:28 http://archive.ubuntu.com/ubuntu zesty/main amd64 libwind0-heimdal amd64 7.1.0+dfsg-9ubuntu1 [48.2 kB]
Get:29 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhx509-5-heimdal amd64 7.1.0+dfsg-9ubuntu1 [108 kB]
Get:30 http://archive.ubuntu.com/ubuntu zesty/main amd64 libkrb5-26-heimdal amd64 7.1.0+dfsg-9ubuntu1 [206 kB]
Get:31 http://archive.ubuntu.com/ubuntu zesty/main amd64 libheimntlm0-heimdal amd64 7.1.0+dfsg-9ubuntu1 [15.1 kB]
Get:32 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgssapi3-heimdal amd64 7.1.0+dfsg-9ubuntu1 [96.7 kB]
Get:33 http://archive.ubuntu.com/ubuntu zesty/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-2ubuntu1 [14.3 kB]
Get:34 http://archive.ubuntu.com/ubuntu zesty/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-2ubuntu1 [48.8 kB]
Get:35 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libldap-common all 2.4.44+dfsg-3ubuntu2.1 [16.8 kB]
Get:36 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-3ubuntu2.1 [154 kB]
Get:37 http://archive.ubuntu.com/ubuntu zesty/main amd64 libsasl2-modules amd64 2.1.27~101-g0780600+dfsg-2ubuntu1 [47.6 kB]
Get:38 http://archive.ubuntu.com/ubuntu zesty/main amd64 xz-utils amd64 5.2.2-1.2 [83.2 kB]
Get:39 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 openssl amd64 1.0.2g-1ubuntu11.2 [491 kB]
Get:40 http://archive.ubuntu.com/ubuntu zesty/main amd64 ca-certificates all 20161130 [193 kB]
Get:41 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 krb5-locales all 1.15-1ubuntu0.1 [14.2 kB]
Get:42 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libkrb5support0 amd64 1.15-1ubuntu0.1 [31.9 kB]
Get:43 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libk5crypto3 amd64 1.15-1ubuntu0.1 [84.8 kB]
Get:44 http://archive.ubuntu.com/ubuntu zesty/main amd64 libkeyutils1 amd64 1.5.9-9ubuntu1 [9512 B]
Get:45 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libkrb5-3 amd64 1.15-1ubuntu0.1 [275 kB]
Get:46 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libgssapi-krb5-2 amd64 1.15-1ubuntu0.1 [120 kB]
Get:47 http://archive.ubuntu.com/ubuntu zesty/main amd64 libidn2-0 amd64 0.16-1 [47.6 kB]
Get:48 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpsl5 amd64 0.17.0-4 [39.4 kB]
Get:49 http://archive.ubuntu.com/ubuntu zesty/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:50 http://archive.ubuntu.com/ubuntu zesty/main amd64 publicsuffix all 20170202-1 [92.3 kB]
Get:51 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libcurl3 amd64 7.52.1-4ubuntu1.1 [194 kB]
Get:52 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 curl amd64 7.52.1-4ubuntu1.1 [146 kB]
Get:53 http://archive.ubuntu.com/ubuntu zesty/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Archive:  awscli-bundle.zip
  inflating: awscli-bundle/install
  inflating: awscli-bundle/packages/awscli-1.11.112.tar.gz
  inflating: awscli-bundle/packages/jmespath-0.9.3.tar.gz
  inflating: awscli-bundle/packages/argparse-1.2.1.tar.gz
  inflating: awscli-bundle/packages/six-1.10.0.tar.gz
  inflating: awscli-bundle/packages/ordereddict-1.1.tar.gz
  inflating: awscli-bundle/packages/colorama-0.3.7.zip
  inflating: awscli-bundle/packages/futures-3.1.1.tar.gz
  inflating: awscli-bundle/packages/docutils-0.13.1.tar.gz
  inflating: awscli-bundle/packages/simplejson-3.3.0.tar.gz
  inflating: awscli-bundle/packages/python-dateutil-2.6.0.tar.gz
  inflating: awscli-bundle/packages/PyYAML-3.12.tar.gz
  inflating: awscli-bundle/packages/s3transfer-0.1.10.tar.gz
  inflating: awscli-bundle/packages/virtualenv-15.1.0.tar.gz
  inflating: awscli-bundle/packages/botocore-1.5.75.tar.gz
  inflating: awscli-bundle/packages/rsa-3.4.2.tar.gz
  inflating: awscli-bundle/packages/pyasn1-0.2.3.tar.gz
Running cmd: /usr/bin/python virtualenv.py --python /usr/bin/python /usr/local/aws
Running cmd: /usr/local/aws/bin/pip install --no-index --find-links file:///tmp/awscli-bundle/packages awscli-1.11.112.tar.gz
You can now run: /usr/local/bin/aws --version
 ---> 2be04d706b20
Removing intermediate container f7c159a933e7
Step 7/26 : RUN apt-get -y install nginx s3cmd
 ---> Running in 3301859c37d8
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  fontconfig-config fonts-dejavu-core geoip-database libfontconfig1
  libfreetype6 libgd3 libgeoip1 libicu57 libjbig0 libjpeg-turbo8 libjpeg8
  libnginx-mod-http-geoip libnginx-mod-http-image-filter
  libnginx-mod-http-xslt-filter libnginx-mod-mail libnginx-mod-stream
  libpng16-16 libtiff5 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
  libxml2 libxpm4 libxslt1.1 nginx-common nginx-core python-dateutil
  python-magic python-six sgml-base tzdata ucf xml-core
Suggested packages:
  libgd-tools geoip-bin fcgiwrap nginx-doc ssl-cert sgml-base-doc debhelper
The following NEW packages will be installed:
  fontconfig-config fonts-dejavu-core geoip-database libfontconfig1
  libfreetype6 libgd3 libgeoip1 libicu57 libjbig0 libjpeg-turbo8 libjpeg8
  libnginx-mod-http-geoip libnginx-mod-http-image-filter
  libnginx-mod-http-xslt-filter libnginx-mod-mail libnginx-mod-stream
  libpng16-16 libtiff5 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
  libxml2 libxpm4 libxslt1.1 nginx nginx-common nginx-core python-dateutil
  python-magic python-six s3cmd sgml-base tzdata ucf xml-core
0 upgraded, 38 newly installed, 0 to remove and 2 not upgraded.
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Get:37 http://archive.ubuntu.com/ubuntu zesty/universe amd64 python-magic all 1:5.29-3 [5934 B]
Get:38 http://archive.ubuntu.com/ubuntu zesty/universe amd64 s3cmd all 1.6.1-1 [92.6 kB]
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debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1 /usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype

Current default time zone: 'Etc/UTC'
Local time is now:      Mon Jun 26 18:27:42 UTC 2017.
Universal Time is now:  Mon Jun 26 18:27:42 UTC 2017.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up nginx-common (1.10.3-1ubuntu3) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1 /usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up python-magic (1:5.29-3) ...
Setting up libjpeg-turbo8:amd64 (1.5.1-0ubuntu1) ...
Setting up sgml-base (1.29) ...
Setting up libgeoip1:amd64 (1.6.9-4) ...
Setting up libicu57:amd64 (57.1-5ubuntu0.1) ...
Setting up ucf (3.0036) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (Can't locate Term/ReadLine.pm in @INC (you may need to install the Term::ReadLine module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1 /usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base .) at /usr/share/perl5/Debconf/FrontEnd/Readline.pm line 7.)
debconf: falling back to frontend: Teletype
Setting up libxml2:amd64 (2.9.4+dfsg1-2.2) ...
Setting up libfreetype6:amd64 (2.6.3-3ubuntu2.2) ...
Setting up libxslt1.1:amd64 (1.1.29-2ubuntu0.1) ...
Setting up python-six (1.10.0-3) ...
Processing triggers for libc-bin (2.24-9ubuntu2.2) ...
Setting up libnginx-mod-mail (1.10.3-1ubuntu3) ...
Setting up libnginx-mod-http-xslt-filter (1.10.3-1ubuntu3) ...
Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ...
Setting up xml-core (0.17) ...
Setting up libnginx-mod-http-geoip (1.10.3-1ubuntu3) ...
Setting up libx11-data (2:1.6.4-3) ...
Setting up libxau6:amd64 (1:1.0.8-1) ...
Setting up libwebp6:amd64 (0.5.2-1) ...
Setting up libjpeg8:amd64 (8c-2ubuntu8) ...
Setting up fontconfig-config (2.11.94-0ubuntu2) ...
Setting up libnginx-mod-stream (1.10.3-1ubuntu3) ...
Setting up libtiff5:amd64 (4.0.7-5) ...
Setting up python-dateutil (2.5.3-2) ...
Setting up s3cmd (1.6.1-1) ...
Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ...
Setting up libfontconfig1:amd64 (2.11.94-0ubuntu2) ...
Setting up libx11-6:amd64 (2:1.6.4-3) ...
Setting up libxpm4:amd64 (1:3.5.12-1) ...
Setting up libgd3:amd64 (2.2.4-2) ...
Setting up libnginx-mod-http-image-filter (1.10.3-1ubuntu3) ...
Setting up nginx-core (1.10.3-1ubuntu3) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up nginx (1.10.3-1ubuntu3) ...
Processing triggers for libc-bin (2.24-9ubuntu2.2) ...
Processing triggers for sgml-base (1.29) ...
