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namazga da381

misnomer001
Jul 31st, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: IndiaN
  5. indivname: IndiaN.ind
  6. snpname: IndiaN.snp
  7. genotypename: IndiaN.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. oldallsnps: NO
  14. ## qpAdm version: 1520
  15. seed: 1848692561
  16. inbreed set NO
  17. inbreed set NO
  18. tmp: /tmp/fsx.3233
  19.  
  20. left pops:
  21. DA381
  22. Iran_GanjDareh_N
  23. CHG
  24. WSHG
  25.  
  26. right pops:
  27. Mbuti.DG
  28. Russia_Ust_Ishim.DG
  29. Sunghir
  30. Morocco_Iberomaurusian
  31. Russia_Yana_UP.SG
  32. Turkey_Epipaleolithic
  33. Czech_Vestonice16
  34. EHG
  35. Azerbaijan_Caucasus_lowlands_LN
  36. Russia_Khvalynsk_Eneolithic
  37. Turkey_N
  38. China_Paleo
  39. ONG.SG
  40. Iran_ShahrISokhta_BA2_published
  41.  
  42. codimension 1
  43. f4info:
  44. f4rank: 2 dof: 11 chisq: 17.063 tail: 0.106015829 dofdiff: 13 chisqdiff: -17.063 taildiff: 1
  45. B:
  46. scale 1.000 1.000
  47. Russia_Ust_Ishim.DG 0.468 0.008
  48. Sunghir 0.688 0.861
  49. Morocco_Iberomaurusian 0.201 0.669
  50. Russia_Yana_UP.SG 0.944 0.247
  51. Turkey_Epipaleolithic 0.212 1.615
  52. Czech_Vestonice16 0.811 0.037
  53. EHG 2.438 -1.081
  54. Azerbaijan_Caucasus_lowlands_LN -0.180 1.386
  55. Russia_Khvalynsk_Eneolithic 1.946 -0.703
  56. Turkey_N 0.005 1.615
  57. China_Paleo 0.738 -1.225
  58. ONG.SG 0.598 -0.303
  59. Iran_ShahrISokhta_BA2_published 0.074 -1.164
  60. A:
  61. scale 83.397 481.879
  62. Iran_GanjDareh_N -0.340 -1.200
  63. CHG 0.068 0.733
  64. WSHG 1.697 -1.011
  65.  
  66.  
  67. full rank
  68. f4info:
  69. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 17.063 taildiff: 0.106015829
  70. B:
  71. scale 339.774 231.447 44.058
  72. Russia_Ust_Ishim.DG 0.079 0.720 0.521
  73. Sunghir -0.721 1.282 0.663
  74. Morocco_Iberomaurusian -0.605 0.477 0.154
  75. Russia_Yana_UP.SG -1.098 0.677 0.879
  76. Turkey_Epipaleolithic -0.621 1.657 0.168
  77. Czech_Vestonice16 -0.046 1.300 0.889
  78. EHG -2.093 0.443 2.331
  79. Azerbaijan_Caucasus_lowlands_LN 0.053 1.386 -0.167
  80. Russia_Khvalynsk_Eneolithic -1.028 1.022 1.943
  81. Turkey_N -0.828 1.109 -0.066
  82. China_Paleo 1.295 0.853 0.947
  83. ONG.SG 0.250 0.707 0.675
  84. Iran_ShahrISokhta_BA2_published 1.628 0.315 0.279
  85. A:
  86. scale 1.732 1.732 1.732
  87. Iran_GanjDareh_N 1.732 0.000 0.000
  88. CHG 0.000 1.732 0.000
  89. WSHG 0.000 0.000 1.732
  90.  
  91.  
  92. best coefficients: 0.340 0.617 0.043
  93. totmean: 0.340 0.617 0.043
  94. boot mean: 0.340 0.617 0.043
  95. std. errors: 0.102 0.107 0.023
  96.  
  97. error covariance (* 1,000,000)
  98. 10363 -10669 305
  99. -10669 11502 -833
  100. 305 -833 528
  101.  
  102.  
  103. summ: DA381 3 0.106016 0.340 0.617 0.043 10363 -10669 305 11502 -833 ...
  104. 528
  105.  
