API tools faq
paste
Advertisement
Light1992

SequenceServer Log

Light1992
May 22nd, 2019
106
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 2.32 KB | None | 0 0
raw download clone embed print report
  1. [genomica@localhost BLAST]$ sequenceserver -D /home/genomica/DATA/Databases/BLAST -r links.rb -p 4570
  2. /usr/local/share/gems/gems/sequenceserver-1.0.11/bin/sequenceserver:144: warning: Insecure world writable dir /home/genomica in PATH, mode 040777
  3. [2019-05-22 11:17:27] DEBUG Reading configuration file: /home/genomica/.sequenceserver.conf.
  4. [2019-05-22 11:17:27] DEBUG Will use NCBI BLAST+ at: /home/genomica/DATA/Software/ncbi-blast-2.8.1+/bin
  5. [2019-05-22 11:17:27] DEBUG Will use BLAST+ databases at: /home/genomica/DATA/Databases/BLAST
  6. [2019-05-22 11:17:28] DEBUG Found nucleotide database 'CDS Farga' at '/home/genomica/DATA/Databases/BLAST/CDS_Farga.fa'
  7. [2019-05-22 11:17:28] DEBUG Found nucleotide database 'Genoma_Farga' at '/home/genomica/DATA/Databases/BLAST/Genoma_Farga.fa'
  8. [2019-05-22 11:17:28] DEBUG Found nucleotide database 'Genoma_Sylvestris' at '/home/genomica/DATA/Databases/BLAST/Genoma_Sylvestris.fna'
  9. [2019-05-22 11:17:28] DEBUG Found protein database 'LongestPeptide Farga' at '/home/genomica/DATA/Databases/BLAST/LongestPeptide_Farga.fa'
  10. [2019-05-22 11:17:28] DEBUG Found nucleotide database 'NonCoding Transcripts Farga' at '/home/genomica/DATA/Databases/BLAST/NonCoding_Transcripts_Farga.fa'
  11. [2019-05-22 11:17:28] DEBUG Found protein database 'Peptide Farga' at '/home/genomica/DATA/Databases/BLAST/Peptide_Farga.fa'
  12. [2019-05-22 11:17:28] DEBUG Found protein database 'Proteine Sylvestris' at '/home/genomica/DATA/Databases/BLAST/Proteine_Sylvestris.faa'
  13. [2019-05-22 11:17:28] DEBUG Found nucleotide database 'RNA Sylvestris' at '/home/genomica/DATA/Databases/BLAST/RNA_Sylvestris.fna'
  14. [2019-05-22 11:17:28] DEBUG Found nucleotide database 'Transcripts Farga' at '/home/genomica/DATA/Databases/BLAST/Transcripts_Farga.fa'
  15. [2019-05-22 11:17:28] DEBUG Loading extension: /mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Databases/BLAST/links.rb
  16. [2019-05-22 11:17:28] DEBUG Will use 1 threads to run BLAST.
  17. [2019-05-22 11:17:28] WARN Will listen on all interfaces (0.0.0.0). Consider using 127.0.0.1 (--host option).
  18. [2019-05-22 11:17:28] INFO WEBrick 1.3.1
  19. [2019-05-22 11:17:28] INFO ruby 2.0.0 (2015-12-16) [x86_64-linux]
  20. [2019-05-22 11:17:28] INFO WEBrick::HTTPServer#start: pid=16732 port=4570
  21. ** SequenceServer is ready.
  22. Go to http://localhost:4570 in your browser and start BLASTing!
  23. Press CTRL+C to quit.
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!