 ---> 4deacc64131c
Removing intermediate container 3301859c37d8
Step 8/26 : RUN rm -rf /etc/nginx/conf.d/*
 ---> Running in 8790306afdc8
 ---> e16ab3a6369a
Removing intermediate container 8790306afdc8
Step 9/26 : RUN apt-get -y install python-pip
 ---> Running in c88117456f6d
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  binutils build-essential cpp cpp-6 dbus dpkg-dev fakeroot g++ g++-6 gcc
  gcc-6 gir1.2-glib-2.0 libalgorithm-diff-perl libalgorithm-diff-xs-perl
  libalgorithm-merge-perl libapparmor1 libasan3 libatomic1 libc-dev-bin
  libc6-dev libcc1-0 libcilkrts5 libdbus-1-3 libdbus-glib-1-2 libdpkg-perl
  libexpat1-dev libfakeroot libfile-fcntllock-perl libgcc-6-dev libgdbm3
  libgirepository-1.0-1 libglib2.0-0 libglib2.0-data libgomp1 libisl15 libitm1
  liblsan0 libmpc3 libmpfr4 libmpx2 libperl5.24 libpython-all-dev
  libpython-dev libpython2.7 libpython2.7-dev libquadmath0 libstdc++-6-dev
  libtsan0 libubsan0 linux-libc-dev make manpages manpages-dev netbase patch
  perl perl-modules-5.24 python-all python-all-dev python-cffi-backend
  python-crypto python-cryptography python-dbus python-dev python-enum34
  python-gi python-idna python-ipaddress python-keyring python-keyrings.alt
  python-pip-whl python-pkg-resources python-pyasn1 python-secretstorage
  python-setuptools python-wheel python-xdg python2.7-dev rename
  shared-mime-info xdg-user-dirs
Suggested packages:
  binutils-doc cpp-doc gcc-6-locales default-dbus-session-bus
  | dbus-session-bus debian-keyring g++-multilib g++-6-multilib gcc-6-doc
  libstdc++6-6-dbg gcc-multilib autoconf automake libtool flex bison gdb
  gcc-doc gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
  libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg
  libmpx2-dbg libquadmath0-dbg glibc-doc libstdc++-6-doc make-doc man-browser
  ed diffutils-doc perl-doc libterm-readline-gnu-perl
  | libterm-readline-perl-perl python-crypto-dbg python-crypto-doc
  python-cryptography-doc python-cryptography-vectors python-dbus-dbg
  python-dbus-doc python-enum34-doc python-gi-cairo gnome-keyring
  libkf5wallet-bin gir1.2-gnomekeyring-1.0 python-fs python-gdata
  python-keyczar doc-base python-secretstorage-doc python-setuptools-doc
The following NEW packages will be installed:
  binutils build-essential cpp cpp-6 dbus dpkg-dev fakeroot g++ g++-6 gcc
  gcc-6 gir1.2-glib-2.0 libalgorithm-diff-perl libalgorithm-diff-xs-perl
  libalgorithm-merge-perl libapparmor1 libasan3 libatomic1 libc-dev-bin
  libc6-dev libcc1-0 libcilkrts5 libdbus-1-3 libdbus-glib-1-2 libdpkg-perl
  libexpat1-dev libfakeroot libfile-fcntllock-perl libgcc-6-dev libgdbm3
  libgirepository-1.0-1 libglib2.0-0 libglib2.0-data libgomp1 libisl15 libitm1
  liblsan0 libmpc3 libmpfr4 libmpx2 libperl5.24 libpython-all-dev
  libpython-dev libpython2.7 libpython2.7-dev libquadmath0 libstdc++-6-dev
  libtsan0 libubsan0 linux-libc-dev make manpages manpages-dev netbase patch
  perl perl-modules-5.24 python-all python-all-dev python-cffi-backend
  python-crypto python-cryptography python-dbus python-dev python-enum34
  python-gi python-idna python-ipaddress python-keyring python-keyrings.alt
  python-pip python-pip-whl python-pkg-resources python-pyasn1
  python-secretstorage python-setuptools python-wheel python-xdg python2.7-dev
  rename shared-mime-info xdg-user-dirs
0 upgraded, 82 newly installed, 0 to remove and 2 not upgraded.
Need to get 78.4 MB of archives.
After this operation, 262 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu zesty/main amd64 perl-modules-5.24 all 5.24.1-2ubuntu1 [2663 kB]
Get:2 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgdbm3 amd64 1.8.3-14 [16.8 kB]
Get:3 http://archive.ubuntu.com/ubuntu zesty/main amd64 libperl5.24 amd64 5.24.1-2ubuntu1 [3473 kB]
Get:4 http://archive.ubuntu.com/ubuntu zesty/main amd64 perl amd64 5.24.1-2ubuntu1 [218 kB]
Get:5 http://archive.ubuntu.com/ubuntu zesty/main amd64 libmpfr4 amd64 3.1.5-1 [191 kB]
Get:6 http://archive.ubuntu.com/ubuntu zesty/main amd64 libmpc3 amd64 1.0.3-1 [39.7 kB]
Get:7 http://archive.ubuntu.com/ubuntu zesty/main amd64 libapparmor1 amd64 2.11.0-2ubuntu4 [30.8 kB]
Get:8 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdbus-1-3 amd64 1.10.10-1ubuntu2 [162 kB]
Get:9 http://archive.ubuntu.com/ubuntu zesty/main amd64 dbus amd64 1.10.10-1ubuntu2 [142 kB]
Get:10 http://archive.ubuntu.com/ubuntu zesty/main amd64 netbase all 5.4 [12.7 kB]
Get:11 http://archive.ubuntu.com/ubuntu zesty/main amd64 libglib2.0-0 amd64 2.52.0-1 [1144 kB]
Get:12 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgirepository-1.0-1 amd64 1.52.0-0ubuntu1 [80.1 kB]
Get:13 http://archive.ubuntu.com/ubuntu zesty/main amd64 gir1.2-glib-2.0 amd64 1.52.0-0ubuntu1 [130 kB]
Get:14 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdbus-glib-1-2 amd64 0.108-2 [67.1 kB]
Get:15 http://archive.ubuntu.com/ubuntu zesty/main amd64 libglib2.0-data all 2.52.0-1 [5244 B]
Get:16 http://archive.ubuntu.com/ubuntu zesty/main amd64 manpages all 4.09-2 [1170 kB]
Get:17 http://archive.ubuntu.com/ubuntu zesty/main amd64 shared-mime-info amd64 1.8-1 [420 kB]
Get:18 http://archive.ubuntu.com/ubuntu zesty/main amd64 xdg-user-dirs amd64 0.15-2ubuntu6 [61.7 kB]
Get:19 http://archive.ubuntu.com/ubuntu zesty/main amd64 binutils amd64 2.28-3ubuntu1 [2439 kB]
Get:20 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libc-dev-bin amd64 2.24-9ubuntu2.2 [68.6 kB]
Get:21 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 linux-libc-dev amd64 4.10.0-24.28 [918 kB]
Get:22 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libc6-dev amd64 2.24-9ubuntu2.2 [2276 kB]
Get:23 http://archive.ubuntu.com/ubuntu zesty/main amd64 libisl15 amd64 0.18-1 [545 kB]
Get:24 http://archive.ubuntu.com/ubuntu zesty/main amd64 cpp-6 amd64 6.3.0-12ubuntu2 [6613 kB]
Get:25 http://archive.ubuntu.com/ubuntu zesty/main amd64 cpp amd64 4:6.3.0-2ubuntu1 [27.5 kB]
Get:26 http://archive.ubuntu.com/ubuntu zesty/main amd64 libcc1-0 amd64 6.3.0-12ubuntu2 [31.1 kB]
Get:27 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgomp1 amd64 6.3.0-12ubuntu2 [74.0 kB]
Get:28 http://archive.ubuntu.com/ubuntu zesty/main amd64 libitm1 amd64 6.3.0-12ubuntu2 [28.0 kB]
Get:29 http://archive.ubuntu.com/ubuntu zesty/main amd64 libatomic1 amd64 6.3.0-12ubuntu2 [9168 B]
Get:30 http://archive.ubuntu.com/ubuntu zesty/main amd64 libasan3 amd64 6.3.0-12ubuntu2 [315 kB]
Get:31 http://archive.ubuntu.com/ubuntu zesty/main amd64 liblsan0 amd64 6.3.0-12ubuntu2 [117 kB]
Get:32 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtsan0 amd64 6.3.0-12ubuntu2 [261 kB]
Get:33 http://archive.ubuntu.com/ubuntu zesty/main amd64 libubsan0 amd64 6.3.0-12ubuntu2 [108 kB]
Get:34 http://archive.ubuntu.com/ubuntu zesty/main amd64 libcilkrts5 amd64 6.3.0-12ubuntu2 [40.8 kB]
Get:35 http://archive.ubuntu.com/ubuntu zesty/main amd64 libmpx2 amd64 6.3.0-12ubuntu2 [11.5 kB]
Get:36 http://archive.ubuntu.com/ubuntu zesty/main amd64 libquadmath0 amd64 6.3.0-12ubuntu2 [132 kB]
Get:37 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgcc-6-dev amd64 6.3.0-12ubuntu2 [2307 kB]
Get:38 http://archive.ubuntu.com/ubuntu zesty/main amd64 gcc-6 amd64 6.3.0-12ubuntu2 [7209 kB]
Get:39 http://archive.ubuntu.com/ubuntu zesty/main amd64 gcc amd64 4:6.3.0-2ubuntu1 [5188 B]
Get:40 http://archive.ubuntu.com/ubuntu zesty/main amd64 libstdc++-6-dev amd64 6.3.0-12ubuntu2 [1427 kB]
Get:41 http://archive.ubuntu.com/ubuntu zesty/main amd64 g++-6 amd64 6.3.0-12ubuntu2 [7395 kB]
Get:42 http://archive.ubuntu.com/ubuntu zesty/main amd64 g++ amd64 4:6.3.0-2ubuntu1 [1476 B]
Get:43 http://archive.ubuntu.com/ubuntu zesty/main amd64 make amd64 4.1-9.1 [154 kB]
Get:44 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdpkg-perl all 1.18.10ubuntu2 [202 kB]
Get:45 http://archive.ubuntu.com/ubuntu zesty/main amd64 patch amd64 2.7.5-1 [90.4 kB]
Get:46 http://archive.ubuntu.com/ubuntu zesty/main amd64 dpkg-dev all 1.18.10ubuntu2 [651 kB]
Get:47 http://archive.ubuntu.com/ubuntu zesty/main amd64 build-essential amd64 12.1ubuntu2 [4758 B]
Get:48 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfakeroot amd64 1.21-1ubuntu2 [25.9 kB]
Get:49 http://archive.ubuntu.com/ubuntu zesty/main amd64 fakeroot amd64 1.21-1ubuntu2 [62.2 kB]
Get:50 http://archive.ubuntu.com/ubuntu zesty/main amd64 libalgorithm-diff-perl all 1.19.03-1 [47.6 kB]
Get:51 http://archive.ubuntu.com/ubuntu zesty/main amd64 libalgorithm-diff-xs-perl amd64 0.04-4build2 [11.1 kB]
Get:52 http://archive.ubuntu.com/ubuntu zesty/main amd64 libalgorithm-merge-perl all 0.08-3 [12.0 kB]
Get:53 http://archive.ubuntu.com/ubuntu zesty/main amd64 libexpat1-dev amd64 2.2.0-2 [121 kB]
Get:54 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfile-fcntllock-perl amd64 0.22-3build1 [33.1 kB]
Get:55 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpython2.7 amd64 2.7.13-2 [1072 kB]
Get:56 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpython2.7-dev amd64 2.7.13-2 [28.2 MB]
Get:57 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpython-dev amd64 2.7.13-2 [7842 B]
Get:58 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpython-all-dev amd64 2.7.13-2 [994 B]
Get:59 http://archive.ubuntu.com/ubuntu zesty/main amd64 manpages-dev all 4.09-2 [2113 kB]
Get:60 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-all amd64 2.7.13-2 [978 B]
Get:61 http://archive.ubuntu.com/ubuntu zesty/main amd64 python2.7-dev amd64 2.7.13-2 [276 kB]
Get:62 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-dev amd64 2.7.13-2 [1160 B]
Get:63 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-all-dev amd64 2.7.13-2 [1000 B]
Get:64 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-cffi-backend amd64 1.9.1-2 [60.7 kB]
Get:65 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-crypto amd64 2.6.1-7 [244 kB]
Get:66 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-enum34 all 1.1.6-1 [34.6 kB]
Get:67 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-idna all 2.2-1 [31.2 kB]
Get:68 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-ipaddress all 1.0.17-1 [18.2 kB]
Get:69 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-pyasn1 all 0.1.9-2 [45.4 kB]
Get:70 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-pkg-resources all 33.1.1-1 [127 kB]
Get:71 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-setuptools all 33.1.1-1 [258 kB]
Get:72 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-cryptography amd64 1.7.1-2 [214 kB]
Get:73 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-dbus amd64 1.2.4-1 [85.1 kB]
Get:74 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-gi amd64 3.22.0-2 [194 kB]
Get:75 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-secretstorage all 2.3.1-2 [11.8 kB]
Get:76 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-keyring all 10.3.1-1 [29.2 kB]
Get:77 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-keyrings.alt all 2.2-1 [16.1 kB]