  106. fixed pat wt dof chisq tail prob
  107. 000 0 11 17.063 0.106016 0.340 0.617 0.043
  108. 001 1 12 21.918 0.0384454 0.313 0.687 0.000
  109. 010 1 12 59.630 2.63627e-08 0.912 0.000 0.088
  110. 100 1 12 29.311 0.00354163 0.000 0.965 0.035
  111. 011 2 13 76.018 6.14991e-11 1.000 0.000 0.000
  112. 101 2 13 31.363 0.00298273 0.000 1.000 0.000
  113. 110 2 13 1376.911 0 0.000 0.000 1.000
  114. best pat: 000 0.106016 - -
  115. best pat: 001 0.0384454 chi(nested): 4.855 p-value for nested model: 0.0275663
  116. best pat: 101 0.00298273 chi(nested): 9.445 p-value for nested model: 0.0021175
  117.  
  118. coeffs: 0.340 0.617 0.043
  119.  
  120. ## dscore:: f_4(Base, Fit, Rbase, right2)
  121. ## genstat:: f_4(Base, Fit, right1, right2)
  122.  
  123. details: Iran_GanjDareh_N Russia_Ust_Ishim.DG 0.000233 0.130620
  124. details: CHG Russia_Ust_Ishim.DG 0.003112 1.558217
  125. details: WSHG Russia_Ust_Ishim.DG 0.011834 5.518561
  126. dscore: Russia_Ust_Ishim.DG f4: 0.002510 Z: 1.392988
  127.  
  128. details: Iran_GanjDareh_N Sunghir -0.002122 -1.374573
  129. details: CHG Sunghir 0.005540 3.391711
  130. details: WSHG Sunghir 0.015047 8.583402
  131. dscore: Sunghir f4: 0.003344 Z: 2.265310
  132.  
  133. details: Iran_GanjDareh_N Morocco_Iberomaurusian -0.001781 -1.287525
  134. details: CHG Morocco_Iberomaurusian 0.002063 1.378220
  135. details: WSHG Morocco_Iberomaurusian 0.003499 2.346841
  136. dscore: Morocco_Iberomaurusian f4: 0.000817 Z: 0.605012
  137.  
  138. details: Iran_GanjDareh_N Russia_Yana_UP.SG -0.003231 -2.027007
  139. details: CHG Russia_Yana_UP.SG 0.002924 1.665154
  140. details: WSHG Russia_Yana_UP.SG 0.019960 10.803800
  141. dscore: Russia_Yana_UP.SG f4: 0.001567 Z: 0.991057
  142.  
  143. details: Iran_GanjDareh_N Turkey_Epipaleolithic -0.001828 -0.962462
  144. details: CHG Turkey_Epipaleolithic 0.007158 3.410144
  145. details: WSHG Turkey_Epipaleolithic 0.003806 1.737059
  146. dscore: Turkey_Epipaleolithic f4: 0.003956 Z: 2.120524
  147.  
  148. details: Iran_GanjDareh_N Czech_Vestonice16 -0.000136 -0.070132
  149. details: CHG Czech_Vestonice16 0.005616 2.587997
  150. details: WSHG Czech_Vestonice16 0.020181 8.859309
  151. dscore: Czech_Vestonice16 f4: 0.004289 Z: 2.227565
  152.  
  153. details: Iran_GanjDareh_N EHG -0.006160 -3.700333
  154. details: CHG EHG 0.001916 1.029120
  155. details: WSHG EHG 0.052913 26.966152
  156. dscore: EHG f4: 0.001375 Z: 0.824093
  157.  
  158. details: Iran_GanjDareh_N Azerbaijan_Caucasus_lowlands_LN 0.000156 0.096955
  159. details: CHG Azerbaijan_Caucasus_lowlands_LN 0.005988 3.366367
  160. details: WSHG Azerbaijan_Caucasus_lowlands_LN -0.003790 -2.132794
  161. dscore: Azerbaijan_Caucasus_lowlands_LN f4: 0.003581 Z: 2.256270
  162.  
  163. details: Iran_GanjDareh_N Russia_Khvalynsk_Eneolithic -0.003027 -1.692284
  164. details: CHG Russia_Khvalynsk_Eneolithic 0.004414 2.202459
  165. details: WSHG Russia_Khvalynsk_Eneolithic 0.044107 20.561911
  166. dscore: Russia_Khvalynsk_Eneolithic f4: 0.003600 Z: 1.994615
  167.  
