API tools faq
paste
Advertisement
Guest User

Untitled

a guest
Jan 20th, 2022
322
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 7.25 KB | None | 0 0
raw download clone embed print report
  1. #affine mode: YES
  2. dates_wtjack -i Russia_Steppe_Eneolithic -m /home/krotx/projects/1240k/v44.3_1240K_public/1240k.snp -s 0.001 -n 22 -l 0.450 -c 3 -r 1380056479 -a
  3. ## affine mode
  4. chrom: 1 count: 90745; chrom: 2 count: 96080; chrom: 3 count: 79458; chrom: 4 count: 69840; chrom: 5 count: 72051; chrom: 6 count: 76907; chrom: 7 count: 61033; chrom: 8 count: 62296; chrom: 9 count: 51442; chrom: 10 count: 59600; chrom: 11 count: 55706; chrom: 12 count: 54708; chrom: 13 count: 39492; chrom: 14 count: 36987; chrom: 15 count: 35044; chrom: 16 count: 35065; chrom: 17 count: 30016; chrom: 18 count: 34545; chrom: 19 count: 18736; chrom: 20 count: 29743; chrom: 21 count: 16313; chrom: 22 count: 16042;
  5.  
  6. Pop: Russia_Steppe_Eneolithic
  7. Mean square error of fit
  8. dates_expfit -i Russia_Steppe_Eneolithic.out:1 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056480 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  9. Chr 1: 1 90745.000000 102.225000
  10. Mean square error: 0.000001135
  11. dates_expfit -i Russia_Steppe_Eneolithic.out:2 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056481 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  12. Chr 2: 2 96080.000000 97.251000
  13. Mean square error: 0.000001159
  14. dates_expfit -i Russia_Steppe_Eneolithic.out:3 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056482 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  15. Chr 3: 3 79458.000000 79.865000
  16. Mean square error: 0.000001152
  17. dates_expfit -i Russia_Steppe_Eneolithic.out:4 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056483 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  18. Chr 4: 4 69840.000000 90.712000
  19. Mean square error: 0.000001130
  20. dates_expfit -i Russia_Steppe_Eneolithic.out:5 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056484 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  21. Chr 5: 5 72051.000000 101.409000
  22. Mean square error: 0.000001132
  23. dates_expfit -i Russia_Steppe_Eneolithic.out:6 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056485 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  24. Chr 6: 6 76907.000000 108.238000
  25. Mean square error: 0.000001135
  26. dates_expfit -i Russia_Steppe_Eneolithic.out:7 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056486 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  27. Chr 7: 7 61033.000000 99.361000
  28. Mean square error: 0.000001099
  29. dates_expfit -i Russia_Steppe_Eneolithic.out:8 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056487 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  30. Chr 8: 8 62296.000000 97.368000
  31. Mean square error: 0.000001093
  32. dates_expfit -i Russia_Steppe_Eneolithic.out:9 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056488 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  33. Chr 9: 9 51442.000000 98.456000
  34. Mean square error: 0.000001099
  35. dates_expfit -i Russia_Steppe_Eneolithic.out:10 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056489 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  36. Chr 10: 10 59600.000000 96.070000
  37. Mean square error: 0.000001117
  38. dates_expfit -i Russia_Steppe_Eneolithic.out:11 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056490 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  39. Chr 11: 11 55706.000000 93.502000
  40. Mean square error: 0.000001124
  41. dates_expfit -i Russia_Steppe_Eneolithic.out:12 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056491 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  42. Chr 12: 12 54708.000000 87.229000
  43. Mean square error: 0.000001151
  44. dates_expfit -i Russia_Steppe_Eneolithic.out:13 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056492 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  45. Chr 13: 13 39492.000000 107.024000
  46. Mean square error: 0.000001077
  47. dates_expfit -i Russia_Steppe_Eneolithic.out:14 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056493 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  48. Chr 14: 14 36987.000000 102.841000
  49. Mean square error: 0.000001081
  50. dates_expfit -i Russia_Steppe_Eneolithic.out:15 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056494 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  51. Chr 15: 15 35044.000000 95.490000
  52. Mean square error: 0.000001061
  53. dates_expfit -i Russia_Steppe_Eneolithic.out:16 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056495 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  54. Chr 16: 16 35065.000000 93.458000
  55. Mean square error: 0.000001079
  56. dates_expfit -i Russia_Steppe_Eneolithic.out:17 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056496 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  57. Chr 17: 17 30016.000000 105.010000
  58. Mean square error: 0.000001085
  59. dates_expfit -i Russia_Steppe_Eneolithic.out:18 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056497 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  60. Chr 18: 18 34545.000000 94.886000
  61. Mean square error: 0.000001069
  62. dates_expfit -i Russia_Steppe_Eneolithic.out:19 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056498 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  63. Chr 19: 19 18736.000000 98.469000
  64. Mean square error: 0.000001068
  65. dates_expfit -i Russia_Steppe_Eneolithic.out:20 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056499 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  66. Chr 20: 20 29743.000000 98.696000
  67. Mean square error: 0.000001058
  68. dates_expfit -i Russia_Steppe_Eneolithic.out:21 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056500 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  69. Chr 21: 21 16313.000000 96.707000
  70. Mean square error: 0.000001055
  71. dates_expfit -i Russia_Steppe_Eneolithic.out:22 -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -c 3 -r 1380056501 -a -s 0.001 >>expfit_Russia_Steppe_Eneolithic.log
  72. Chr 22: 22 16042.000000 98.723000
  73. Mean square error: 0.000001060
  74. Overall: dates_expfit -i Russia_Steppe_Eneolithic.out -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -a -r 1380056479 -c 3 -s 0.001 >expfit_Russia_Steppe_Eneolithic.flog
  75. 97.446
  76.  
  77. Jackknife summary:
  78. 1 90745.000000 102.225000
  79. 2 96080.000000 97.251000
  80. 3 79458.000000 79.865000
  81. 4 69840.000000 90.712000
  82. 5 72051.000000 101.409000
  83. 6 76907.000000 108.238000
  84. 7 61033.000000 99.361000
  85. 8 62296.000000 97.368000
  86. 9 51442.000000 98.456000
  87. 10 59600.000000 96.070000
  88. 11 55706.000000 93.502000
  89. 12 54708.000000 87.229000
  90. 13 39492.000000 107.024000
  91. 14 36987.000000 102.841000
  92. 15 35044.000000 95.490000
  93. 16 35065.000000 93.458000
  94. 17 30016.000000 105.010000
  95. 18 34545.000000 94.886000
  96. 19 18736.000000 98.469000
  97. 20 29743.000000 98.696000
  98. 21 16313.000000 96.707000
  99. 22 16042.000000 98.723000
  100. jmean: 0.000 std. err: 97.857 jmean (years): 0.000 std. err(years): 2837.853
  101. dates_plot -i Russia_Steppe_Eneolithic -s 0.001 -l 0.450 -h 20 -r 1380056479 -a -c 3
  102. #affine mode: YES
  103. dates_expfit -i Russia_Steppe_Eneolithic.out -n 1 -o Russia_Steppe_Eneolithic.fit -l 0.450 -s 0.001 -a -c 3 -r 1380056479 >Russia_Steppe_Eneolithic_expfit.log
  104.  
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!