Get:78 http://archive.ubuntu.com/ubuntu zesty/universe amd64 python-pip-whl all 9.0.1-2 [1379 kB]
Get:79 http://archive.ubuntu.com/ubuntu zesty/universe amd64 python-pip all 9.0.1-2 [151 kB]
Get:80 http://archive.ubuntu.com/ubuntu zesty/universe amd64 python-wheel all 0.29.0-2 [48.3 kB]
Get:81 http://archive.ubuntu.com/ubuntu zesty/universe amd64 python-xdg all 0.25-4 [31.4 kB]
Get:82 http://archive.ubuntu.com/ubuntu zesty/main amd64 rename all 0.20-4 [12.0 kB]
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 ---> cc73cc618f39
Removing intermediate container c88117456f6d
Step 10/26 : RUN apt-get -y install r-base r-bioc-cummerbund samtools tophat=2.0.9-1ubuntu1 bowtie2=2.2.9-4 cufflinks=2.1.1-4
 ---> Running in 449ec713ad02
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils bzip2-doc cdbs
  debhelper dh-autoreconf dh-strip-nondeterminism dh-translations fontconfig
  fonts-font-awesome fonts-mathjax gettext gettext-base gfortran gfortran-6
  groff-base icu-devtools intltool intltool-debian javascript-common
  libarchive-zip-perl libauthen-sasl-perl libblas-common libblas-dev libblas3
  libboost-system1.54.0 libboost-thread1.54.0 libbsd0 libbz2-dev libcairo2
  libcroco3 libcurl3-gnutls libdatrie1 libdrm-amdgpu1 libdrm-intel1
  libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1
  libencode-locale-perl libfile-basedir-perl libfile-desktopentry-perl
  libfile-listing-perl libfile-mimeinfo-perl libfile-stripnondeterminism-perl
  libfont-afm-perl libfontenc1 libgfortran-6-dev libgfortran3 libgl1-mesa-dri
  libgl1-mesa-glx libglapi-mesa libgraphite2-3 libharfbuzz0b libhtml-form-perl
  libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tree-perl libhts1 libhttp-cookies-perl libhttp-daemon-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6
  libicu-dev libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl
  libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap libjs-es5-shim
  libjs-highlight.js libjs-jquery libjs-jquery-datatables
  libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json
  libjs-mathjax libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker
  liblapack-dev liblapack3 libllvm4.0 libltdl-dev libltdl7
  liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev
  libmail-sendmail-perl libmailtools-perl libncurses5-dev libnet-dbus-perl
  libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0
  libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpng-tools libreadline-dev libsensors4
  libsigsegv2 libsm6 libsys-hostname-long-perl libtbb2 libtcl8.6
  libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtimedate-perl
  libtinfo-dev libtk8.6 libtool libtxc-dxtn-s2tc liburi-perl libuv1
  libwww-perl libwww-robotrules-perl libx11-protocol-perl libx11-xcb1 libxaw7
  libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0
  libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcomposite1 libxcursor1
  libxdamage1 libxext6 libxfixes3 libxft2 libxi6 libxinerama1
  libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxmu6 libxmuu1
  libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtst6 libxv1
  libxxf86dga1 libxxf86vm1 littler m4 man-db node-highlight.js nodejs
  perl-openssl-defaults po-debconf python-scour r-base-core r-base-dev
  r-base-html r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase
  r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart
  r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-ensembldb
  r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures
  r-bioc-genomicranges r-bioc-gviz r-bioc-interactivedisplaybase
  r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
  r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
  r-cran-acepack r-cran-assertthat r-cran-backports r-cran-base64enc
  r-cran-bitops r-cran-boot r-cran-checkmate r-cran-chron r-cran-class
  r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-crayon r-cran-curl
  r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-evaluate
  r-cran-fastcluster r-cran-foreign r-cran-formula r-cran-futile.logger
  r-cran-futile.options r-cran-ggplot2 r-cran-gridextra r-cran-gtable
  r-cran-highr r-cran-hmisc r-cran-htmltable r-cran-htmltools
  r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jsonlite
  r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r
  r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler
  r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats
  r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme
  r-cran-nnet r-cran-openssl r-cran-pkgkitten r-cran-plyr r-cran-r6
  r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rpart
  r-cran-rsqlite r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools
  r-cran-spatial r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble
  r-cran-viridis r-cran-xml r-cran-xtable r-cran-yaml r-doc-html r-recommended
  x11-common x11-utils x11-xserver-utils xauth xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc bowtie2-examples wamerican
  | wordlist whois vacation devscripts dh-make gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-multilib gfortran-doc gfortran-6-multilib
  gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff libdigest-hmac-perl
  libgssapi-perl liblapack-doc-man liblapack-doc libdata-dump-perl icu-doc
  libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc
  libtool-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc pciutils
  readline-doc lm-sensors tcl8.6 tk8.6 gcj-jdk libauthen-ntlm-perl
  libunicode-map8-perl libunicode-string-perl xml-twig-tools m4-doc less
  www-browser libmail-box-perl python-rsvg python-cairo ess r-doc-info
  | r-doc-pdf r-mathlib texlive-base texlive-latex-base
  texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  mozilla | www-browser r-bioc-go.db r-cran-runit r-bioc-graph r-cran-foreach
  r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi
  r-bioc-shortread r-bioc-annotate r-bioc-affy r-cran-rjson r-bioc-deseq2
  r-bioc-edger r-bioc-genefilter r-bioc-limma r-bioc-snpstats r-cran-testthat
  r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-reshape r-cran-hexbin
  r-cran-fastmatch r-cran-xts r-cran-gdata r-cran-caret r-cran-zoo
  r-cran-rmysql r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-quantreg
  r-cran-testit r-cran-png r-cran-xml2 r-cran-formatr r-cran-rgl
  r-cran-tikzdevice r-cran-getopt r-cran-abind r-cran-iterators r-cran-inline
  r-cran-dbitest r-cran-cairo r-cran-rsprng r-cran-rlecuyer bowtie mesa-utils
  nickle cairo-5c xorg-docs-core gvfs-bin
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bowtie2 bsdmainutils bzip2-doc
  cdbs cufflinks debhelper dh-autoreconf dh-strip-nondeterminism
  dh-translations fontconfig fonts-font-awesome fonts-mathjax gettext
  gettext-base gfortran gfortran-6 groff-base icu-devtools intltool
  intltool-debian javascript-common libarchive-zip-perl libauthen-sasl-perl
  libblas-common libblas-dev libblas3 libboost-system1.54.0
  libboost-thread1.54.0 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3-gnutls
  libdatrie1 libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 libdrm-radeon1
  libdrm2 libedit2 libelf1 libencode-locale-perl libfile-basedir-perl
  libfile-desktopentry-perl libfile-listing-perl libfile-mimeinfo-perl
  libfile-stripnondeterminism-perl libfont-afm-perl libfontenc1
  libgfortran-6-dev libgfortran3 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa
  libgraphite2-3 libharfbuzz0b libhtml-form-perl libhtml-format-perl
  libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts1
  libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
  libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev
  libio-html-perl libio-socket-ssl-perl libipc-system-simple-perl libjpeg-dev
  libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap libjs-es5-shim
  libjs-highlight.js libjs-jquery libjs-jquery-datatables
  libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui libjs-json
  libjs-mathjax libjs-twitter-bootstrap libjs-twitter-bootstrap-datepicker
  liblapack-dev liblapack3 libllvm4.0 libltdl-dev libltdl7
  liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev
  libmail-sendmail-perl libmailtools-perl libncurses5-dev libnet-dbus-perl
  libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0
  libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpng-tools libreadline-dev libsensors4
  libsigsegv2 libsm6 libsys-hostname-long-perl libtbb2 libtcl8.6
  libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtimedate-perl
  libtinfo-dev libtk8.6 libtool libtxc-dxtn-s2tc liburi-perl libuv1
  libwww-perl libwww-robotrules-perl libx11-protocol-perl libx11-xcb1 libxaw7
  libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0
  libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcomposite1 libxcursor1
  libxdamage1 libxext6 libxfixes3 libxft2 libxi6 libxinerama1
  libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxmu6 libxmuu1
  libxrandr2 libxrender1 libxshmfence1 libxss1 libxt6 libxtst6 libxv1
  libxxf86dga1 libxxf86vm1 littler m4 man-db node-highlight.js nodejs
  perl-openssl-defaults po-debconf python-scour r-base r-base-core r-base-dev
  r-base-html r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase
  r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart
  r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund
  r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomicalignments
  r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz
  r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-rsamtools
  r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment
  r-bioc-variantannotation r-bioc-xvector r-cran-acepack r-cran-assertthat
  r-cran-backports r-cran-base64enc r-cran-bitops r-cran-boot r-cran-checkmate
  r-cran-chron r-cran-class r-cran-cluster r-cran-codetools r-cran-colorspace
  r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dichromat
  r-cran-digest r-cran-evaluate r-cran-fastcluster r-cran-foreign
  r-cran-formula r-cran-futile.logger r-cran-futile.options r-cran-ggplot2
  r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-htmltable
  r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr
  r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lazyeval
  r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
  r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pkgkitten r-cran-plyr
  r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2
  r-cran-rpart r-cran-rsqlite r-cran-scales r-cran-shiny r-cran-snow
  r-cran-sourcetools r-cran-spatial r-cran-stringi r-cran-stringr
  r-cran-survival r-cran-tibble r-cran-viridis r-cran-xml r-cran-xtable
  r-cran-yaml r-doc-html r-recommended samtools tophat x11-common x11-utils
  x11-xserver-utils xauth xdg-utils zip zlib1g-dev
0 upgraded, 298 newly installed, 0 to remove and 2 not upgraded.
Need to get 209 MB of archives.
After this operation, 671 MB of additional disk space will be used.
Get:1 http://mirrors.kernel.org/ubuntu trusty/main amd64 libboost-system1.54.0 amd64 1.54.0-4ubuntu3 [10.1 kB]
Get:2 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB]
Get:3 http://mirrors.kernel.org/ubuntu trusty/main amd64 libboost-thread1.54.0 amd64 1.54.0-4ubuntu3 [26.5 kB]
Get:4 http://archive.ubuntu.com/ubuntu zesty/main amd64 groff-base amd64 1.22.3-9 [1144 kB]
Get:5 http://mirrors.kernel.org/ubuntu trusty/multiverse amd64 cufflinks amd64 2.1.1-4 [950 kB]
Get:6 http://mirrors.kernel.org/ubuntu yakkety/universe amd64 bowtie2 amd64 2.2.9-4 [1191 kB]
Get:7 http://mirrors.kernel.org/ubuntu trusty/universe amd64 tophat amd64 2.0.9-1ubuntu1 [614 kB]
Get:8 http://archive.ubuntu.com/ubuntu zesty/main amd64 libbsd0 amd64 0.8.3-1 [41.4 kB]
Get:9 http://archive.ubuntu.com/ubuntu zesty/main amd64 bsdmainutils amd64 9.0.12ubuntu1 [177 kB]
Get:10 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB]
Get:11 http://archive.ubuntu.com/ubuntu zesty/main amd64 man-db amd64 2.7.6.1-2 [895 kB]
Get:12 http://archive.ubuntu.com/ubuntu zesty/main amd64 fontconfig amd64 2.11.94-0ubuntu2 [177 kB]
Get:13 http://archive.ubuntu.com/ubuntu zesty/main amd64 x11-common all 1:7.7+16ubuntu3 [21.8 kB]
Get:14 http://archive.ubuntu.com/ubuntu zesty/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB]
Get:15 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpcrecpp0v5 amd64 2:8.39-3 [15.0 kB]
Get:16 http://archive.ubuntu.com/ubuntu zesty/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB]
Get:17 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxfixes3 amd64 1:5.0.3-1 [10.8 kB]
Get:18 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB]
Get:19 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcursor1 amd64 1:1.1.14-1 [22.8 kB]
Get:20 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxdamage1 amd64 1:1.1.4-2 [6946 B]
Get:21 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB]
Get:22 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxinerama1 amd64 2:1.1.3-1 [7908 B]
Get:23 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxshmfence1 amd64 1.2-1 [5042 B]
Get:24 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B]
Get:25 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxxf86dga1 amd64 2:1.1.4-1 [13.7 kB]
Get:26 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxxf86vm1 amd64 1:1.1.4-1 [10.6 kB]
Get:27 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libtbb2 amd64 4.4~20160526-0ubuntu2 [111 kB]
Get:28 http://archive.ubuntu.com/ubuntu zesty/main amd64 libjs-jquery all 3.1.1-2 [151 kB]
Get:29 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-jquery-metadata all 11-3 [6958 B]
Get:30 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-jquery-tablesorter all 11-3 [41.6 kB]
Get:31 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-twitter-bootstrap all 2.0.2+dfsg-10 [98.4 kB]
Get:32 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-1 [27.9 kB]
Get:33 http://archive.ubuntu.com/ubuntu zesty/main amd64 libelf1 amd64 0.166-2ubuntu1 [42.9 kB]
Get:34 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtext-iconv-perl amd64 1.7-5build5 [12.9 kB]
Get:35 http://archive.ubuntu.com/ubuntu zesty/main amd64 gettext-base amd64 0.19.8.1-1ubuntu2 [48.7 kB]
Get:36 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libcurl3-gnutls amd64 7.52.1-4ubuntu1.1 [192 kB]
Get:37 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdrm2 amd64 2.4.76-1 [30.3 kB]
Get:38 http://archive.ubuntu.com/ubuntu zesty/main amd64 libedit2 amd64 3.1-20160903-3 [76.7 kB]
Get:39 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B]
Get:40 http://archive.ubuntu.com/ubuntu zesty/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB]
Get:41 http://archive.ubuntu.com/ubuntu zesty/main amd64 libsigsegv2 amd64 2.10-5 [14.1 kB]
Get:42 http://archive.ubuntu.com/ubuntu zesty/main amd64 m4 amd64 1.4.18-1 [197 kB]
Get:43 http://archive.ubuntu.com/ubuntu zesty/main amd64 autoconf all 2.69-10 [321 kB]
Get:44 http://archive.ubuntu.com/ubuntu zesty/main amd64 autotools-dev all 20161112.1 [39.5 kB]
Get:45 http://archive.ubuntu.com/ubuntu zesty/main amd64 automake all 1:1.15-5ubuntu1 [509 kB]
Get:46 http://archive.ubuntu.com/ubuntu zesty/main amd64 autopoint all 0.19.8.1-1ubuntu2 [412 kB]
Get:47 http://archive.ubuntu.com/ubuntu zesty/main amd64 bzip2-doc all 1.0.6-8.1 [294 kB]
Get:48 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtool all 2.4.6-2 [194 kB]
Get:49 http://archive.ubuntu.com/ubuntu zesty/main amd64 dh-autoreconf all 13 [15.6 kB]
Get:50 http://archive.ubuntu.com/ubuntu zesty/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB]
Get:51 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfile-stripnondeterminism-perl all 0.032-1 [12.9 kB]
Get:52 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB]
Get:53 http://archive.ubuntu.com/ubuntu zesty/main amd64 dh-strip-nondeterminism all 0.032-1 [4894 B]
Get:54 http://archive.ubuntu.com/ubuntu zesty/main amd64 libcroco3 amd64 0.6.11-2 [81.1 kB]
Get:55 http://archive.ubuntu.com/ubuntu zesty/main amd64 gettext amd64 0.19.8.1-1ubuntu2 [1083 kB]
Get:56 http://archive.ubuntu.com/ubuntu zesty/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB]
Get:57 http://archive.ubuntu.com/ubuntu zesty/main amd64 po-debconf all 1.0.20 [232 kB]
Get:58 http://archive.ubuntu.com/ubuntu zesty/main amd64 debhelper all 10.2.2ubuntu1 [742 kB]
Get:59 http://archive.ubuntu.com/ubuntu zesty/main amd64 liburi-perl all 1.71-1 [76.9 kB]
Get:60 http://archive.ubuntu.com/ubuntu zesty/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB]
Get:61 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB]
Get:62 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfile-listing-perl all 6.04-1 [9774 B]
Get:63 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhtml-tagset-perl all 3.20-3 [12.1 kB]
Get:64 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhtml-parser-perl amd64 3.72-3 [85.4 kB]
Get:65 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhtml-tree-perl all 5.03-2 [197 kB]
Get:66 http://archive.ubuntu.com/ubuntu zesty/main amd64 libio-html-perl all 1.001-1 [14.9 kB]
Get:67 http://archive.ubuntu.com/ubuntu zesty/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB]
Get:68 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB]
Get:69 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB]
Get:70 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB]
Get:71 http://archive.ubuntu.com/ubuntu zesty/main amd64 perl-openssl-defaults amd64 3 [6818 B]
Get:72 http://archive.ubuntu.com/ubuntu zesty/main amd64 libnet-ssleay-perl amd64 1.80-1 [264 kB]
Get:73 http://archive.ubuntu.com/ubuntu zesty/main amd64 libio-socket-ssl-perl all 2.044-1 [163 kB]
Get:74 http://archive.ubuntu.com/ubuntu zesty/main amd64 libnet-http-perl all 6.12-1 [22.5 kB]
Get:75 http://archive.ubuntu.com/ubuntu zesty/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B]
Get:76 http://archive.ubuntu.com/ubuntu zesty/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB]
Get:77 http://archive.ubuntu.com/ubuntu zesty/main amd64 libwww-perl all 6.15-1 [146 kB]
Get:78 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxml-parser-perl amd64 2.44-2build2 [199 kB]
Get:79 http://archive.ubuntu.com/ubuntu zesty/main amd64 intltool all 0.51.0-3 [44.4 kB]
Get:80 http://archive.ubuntu.com/ubuntu zesty/main amd64 dh-translations all 131 [22.3 kB]
Get:81 http://archive.ubuntu.com/ubuntu zesty/main amd64 python-scour all 0.32-2 [42.8 kB]
Get:82 http://archive.ubuntu.com/ubuntu zesty/main amd64 cdbs all 0.4.150ubuntu1 [46.1 kB]
Get:83 http://archive.ubuntu.com/ubuntu zesty/main amd64 fonts-font-awesome all 4.7.0~dfsg-1 [513 kB]
Get:84 http://archive.ubuntu.com/ubuntu zesty/universe amd64 fonts-mathjax all 2.7.0-2ubuntu1 [959 kB]
Get:85 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgfortran3 amd64 6.3.0-12ubuntu2 [270 kB]
Get:86 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgfortran-6-dev amd64 6.3.0-12ubuntu2 [303 kB]
Get:87 http://archive.ubuntu.com/ubuntu zesty/main amd64 gfortran-6 amd64 6.3.0-12ubuntu2 [6954 kB]
Get:88 http://archive.ubuntu.com/ubuntu zesty/main amd64 gfortran amd64 4:6.3.0-2ubuntu1 [1272 B]
Get:89 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 icu-devtools amd64 57.1-5ubuntu0.1 [167 kB]
Get:90 http://archive.ubuntu.com/ubuntu zesty/main amd64 javascript-common all 11 [6066 B]
Get:91 http://archive.ubuntu.com/ubuntu zesty/main amd64 libblas-common amd64 3.7.0-1 [5696 B]
Get:92 http://archive.ubuntu.com/ubuntu zesty/main amd64 libblas3 amd64 3.7.0-1 [144 kB]
Get:93 http://archive.ubuntu.com/ubuntu zesty/main amd64 libblas-dev amd64 3.7.0-1 [7668 B]
Get:94 http://archive.ubuntu.com/ubuntu zesty/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.5 kB]
Get:95 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpixman-1-0 amd64 0.34.0-1 [230 kB]
Get:96 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB]
Get:97 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B]
Get:98 http://archive.ubuntu.com/ubuntu zesty/main amd64 libcairo2 amd64 1.14.8-1 [556 kB]
Get:99 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdatrie1 amd64 0.2.10-4 [17.3 kB]
Get:100 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdrm-amdgpu1 amd64 2.4.76-1 [17.6 kB]
Get:101 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpciaccess0 amd64 0.13.4-1ubuntu1 [17.9 kB]
Get:102 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdrm-intel1 amd64 2.4.76-1 [60.2 kB]
Get:103 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdrm-nouveau2 amd64 2.4.76-1 [16.2 kB]
Get:104 http://archive.ubuntu.com/ubuntu zesty/main amd64 libdrm-radeon1 amd64 2.4.76-1 [21.4 kB]
Get:105 http://archive.ubuntu.com/ubuntu zesty/main amd64 libipc-system-simple-perl all 1.25-3 [22.8 kB]
Get:106 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfile-basedir-perl all 0.07-1 [16.9 kB]
Get:107 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfile-desktopentry-perl all 0.22-1 [18.2 kB]
Get:108 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfile-mimeinfo-perl all 0.27-1 [45.9 kB]
Get:109 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfont-afm-perl all 1.20-2 [13.2 kB]
Get:110 http://archive.ubuntu.com/ubuntu zesty/main amd64 libfontenc1 amd64 1:1.1.3-1 [13.9 kB]
Get:111 http://archive.ubuntu.com/ubuntu zesty/main amd64 libllvm4.0 amd64 1:4.0-1ubuntu1 [12.2 MB]
Get:112 http://archive.ubuntu.com/ubuntu zesty/main amd64 libsensors4 amd64 1:3.4.0-4 [28.8 kB]
Get:113 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgl1-mesa-dri amd64 17.0.3-1ubuntu1 [4590 kB]
Get:114 http://archive.ubuntu.com/ubuntu zesty/main amd64 libglapi-mesa amd64 17.0.3-1ubuntu1 [23.1 kB]
Get:115 http://archive.ubuntu.com/ubuntu zesty/main amd64 libx11-xcb1 amd64 2:1.6.4-3 [9626 B]
Get:116 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcb-dri2-0 amd64 1.11.1-1ubuntu1 [6882 B]
Get:117 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcb-dri3-0 amd64 1.11.1-1ubuntu1 [5218 B]
Get:118 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcb-glx0 amd64 1.11.1-1ubuntu1 [20.9 kB]
Get:119 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcb-present0 amd64 1.11.1-1ubuntu1 [5218 B]
Get:120 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcb-sync1 amd64 1.11.1-1ubuntu1 [8324 B]
Get:121 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgl1-mesa-glx amd64 17.0.3-1ubuntu1 [129 kB]
Get:122 http://archive.ubuntu.com/ubuntu zesty/main amd64 libgraphite2-3 amd64 1.3.9-3 [71.3 kB]
Get:123 http://archive.ubuntu.com/ubuntu zesty/main amd64 libharfbuzz0b amd64 1.4.2-1 [211 kB]
Get:124 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhtml-form-perl all 6.03-1 [23.5 kB]
Get:125 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhtml-format-perl all 2.12-1 [41.3 kB]
Get:126 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libhts1 amd64 1.3.2-2ubuntu1 [252 kB]
Get:127 http://archive.ubuntu.com/ubuntu zesty/main amd64 libhttp-daemon-perl all 6.01-1 [17.0 kB]
Get:128 http://archive.ubuntu.com/ubuntu zesty-updates/main amd64 libicu-dev amd64 57.1-5ubuntu0.1 [16.5 MB]
Get:129 http://archive.ubuntu.com/ubuntu zesty/main amd64 libjpeg-turbo8-dev amd64 1.5.1-0ubuntu1 [260 kB]
Get:130 http://archive.ubuntu.com/ubuntu zesty/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B]
Get:131 http://archive.ubuntu.com/ubuntu zesty/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B]
Get:132 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-bootstrap all 3.3.7+dfsg-2 [228 kB]
Get:133 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-es5-shim all 4.5.9-1 [34.8 kB]
Get:134 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-highlight.js all 8.2+ds-5 [150 kB]
Get:135 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-jquery-datatables all 1.10.13+dfsg-2 [135 kB]
Get:136 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-4 [232 kB]
Get:137 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-json all 0~20160510-1 [21.1 kB]
Get:138 http://archive.ubuntu.com/ubuntu zesty/main amd64 liblapack3 amd64 3.7.0-1 [2129 kB]
Get:139 http://archive.ubuntu.com/ubuntu zesty/main amd64 liblapack-dev amd64 3.7.0-1 [2158 kB]
Get:140 http://archive.ubuntu.com/ubuntu zesty/main amd64 libltdl7 amd64 2.4.6-2 [38.8 kB]
Get:141 http://archive.ubuntu.com/ubuntu zesty/main amd64 libltdl-dev amd64 2.4.6-2 [162 kB]
Get:142 http://archive.ubuntu.com/ubuntu zesty/main amd64 libsys-hostname-long-perl all 1.5-1 [11.7 kB]
Get:143 http://archive.ubuntu.com/ubuntu zesty/main amd64 libmail-sendmail-perl all 0.79.16-2 [22.3 kB]
Get:144 http://archive.ubuntu.com/ubuntu zesty/main amd64 libnet-smtp-ssl-perl all 1.04-1 [5948 B]
Get:145 http://archive.ubuntu.com/ubuntu zesty/main amd64 libmailtools-perl all 2.18-1 [74.0 kB]
Get:146 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtinfo-dev amd64 6.0+20160625-1ubuntu1 [78.9 kB]
Get:147 http://archive.ubuntu.com/ubuntu zesty/main amd64 libncurses5-dev amd64 6.0+20160625-1ubuntu1 [176 kB]
Get:148 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxml-twig-perl all 1:3.50-1 [156 kB]
Get:149 http://archive.ubuntu.com/ubuntu zesty/main amd64 libnet-dbus-perl amd64 1.1.0-4build1 [175 kB]
Get:150 http://archive.ubuntu.com/ubuntu zesty/main amd64 libthai-data all 0.1.26-1 [131 kB]
Get:151 http://archive.ubuntu.com/ubuntu zesty/main amd64 libthai0 amd64 0.1.26-1 [17.3 kB]
Get:152 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpango-1.0-0 amd64 1.40.4-1 [148 kB]
Get:153 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpangoft2-1.0-0 amd64 1.40.4-1 [32.2 kB]
Get:154 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpangocairo-1.0-0 amd64 1.40.4-1 [19.8 kB]
Get:155 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB]
Get:156 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B]
Get:157 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpcre16-3 amd64 2:8.39-3 [149 kB]
Get:158 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpcre32-3 amd64 2:8.39-3 [139 kB]
Get:159 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpcre3-dev amd64 2:8.39-3 [537 kB]
Get:160 http://archive.ubuntu.com/ubuntu zesty/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu1 [173 kB]
Get:161 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpng-dev amd64 1.6.28-1 [143 kB]
Get:162 http://archive.ubuntu.com/ubuntu zesty/main amd64 libpng-tools amd64 1.6.28-1 [24.8 kB]
Get:163 http://archive.ubuntu.com/ubuntu zesty/main amd64 libreadline-dev amd64 7.0-0ubuntu2 [132 kB]
Get:164 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtcl8.6 amd64 8.6.6+dfsg-1 [878 kB]
Get:165 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtie-ixhash-perl all 1.23-2 [11.2 kB]
Get:166 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtk8.6 amd64 8.6.6-1 [693 kB]
Get:167 http://archive.ubuntu.com/ubuntu zesty/main amd64 libuv1 amd64 1.9.1-3 [58.6 kB]
Get:168 http://archive.ubuntu.com/ubuntu zesty/main amd64 libx11-protocol-perl all 0.56-7 [149 kB]
Get:169 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB]
Get:170 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxmu6 amd64 2:1.1.2-2 [46.0 kB]
Get:171 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxaw7 amd64 2:1.0.13-1 [173 kB]
Get:172 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcb-shape0 amd64 1.11.1-1ubuntu1 [5756 B]
Get:173 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxcomposite1 amd64 1:0.4.4-2 [6988 B]
Get:174 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxi6 amd64 2:1.7.9-1 [29.2 kB]
Get:175 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxml-xpathengine-perl all 0.13-1 [37.1 kB]
Get:176 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxrandr2 amd64 2:1.5.1-1 [18.1 kB]
Get:177 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxtst6 amd64 2:1.2.3-1 [12.8 kB]
Get:178 http://archive.ubuntu.com/ubuntu zesty/main amd64 libxv1 amd64 2:1.0.11-1 [10.7 kB]
Get:179 http://archive.ubuntu.com/ubuntu zesty/main amd64 zip amd64 3.0-11 [158 kB]
Get:180 http://archive.ubuntu.com/ubuntu zesty/main amd64 xdg-utils all 1.1.1-1ubuntu2 [59.6 kB]
Get:181 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-base-core amd64 3.3.2-1 [21.0 MB]
Get:182 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-littler amd64 0.3.2-1 [53.9 kB]
Get:183 http://archive.ubuntu.com/ubuntu zesty/universe amd64 littler all 0.3.2-1 [2740 B]
Get:184 http://archive.ubuntu.com/ubuntu zesty/universe amd64 nodejs amd64 4.7.2~dfsg-1ubuntu3 [3326 kB]
Get:185 http://archive.ubuntu.com/ubuntu zesty/universe amd64 node-highlight.js all 8.2+ds-5 [106 kB]
Get:186 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-boot all 1.3-18-2 [571 kB]
Get:187 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-cluster amd64 2.0.5-1 [473 kB]
Get:188 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-foreign amd64 0.8.67-1 [197 kB]
Get:189 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-mass amd64 7.3-45-1 [1018 kB]
Get:190 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-kernsmooth amd64 2.23-15-2 [80.6 kB]
Get:191 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-lattice amd64 0.20-34-1 [702 kB]
Get:192 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-nlme amd64 3.1.131-2 [2015 kB]
Get:193 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-matrix amd64 1.2-8-1 [2281 kB]
Get:194 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-mgcv amd64 1.8-16-1 [2060 kB]
Get:195 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-survival amd64 2.40-1-1 [4862 kB]
Get:196 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-rpart amd64 4.1-10-2 [855 kB]
Get:197 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-class amd64 7.3-14-1 [81.1 kB]
Get:198 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-nnet amd64 7.3-12-1 [96.8 kB]
Get:199 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-spatial amd64 7.3-11-1 [118 kB]
Get:200 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-codetools all 0.2-15-1 [45.5 kB]
Get:201 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-recommended all 3.3.2-1 [2742 B]
Get:202 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-base all 3.3.2-1 [9202 B]
Get:203 http://archive.ubuntu.com/ubuntu zesty/main amd64 liblzma-dev amd64 5.2.2-1.2 [145 kB]
Get:204 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-base-dev all 3.3.2-1 [4340 B]
Get:205 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-biocgenerics all 0.20.0-1 [484 kB]
Get:206 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-biobase amd64 2.34.0-1 [1991 kB]
Get:207 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-s4vectors amd64 0.12.1-2 [1113 kB]
Get:208 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-iranges amd64 2.8.1-1 [1435 kB]
Get:209 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-dbi amd64 0.5-1-1 [333 kB]
Get:210 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-digest amd64 0.6.12-1 [107 kB]
Get:211 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-memoise all 1.0.0-1 [24.6 kB]
Get:212 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-pkgkitten all 0.1.4-1 [17.9 kB]
Get:213 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-rcpp amd64 0.12.9-1 [2094 kB]
Get:214 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-rsqlite amd64 1.1-2-1 [745 kB]
Get:215 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-annotationdbi all 1.36.1-2 [4193 kB]
Get:216 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-biocinstaller all 1.24.0-1 [59.4 kB]
Get:217 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-httpuv amd64 1.3.3-3 [225 kB]
Get:218 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-mime amd64 0.5-1 [25.6 kB]
Get:219 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-jsonlite amd64 1.2-1 [588 kB]
Get:220 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-xtable all 1:1.8-2-1 [694 kB]
Get:221 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-htmltools amd64 0.3.5-2 [116 kB]
Get:222 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-r6 all 2.2.0-2 [128 kB]
Get:223 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-sourcetools amd64 0.1.5-1 [43.1 kB]
Get:224 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-shiny all 1.0.0+dfsg-1 [1026 kB]
Get:225 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-interactivedisplaybase all 1.12.0-1 [33.4 kB]
Get:226 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-curl amd64 2.3-1ubuntu2 [353 kB]
Get:227 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-openssl amd64 0.9.6-1 [553 kB]
Get:228 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-httr all 1.2.1-1 [262 kB]
Get:229 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-yaml amd64 2.1.14-1 [77.6 kB]
Get:230 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-annotationhub all 2.6.4-1 [388 kB]
Get:231 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-lambda.r all 1.1.9-1 [66.8 kB]
Get:232 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-futile.options all 1.0.0-2 [15.4 kB]
Get:233 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-futile.logger all 1.4.3-1 [90.4 kB]
Get:234 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-snow all 1:0.4.2-1 [64.1 kB]
Get:235 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-biocparallel all 1.8.1-1 [633 kB]
Get:236 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-xml amd64 3.98-1.5-1 [1634 kB]
Get:237 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-bitops amd64 1.0-6-1 [23.4 kB]
Get:238 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-rcurl amd64 1.95-4.8-2 [607 kB]
Get:239 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-biomart all 2.30.0-1 [184 kB]
Get:240 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-xvector amd64 0.14.0-1 [338 kB]
Get:241 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-biostrings amd64 2.42.1-1 [13.5 MB]
Get:242 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-rcolorbrewer all 1.1-2-1 [26.1 kB]
Get:243 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-dichromat all 2.0.0-3 [146 kB]
Get:244 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-plyr amd64 1.8.4-1 [730 kB]
Get:245 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-colorspace amd64 1.3-2-1 [388 kB]
Get:246 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-munsell all 0.4.3-1 [128 kB]
Get:247 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-labeling all 0.3-1 [40.0 kB]
Get:248 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-scales amd64 0.4.1-1 [200 kB]
Get:249 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-chron amd64 2.3-49-1 [97.7 kB]
Get:250 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-formula all 1.2-1-1 [162 kB]
Get:251 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-latticeextra amd64 0.6-28-2 [2058 kB]
Get:252 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-acepack amd64 1.4.1-1 [52.4 kB]
Get:253 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-gtable all 0.2.0-1 [65.2 kB]
Get:254 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-stringi amd64 1.1.2-1 [607 kB]
Get:255 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-magrittr amd64 1.5-3build1 [146 kB]
Get:256 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-stringr all 1.1.0-1 [116 kB]
Get:257 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-reshape2 amd64 1.4.2-1 [88.2 kB]
Get:258 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-assertthat all 0.1-1 [43.9 kB]
Get:259 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-lazyeval amd64 0.2.0-1 [112 kB]
Get:260 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-tibble amd64 1.2-1 [121 kB]
Get:261 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-ggplot2 all 2.2.1-2 [2657 kB]
Get:262 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-gridextra all 2.2.1-1 [451 kB]
Get:263 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-data.table amd64 1.10.0-1 [1070 kB]
Get:264 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-evaluate all 0.10-1 [51.9 kB]
Get:265 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-highr all 0.6-1 [30.2 kB]
Get:266 http://archive.ubuntu.com/ubuntu zesty/universe amd64 libjs-mathjax all 2.7.0-2ubuntu1 [5552 kB]
Get:267 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-markdown amd64 0.7.7-1 [95.3 kB]
Get:268 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-knitr amd64 1.15.1-2 [785 kB]
Get:269 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-viridis all 0.3.4-1 [1703 kB]
Get:270 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-backports all 1.0.5-1 [29.1 kB]
Get:271 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-checkmate amd64 1.8.2-1 [458 kB]
Get:272 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-htmlwidgets amd64 0.8-1 [382 kB]
Get:273 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-htmltable all 1.9-1 [200 kB]
Get:274 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-base64enc amd64 0.1-3-1 [23.1 kB]
Get:275 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-hmisc amd64 4.0-2-1 [1739 kB]
Get:276 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-genomeinfodb all 1.10.3-1 [14.7 MB]
Get:277 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-genomicranges amd64 1.26.2-1 [1473 kB]
Get:278 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-summarizedexperiment all 1.4.0-2 [1355 kB]
Get:279 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-rsamtools amd64 1.26.1-2 [3236 kB]
Get:280 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-genomicalignments amd64 1.10.0-1 [1482 kB]
Get:281 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-rtracklayer amd64 1.34.1-1 [1828 kB]
Get:282 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-genomicfeatures all 1.26.2-1 [1054 kB]
Get:283 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-bsgenome all 1.42.0-2 [6453 kB]
Get:284 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-variantannotation amd64 1.20.2-1 [2232 kB]
Get:285 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-ensembldb all 1.6.2-1 [1254 kB]
Get:286 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-biovizbase amd64 1.22.0-2 [2538 kB]
Get:287 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-fastcluster amd64 1.1.22-1 [179 kB]
Get:288 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-matrixstats amd64 0.51.0-1 [570 kB]
Get:289 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-gviz all 1.18.1-1 [4296 kB]
Get:290 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-bioc-cummerbund all 2.16.0-2 [2133 kB]
Get:291 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-cran-crayon amd64 1.3.2-1 [454 kB]
Get:292 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-doc-html all 3.3.2-1 [517 kB]
Get:293 http://archive.ubuntu.com/ubuntu zesty/universe amd64 samtools amd64 1.3.1-3 [252 kB]
Get:294 http://archive.ubuntu.com/ubuntu zesty/main amd64 x11-utils amd64 7.7+3 [189 kB]
Get:295 http://archive.ubuntu.com/ubuntu zesty/main amd64 x11-xserver-utils amd64 7.7+7 [155 kB]
Get:296 http://archive.ubuntu.com/ubuntu zesty/main amd64 libauthen-sasl-perl all 2.1600-1 [48.7 kB]
Get:297 http://archive.ubuntu.com/ubuntu zesty/main amd64 libtxc-dxtn-s2tc amd64 1.0+git20151227-2 [48.4 kB]
Get:298 http://archive.ubuntu.com/ubuntu zesty/universe amd64 r-base-html all 3.3.2-1 [54.4 kB]
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Setting up r-cran-gridextra (2.2.1-1) ...
Setting up r-cran-stringi (1.1.2-1) ...
Setting up r-base-html (3.3.2-1) ...
Setting up r-cran-spatial (7.3-11-1) ...
Setting up r-cran-pkgkitten (0.1.4-1) ...
Setting up r-cran-futile.options (1.0.0-2) ...
Setting up r-cran-rcpp (0.12.9-1) ...
Setting up r-cran-labeling (0.3-1) ...
Setting up r-cran-r6 (2.2.0-2) ...
Setting up x11-xserver-utils (7.7+7) ...
Setting up r-cran-colorspace (1.3-2-1) ...
Setting up r-cran-mass (7.3-45-1) ...
Setting up r-cran-plyr (1.8.4-1) ...
Setting up r-cran-rcurl (1.95-4.8-2) ...
Setting up r-cran-mime (0.5-1) ...
Setting up r-cran-yaml (2.1.14-1) ...
Setting up r-cran-digest (0.6.12-1) ...
Setting up r-cran-xtable (1:1.8-2-1) ...
Setting up r-cran-magrittr (1.5-3build1) ...
Setting up r-cran-cluster (2.0.5-1) ...
Setting up r-cran-data.table (1.10.0-1) ...
Setting up r-cran-dichromat (2.0.0-3) ...
Setting up r-cran-lambda.r (1.1.9-1) ...
Setting up r-cran-matrixstats (0.51.0-1) ...
Setting up r-cran-snow (1:0.4.2-1) ...
Setting up r-cran-memoise (1.0.0-1) ...
Setting up r-bioc-s4vectors (0.12.1-2) ...
Setting up r-cran-boot (1.3-18-2) ...
Setting up r-cran-xml (3.98-1.5-1) ...
Setting up r-cran-httpuv (1.3.3-3) ...
Setting up r-cran-openssl (0.9.6-1) ...
Setting up r-cran-highr (0.6-1) ...
Setting up r-cran-codetools (0.2-15-1) ...
Setting up r-cran-chron (2.3-49-1) ...
Setting up r-cran-formula (1.2-1-1) ...
Setting up r-cran-lattice (0.20-34-1) ...
Setting up r-cran-base64enc (0.1-3-1) ...
Setting up r-cran-lazyeval (0.2.0-1) ...
Setting up r-cran-latticeextra (0.6-28-2) ...
Setting up r-cran-nlme (3.1.131-2) ...
Setting up r-cran-backports (1.0.5-1) ...
Setting up r-cran-foreign (0.8.67-1) ...
Setting up r-cran-stringr (1.1.0-1) ...
Setting up r-cran-class (7.3-14-1) ...
Setting up r-cran-kernsmooth (2.23-15-2) ...
Setting up r-cran-htmltools (0.3.5-2) ...
Setting up r-cran-markdown (0.7.7-1) ...
Setting up r-cran-evaluate (0.10-1) ...
Setting up r-cran-munsell (0.4.3-1) ...
Setting up r-cran-htmlwidgets (0.8-1) ...
Setting up r-cran-shiny (1.0.0+dfsg-1) ...
Setting up r-cran-futile.logger (1.4.3-1) ...
Setting up r-cran-reshape2 (1.4.2-1) ...
Setting up r-cran-rsqlite (1.1-2-1) ...
Setting up r-cran-httr (1.2.1-1) ...
Setting up r-bioc-iranges (2.8.1-1) ...
Setting up r-cran-scales (0.4.1-1) ...
Setting up r-cran-tibble (1.2-1) ...
Setting up r-bioc-biocparallel (1.8.1-1) ...
Setting up r-cran-matrix (1.2-8-1) ...
Setting up r-bioc-genomeinfodb (1.10.3-1) ...
Setting up r-cran-checkmate (1.8.2-1) ...
Setting up r-cran-knitr (1.15.1-2) ...
Setting up r-bioc-xvector (0.14.0-1) ...
Setting up r-cran-viridis (0.3.4-1) ...
Setting up r-bioc-interactivedisplaybase (1.12.0-1) ...
Setting up r-cran-mgcv (1.8-16-1) ...
Setting up r-bioc-biostrings (2.42.1-1) ...
Setting up r-bioc-annotationdbi (1.36.1-2) ...
Setting up r-cran-ggplot2 (2.2.1-2) ...
Setting up r-cran-survival (2.40-1-1) ...
Setting up r-bioc-genomicranges (1.26.2-1) ...
Setting up r-cran-htmltable (1.9-1) ...
Setting up r-bioc-summarizedexperiment (1.4.0-2) ...
Setting up r-bioc-biomart (2.30.0-1) ...
Setting up r-cran-rpart (4.1-10-2) ...
Setting up r-bioc-annotationhub (2.6.4-1) ...
Setting up r-bioc-rsamtools (1.26.1-2) ...
Setting up r-bioc-genomicalignments (1.10.0-1) ...
Setting up r-cran-hmisc (4.0-2-1) ...
Setting up r-recommended (3.3.2-1) ...
Setting up r-bioc-rtracklayer (1.34.1-1) ...
Setting up r-base (3.3.2-1) ...
Setting up r-bioc-genomicfeatures (1.26.2-1) ...
Setting up r-bioc-bsgenome (1.42.0-2) ...
Setting up r-bioc-ensembldb (1.6.2-1) ...
Setting up r-bioc-variantannotation (1.20.2-1) ...
Setting up r-bioc-biovizbase (1.22.0-2) ...
Setting up r-bioc-gviz (1.18.1-1) ...
Setting up r-bioc-cummerbund (2.16.0-2) ...
Setting up dh-autoreconf (13) ...
Setting up liblwp-protocol-https-perl (6.06-2) ...
Setting up dh-strip-nondeterminism (0.032-1) ...
Setting up libwww-perl (6.15-1) ...
Setting up debhelper (10.2.2ubuntu1) ...
Setting up libxml-parser-perl (2.44-2build2) ...
Setting up libxml-twig-perl (1:3.50-1) ...
Setting up intltool (0.51.0-3) ...
Setting up dh-translations (131) ...
Setting up libnet-dbus-perl (1.1.0-4build1) ...
Setting up cdbs (0.4.150ubuntu1) ...
Setting up r-base-dev (3.3.2-1) ...
Processing triggers for libc-bin (2.24-9ubuntu2.2) ...
 ---> ddc34fd279f0
Removing intermediate container 449ec713ad02
Step 11/26 : RUN mkdir /src
 ---> Running in 9384ffe9c380
 ---> 94e52e249830
Removing intermediate container 9384ffe9c380
Step 12/26 : WORKDIR /src
 ---> 7c33d83beed7
Removing intermediate container c7cc3f4f8764
Step 13/26 : ADD requirements.txt /src/
 ---> 5579ba4c2364
Removing intermediate container dece6e0afe22
Step 14/26 : RUN pip install -r requirements.txt
 ---> Running in 181489be1ca6
Collecting alabaster==0.7.10 (from -r requirements.txt (line 1))
  Downloading alabaster-0.7.10-py2.py3-none-any.whl
Collecting amqp==1.4.9 (from -r requirements.txt (line 2))
  Downloading amqp-1.4.9-py2.py3-none-any.whl (51kB)
Collecting anyjson==0.3.3 (from -r requirements.txt (line 3))
  Downloading anyjson-0.3.3.tar.gz
Collecting Babel==2.4.0 (from -r requirements.txt (line 4))
  Downloading Babel-2.4.0-py2.py3-none-any.whl (6.8MB)
Collecting billiard==3.3.0.23 (from -r requirements.txt (line 5))
  Downloading billiard-3.3.0.23.tar.gz (151kB)
Collecting biopython==1.68 (from -r requirements.txt (line 6))
  Downloading biopython-1.68.tar.gz (14.4MB)
Collecting celery==3.1.25 (from -r requirements.txt (line 7))
  Downloading celery-3.1.25-py2.py3-none-any.whl (526kB)
Collecting coverage==4.4.1 (from -r requirements.txt (line 8))
  Downloading coverage-4.4.1-cp27-cp27mu-manylinux1_x86_64.whl (193kB)
Collecting cycler==0.10.0 (from -r requirements.txt (line 9))
  Downloading cycler-0.10.0-py2.py3-none-any.whl
Collecting dj-database-url==0.4.2 (from -r requirements.txt (line 10))
  Downloading dj_database_url-0.4.2-py2.py3-none-any.whl
Collecting Django==1.10 (from -r requirements.txt (line 11))
  Downloading Django-1.10-py2.py3-none-any.whl (6.8MB)
Collecting django-appconf==1.0.2 (from -r requirements.txt (line 12))
  Downloading django_appconf-1.0.2-py2.py3-none-any.whl
Collecting django-autoslug==1.9.3 (from -r requirements.txt (line 13))
  Downloading django_autoslug-1.9.3-py2.py3-none-any.whl
Collecting django-avatar==3.1.0 (from -r requirements.txt (line 14))
  Downloading django-avatar-3.1.0.tar.gz (1.6MB)
Collecting django-braces==1.11.0 (from -r requirements.txt (line 15))
  Downloading django_braces-1.11.0-py2.py3-none-any.whl
Collecting django-cache-url==2.0.0 (from -r requirements.txt (line 16))
  Downloading django_cache_url-2.0.0-py2.py3-none-any.whl
Collecting django-celery==3.2.1 (from -r requirements.txt (line 17))
  Downloading django_celery-3.2.1-py2-none-any.whl (63kB)
Collecting django-configurations==2.0 (from -r requirements.txt (line 18))
  Downloading django_configurations-2.0-py2.py3-none-any.whl
Collecting django-crispy-forms==1.6.1 (from -r requirements.txt (line 19))
  Downloading django_crispy_forms-1.6.1-py2.py3-none-any.whl (103kB)
Collecting django-debug-toolbar==1.8 (from -r requirements.txt (line 20))
  Downloading django_debug_toolbar-1.8-py2.py3-none-any.whl (205kB)
Collecting django-floppyforms==1.7.0 (from -r requirements.txt (line 21))
  Downloading django-floppyforms-1.7.0.tar.gz (2.4MB)
Collecting django-formtools==2.0 (from -r requirements.txt (line 22))
  Downloading django_formtools-2.0-py2.py3-none-any.whl (131kB)
Collecting django-lineage==0.2.0 (from -r requirements.txt (line 23))
  Downloading django-lineage-0.2.0.tar.gz
Collecting django-model-utils==3.0.0 (from -r requirements.txt (line 24))
  Downloading django-model-utils-3.0.0.tar.gz
Collecting django-otp==0.3.13 (from -r requirements.txt (line 25))
  Downloading django_otp-0.3.13-py2.py3-none-any.whl (55kB)
Collecting django-phonenumber-field==0.7.2 (from -r requirements.txt (line 26))
  Downloading django-phonenumber-field-0.7.2.tar.gz
Collecting django-redis==4.8.0 (from -r requirements.txt (line 27))
  Downloading django_redis-4.8.0-py2.py3-none-any.whl
Collecting django-secure==1.0.1 (from -r requirements.txt (line 28))
  Downloading django-secure-1.0.1.tar.gz
Collecting django-two-factor-auth==1.5.0 (from -r requirements.txt (line 29))
  Downloading django_two_factor_auth-1.5.0-py2.py3-none-any.whl (215kB)
Collecting django-user-sessions==1.4.0 (from -r requirements.txt (line 30))
  Downloading django_user_sessions-1.4.0-py2.py3-none-any.whl
Collecting docutils==0.13.1 (from -r requirements.txt (line 31))
  Downloading docutils-0.13.1-py2-none-any.whl (537kB)
Collecting fastqp==0.2 (from -r requirements.txt (line 32))
  Downloading fastqp-0.2.tar.gz
Collecting functools32==3.2.3.post2 (from -r requirements.txt (line 33))
  Downloading functools32-3.2.3-2.zip
Collecting gunicorn==19.7.1 (from -r requirements.txt (line 34))
  Downloading gunicorn-19.7.1-py2.py3-none-any.whl (111kB)
Collecting imagesize==0.7.1 (from -r requirements.txt (line 35))
  Downloading imagesize-0.7.1-py2.py3-none-any.whl
Collecting Jinja2==2.9.6 (from -r requirements.txt (line 36))
  Downloading Jinja2-2.9.6-py2.py3-none-any.whl (340kB)
Collecting kombu==3.0.37 (from -r requirements.txt (line 37))
  Downloading kombu-3.0.37-py2.py3-none-any.whl (240kB)
Collecting Mako==1.0.6 (from -r requirements.txt (line 38))
  Downloading Mako-1.0.6.tar.gz (575kB)
Collecting MarkupSafe==1.0 (from -r requirements.txt (line 39))
  Downloading MarkupSafe-1.0.tar.gz
Collecting matplotlib==2.0.0 (from -r requirements.txt (line 40))
  Downloading matplotlib-2.0.0-1-cp27-cp27mu-manylinux1_x86_64.whl (14.6MB)
Collecting mmtf-python==1.0.5 (from -r requirements.txt (line 41))
  Downloading mmtf_python-1.0.5-py2.py3-none-any.whl
Collecting msgpack-python==0.4.8 (from -r requirements.txt (line 42))
  Downloading msgpack-python-0.4.8.tar.gz (113kB)
Collecting numpy==1.12.1 (from -r requirements.txt (line 43))
  Downloading numpy-1.12.1-cp27-cp27mu-manylinux1_x86_64.whl (16.5MB)
Collecting olefile==0.44 (from -r requirements.txt (line 44))
  Downloading olefile-0.44.zip (74kB)
Collecting pandas==0.19.2 (from -r requirements.txt (line 45))
  Downloading pandas-0.19.2-cp27-cp27mu-manylinux1_x86_64.whl (17.2MB)
Collecting phonenumbers==7.7.5 (from -r requirements.txt (line 46))
  Downloading phonenumbers-7.7.5-py2.py3-none-any.whl (2.7MB)
Collecting Pillow==4.1.0 (from -r requirements.txt (line 47))
  Downloading Pillow-4.1.0-cp27-cp27mu-manylinux1_x86_64.whl (5.7MB)
Collecting psycopg2==2.7.1 (from -r requirements.txt (line 48))
  Downloading psycopg2-2.7.1-cp27-cp27mu-manylinux1_x86_64.whl (2.7MB)
Collecting Pygments==2.2.0 (from -r requirements.txt (line 49))
  Downloading Pygments-2.2.0-py2.py3-none-any.whl (841kB)
Collecting pyparsing==2.2.0 (from -r requirements.txt (line 50))
  Downloading pyparsing-2.2.0-py2.py3-none-any.whl (56kB)
Collecting python-dateutil==2.6.0 (from -r requirements.txt (line 51))
  Downloading python_dateutil-2.6.0-py2.py3-none-any.whl (194kB)
Collecting python-memcached==1.58 (from -r requirements.txt (line 52))
  Downloading python-memcached-1.58.tar.gz
Collecting pytz==2017.2 (from -r requirements.txt (line 53))
  Downloading pytz-2017.2-py2.py3-none-any.whl (484kB)
Collecting PyYAML==3.12 (from -r requirements.txt (line 54))
  Downloading PyYAML-3.12.tar.gz (253kB)
Collecting qrcode==4.0.4 (from -r requirements.txt (line 55))
  Downloading qrcode-4.0.4.tar.gz
Collecting redis==2.10.5 (from -r requirements.txt (line 56))
  Downloading redis-2.10.5-py2.py3-none-any.whl (60kB)
Collecting reportlab==3.4.0 (from -r requirements.txt (line 57))
  Downloading reportlab-3.4.0-cp27-cp27mu-manylinux1_x86_64.whl (3.7MB)
Collecting requests==2.14.2 (from -r requirements.txt (line 58))
  Downloading requests-2.14.2-py2.py3-none-any.whl (560kB)
Collecting scipy==0.19.0 (from -r requirements.txt (line 59))
  Downloading scipy-0.19.0-cp27-cp27mu-manylinux1_x86_64.whl (45.0MB)
Collecting simplesam==0.0.5 (from -r requirements.txt (line 60))
  Downloading simplesam-0.0.5.tar.gz
Collecting singledispatch==3.4.0.3 (from -r requirements.txt (line 61))
  Downloading singledispatch-3.4.0.3-py2.py3-none-any.whl
Requirement already satisfied: six==1.10.0 in /usr/lib/python2.7/dist-packages (from -r requirements.txt (line 62))
Collecting snowballstemmer==1.2.1 (from -r requirements.txt (line 63))
  Downloading snowballstemmer-1.2.1-py2.py3-none-any.whl (64kB)
Collecting Sphinx==1.6.1 (from -r requirements.txt (line 64))
  Downloading Sphinx-1.6.1-py2.py3-none-any.whl (1.9MB)
Collecting sphinxcontrib-websupport==1.0.1 (from -r requirements.txt (line 65))
  Downloading sphinxcontrib_websupport-1.0.1-py2.py3-none-any.whl
Collecting sqlparse==0.2.3 (from -r requirements.txt (line 66))
  Downloading sqlparse-0.2.3-py2.py3-none-any.whl
Collecting subprocess32==3.2.7 (from -r requirements.txt (line 67))
  Downloading subprocess32-3.2.7.tar.gz (54kB)
Collecting typing==3.6.1 (from -r requirements.txt (line 68))
  Downloading typing-3.6.1.tar.gz (66kB)
Collecting unicode-slugify==0.1.3 (from -r requirements.txt (line 69))
  Downloading unicode-slugify-0.1.3.tar.gz
Collecting Unidecode==0.4.20 (from -r requirements.txt (line 70))
  Downloading Unidecode-0.04.20-py2.py3-none-any.whl (228kB)
Collecting vine==1.1.3 (from -r requirements.txt (line 71))
  Downloading vine-1.1.3-py2.py3-none-any.whl
Collecting supervisor (from -r requirements.txt (line 72))
  Downloading supervisor-3.3.2.tar.gz (417kB)
Collecting blacktie (from -r requirements.txt (line 73))
  Downloading blacktie-0.2.1.2.tar.gz
Collecting south (from -r requirements.txt (line 74))
  Downloading South-1.0.2.tar.gz (96kB)
Collecting rpy2 (from -r requirements.txt (line 75))
  Downloading rpy2-2.8.6.tar.gz (191kB)
Requirement already satisfied: pip>=1.4.1 in /usr/lib/python2.7/dist-packages (from reportlab==3.4.0->-r requirements.txt (line 57))
Requirement already satisfied: setuptools>=2.2 in /usr/lib/python2.7/dist-packages (from reportlab==3.4.0->-r requirements.txt (line 57))
Collecting meld3>=0.6.5 (from supervisor->-r requirements.txt (line 72))
  Downloading meld3-1.0.2-py2.py3-none-any.whl
Building wheels for collected packages: anyjson, billiard, biopython, django-avatar, django-floppyforms, django-lineage, django-model-utils, django-phonenumber-field, django-secure, fastqp, functools32, Mako, MarkupSafe, msgpack-python, olefile, python-memcached, PyYAML, qrcode, simplesam, subprocess32, typing, unicode-slugify, supervisor, blacktie, south, rpy2
  Running setup.py bdist_wheel for anyjson: started
  Running setup.py bdist_wheel for anyjson: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/06/3d/74/f64c3ce3266df2598031818ecc86bc25c8ccede0723973f119
  Running setup.py bdist_wheel for billiard: started
  Running setup.py bdist_wheel for billiard: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/11/68/13/9f46e6b8760998754ce90ef87103ea7f4e80504ffc9f93a362
  Running setup.py bdist_wheel for biopython: started
  Running setup.py bdist_wheel for biopython: finished with status 'error'
  Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-DgQiKS/biopython/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/tmpeF2Wo8pip-wheel- --python-tag cp27:
  running bdist_wheel
  running build
  running build_py

  Numerical Python (NumPy) is not installed.

  This package is required for many Biopython features.  Please install
  it before you install Biopython. You can install Biopython anyway, but
  anything dependent on NumPy will not work. If you do this, and later
  install NumPy, you should then re-install Biopython.

  You can find NumPy at http://www.numpy.org


  ----------------------------------------
  Failed building wheel for biopython
  Running setup.py clean for biopython
  Running setup.py bdist_wheel for django-avatar: started
  Running setup.py bdist_wheel for django-avatar: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/91/cf/a7/8757a1a3d352317f0d988d7ad86b5ac57ea7b53f819f193fe2
  Running setup.py bdist_wheel for django-floppyforms: started
  Running setup.py bdist_wheel for django-floppyforms: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/4b/85/2e/65625b6d031bddf290452fe9b08faa69fbc8b12f34b1af940a
  Running setup.py bdist_wheel for django-lineage: started
  Running setup.py bdist_wheel for django-lineage: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/77/ca/da/f18117b7635f296168246476990b2f146691865870c1ea0a6b
  Running setup.py bdist_wheel for django-model-utils: started
  Running setup.py bdist_wheel for django-model-utils: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/43/7e/de/264884ca66f07c7026ef3e7e124e61697cc96e0ea2e2ad5378
  Running setup.py bdist_wheel for django-phonenumber-field: started
  Running setup.py bdist_wheel for django-phonenumber-field: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/1f/2e/f5/fb9983c285478acebd8ff6e53b125a907c7a7c2956767d8131
  Running setup.py bdist_wheel for django-secure: started
  Running setup.py bdist_wheel for django-secure: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/08/ab/cb/289813418053f58f49d6cb56363e833201bc26aa0aa0e164e2
  Running setup.py bdist_wheel for fastqp: started
  Running setup.py bdist_wheel for fastqp: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/ac/f5/96/bab31e6d45ea05544f88900f048c6a9fba7f00c20a2795798a
  Running setup.py bdist_wheel for functools32: started
  Running setup.py bdist_wheel for functools32: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/3c/d0/09/cd78d0ff4d6cfecfbd730782a7815a4571cd2cd4d2ed6e69d9
  Running setup.py bdist_wheel for Mako: started
  Running setup.py bdist_wheel for Mako: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/34/be/28/7999aa61d80a775c9e85a5a7d345777f73e87e6e30573e9551
  Running setup.py bdist_wheel for MarkupSafe: started
  Running setup.py bdist_wheel for MarkupSafe: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/88/a7/30/e39a54a87bcbe25308fa3ca64e8ddc75d9b3e5afa21ee32d57
  Running setup.py bdist_wheel for msgpack-python: started
  Running setup.py bdist_wheel for msgpack-python: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/2c/e7/e7/9031652a69d594665c5ca25e41d0fb3faa024e730b590e4402
  Running setup.py bdist_wheel for olefile: started
  Running setup.py bdist_wheel for olefile: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/20/58/49/cc7bd00345397059149a10b0259ef38b867935ea2ecff99a9b
  Running setup.py bdist_wheel for python-memcached: started
  Running setup.py bdist_wheel for python-memcached: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/16/75/11/86f65dfdcfcfbdaee336d5a3c125b5ac1c53973c4515c77ef5
  Running setup.py bdist_wheel for PyYAML: started
  Running setup.py bdist_wheel for PyYAML: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/2c/f7/79/13f3a12cd723892437c0cfbde1230ab4d82947ff7b3839a4fc
  Running setup.py bdist_wheel for qrcode: started
  Running setup.py bdist_wheel for qrcode: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/ee/8a/ba/a915b1d735f49c4676a56455e19c869d7e313bb67a00e2a320
  Running setup.py bdist_wheel for simplesam: started
  Running setup.py bdist_wheel for simplesam: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/4a/99/20/6310b2a8afeb0ebbdb8851cdf91c7c63f31dda8de0ac870233
  Running setup.py bdist_wheel for subprocess32: started
  Running setup.py bdist_wheel for subprocess32: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/7d/4c/a4/ce9ceb463dae01f4b95e670abd9afc8d65a45f38012f8030cc
  Running setup.py bdist_wheel for typing: started
  Running setup.py bdist_wheel for typing: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/b3/54/d1/d7ad0895b6f57c608afdf3ec5d2339c5d18ffcf2c2e0e0d9aa
  Running setup.py bdist_wheel for unicode-slugify: started
  Running setup.py bdist_wheel for unicode-slugify: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/1f/a2/1d/092d6d9dc106fdd7b87d1777564b087f2d163838e0b6f20c8b
  Running setup.py bdist_wheel for supervisor: started
  Running setup.py bdist_wheel for supervisor: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/3b/b9/0b/b9461287ea03b8a8dbb50002d0ea7cc28d518ae2ecc800c25e
  Running setup.py bdist_wheel for blacktie: started
  Running setup.py bdist_wheel for blacktie: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/cd/a9/bf/66b66f7556efca717b64cb9542c470401263cfd3f777b9a0ee
  Running setup.py bdist_wheel for south: started
  Running setup.py bdist_wheel for south: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/15/7b/35/788f2401ecf82b259bc2eade194276cd31524310c9706d7bcc
  Running setup.py bdist_wheel for rpy2: started
  Running setup.py bdist_wheel for rpy2: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/47/99/ac/4759aaf87f8b9e0af32c7da4fc3a22717a394418b6daa25d9f
Successfully built anyjson billiard django-avatar django-floppyforms django-lineage django-model-utils django-phonenumber-field django-secure fastqp functools32 Mako MarkupSafe msgpack-python olefile python-memcached PyYAML qrcode simplesam subprocess32 typing unicode-slugify supervisor blacktie south rpy2
Failed to build biopython
Installing collected packages: alabaster, amqp, anyjson, pytz, Babel, billiard, biopython, kombu, celery, coverage, cycler, dj-database-url, Django, django-appconf, django-autoslug, olefile, Pillow, django-avatar, django-braces, django-cache-url, django-celery, django-configurations, django-crispy-forms, sqlparse, django-debug-toolbar, django-floppyforms, django-formtools, django-lineage, django-model-utils, django-otp, phonenumbers, django-phonenumber-field, redis, django-redis, django-secure, qrcode, django-two-factor-auth, django-user-sessions, docutils, pyparsing, numpy, python-dateutil, functools32, subprocess32, matplotlib, scipy, simplesam, fastqp, gunicorn, imagesize, MarkupSafe, Jinja2, Mako, msgpack-python, mmtf-python, pandas, psycopg2, Pygments, python-memcached, PyYAML, reportlab, requests, singledispatch, snowballstemmer, sphinxcontrib-websupport, typing, Sphinx, Unidecode, unicode-slugify, vine, meld3, supervisor, rpy2, blacktie, south
  Running setup.py install for biopython: started
    Running setup.py install for biopython: finished with status 'done'
  Found existing installation: python-dateutil 2.5.3
    Not uninstalling python-dateutil at /usr/lib/python2.7/dist-packages, outside environment /usr
Successfully installed Babel-2.4.0 Django-1.10 Jinja2-2.9.6 Mako-1.0.6 MarkupSafe-1.0 Pillow-4.1.0 PyYAML-3.12 Pygments-2.2.0 Sphinx-1.6.1 Unidecode-0.4.20 alabaster-0.7.10 amqp-1.4.9 anyjson-0.3.3 billiard-3.3.0.23 biopython-1.68 blacktie-0.2.1.2 celery-3.1.25 coverage-4.4.1 cycler-0.10.0 dj-database-url-0.4.2 django-appconf-1.0.2 django-autoslug-1.9.3 django-avatar-3.1.0 django-braces-1.11.0 django-cache-url-2.0.0 django-celery-3.2.1 django-configurations-2.0 django-crispy-forms-1.6.1 django-debug-toolbar-1.8 django-floppyforms-1.7.0 django-formtools-2.0 django-lineage-0.2.0 django-model-utils-3.0.0 django-otp-0.3.13 django-phonenumber-field-0.7.2 django-redis-4.8.0 django-secure-1.0.1 django-two-factor-auth-1.5.0 django-user-sessions-1.4.0 docutils-0.13.1 fastqp-0.2 functools32-3.2.3.post2 gunicorn-19.7.1 imagesize-0.7.1 kombu-3.0.37 matplotlib-2.0.0 meld3-1.0.2 mmtf-python-1.0.5 msgpack-python-0.4.8 numpy-1.12.1 olefile-0.44 pandas-0.19.2 phonenumbers-7.7.5 psycopg2-2.7.1 pyparsing-2.2.0 python-dateutil-2.6.0 python-memcached-1.58 pytz-2017.2 qrcode-4.0.4 redis-2.10.5 reportlab-3.4.0 requests-2.14.2 rpy2-2.8.6 scipy-0.19.0 simplesam-0.0.5 singledispatch-3.4.0.3 snowballstemmer-1.2.1 south-1.0.2 sphinxcontrib-websupport-1.0.1 sqlparse-0.2.3 subprocess32-3.2.7 supervisor-3.3.2 typing-3.6.1 unicode-slugify-0.1.3 vine-1.1.3
 ---> 166d8c57b91e
Removing intermediate container 181489be1ca6
Step 15/26 : ADD config/nginx/nginx.conf /etc/nginx/nginx.conf
 ---> ee5a70e23c6f
Removing intermediate container 5ff8d5168d8f
Step 16/26 : ADD config/nginx/django.conf /etc/nginx/conf.d/django.conf
 ---> 9cbbfcd452a2
Removing intermediate container 3e98e5b19639
Step 17/26 : ADD ./bin /app/bin
 ---> b724b5d6e466
Removing intermediate container be8beabe9eaa
Step 18/26 : ADD ./supervisord /supervisord
lstat supervisord: no such file or directory
mohameds-mbp-2:webapp_dev mohdsammour$ docker run --rm --net=host -e ROLE=local -d teleogene
Unable to find image 'teleogene:latest' locally
docker: Error response from daemon: repository teleogene not found: does not exist or no pull access.
See 'docker run --help'.