  168. details: Iran_GanjDareh_N Turkey_N -0.002437 -1.963555
  169. details: CHG Turkey_N 0.004792 3.468991
  170. details: WSHG Turkey_N -0.001495 -1.054362
  171. dscore: Turkey_N f4: 0.002061 Z: 1.679587
  172.  
  173. details: Iran_GanjDareh_N China_Paleo 0.003810 2.373754
  174. details: CHG China_Paleo 0.003684 2.073583
  175. details: WSHG China_Paleo 0.021487 11.223826
  176. dscore: China_Paleo f4: 0.004497 Z: 2.825328
  177.  
  178. details: Iran_GanjDareh_N ONG.SG 0.000737 0.475363
  179. details: CHG ONG.SG 0.003054 1.821480
  180. details: WSHG ONG.SG 0.015319 8.576273
  181. dscore: ONG.SG f4: 0.002796 Z: 1.822844
  182.  
  183. details: Iran_GanjDareh_N Iran_ShahrISokhta_BA2_published 0.004791 3.379844
  184. details: CHG Iran_ShahrISokhta_BA2_published 0.001360 0.873849
  185. details: WSHG Iran_ShahrISokhta_BA2_published 0.006333 3.846046
  186. dscore: Iran_ShahrISokhta_BA2_published f4: 0.002742 Z: 1.941579
  187.  
  188. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 1.393
  189. gendstat: Mbuti.DG Sunghir 2.265
  190. gendstat: Mbuti.DG Morocco_Iberomaurusian 0.605
  191. gendstat: Mbuti.DG Russia_Yana_UP.SG 0.991
  192. gendstat: Mbuti.DG Turkey_Epipaleolithic 2.121
  193. gendstat: Mbuti.DG Czech_Vestonice16 2.228
  194. gendstat: Mbuti.DG EHG 0.824
  195. gendstat: Mbuti.DG Azerbaijan_Caucasus_lowlands_LN 2.256
  196. gendstat: Mbuti.DG Russia_Khvalynsk_Eneolithic 1.995
  197. gendstat: Mbuti.DG Turkey_N 1.680
  198. gendstat: Mbuti.DG China_Paleo 2.825
  199. gendstat: Mbuti.DG ONG.SG 1.823
  200. gendstat: Mbuti.DG Iran_ShahrISokhta_BA2_published 1.942
  201. gendstat: Russia_Ust_Ishim.DG Sunghir 0.483
  202. gendstat: Russia_Ust_Ishim.DG Morocco_Iberomaurusian -0.908
  203. gendstat: Russia_Ust_Ishim.DG Russia_Yana_UP.SG -0.495
  204. gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.661
  205. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 0.827
  206. gendstat: Russia_Ust_Ishim.DG EHG -0.545
  207. gendstat: Russia_Ust_Ishim.DG Azerbaijan_Caucasus_lowlands_LN 0.530
  208. gendstat: Russia_Ust_Ishim.DG Russia_Khvalynsk_Eneolithic 0.512
  209. gendstat: Russia_Ust_Ishim.DG Turkey_N -0.257
  210. gendstat: Russia_Ust_Ishim.DG China_Paleo 1.034
  211. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.153
  212. gendstat: Russia_Ust_Ishim.DG Iran_ShahrISokhta_BA2_published 0.128
  213. gendstat: Sunghir Morocco_Iberomaurusian -1.670
  214. gendstat: Sunghir Russia_Yana_UP.SG -1.216
  215. gendstat: Sunghir Turkey_Epipaleolithic 0.322
  216. gendstat: Sunghir Czech_Vestonice16 0.548
  217. gendstat: Sunghir EHG -1.235
  218. gendstat: Sunghir Azerbaijan_Caucasus_lowlands_LN 0.139
  219. gendstat: Sunghir Russia_Khvalynsk_Eneolithic 0.146
  220. gendstat: Sunghir Turkey_N -0.997
  221. gendstat: Sunghir China_Paleo 0.738
  222. gendstat: Sunghir ONG.SG -0.370
  223. gendstat: Sunghir Iran_ShahrISokhta_BA2_published -0.417
  224. gendstat: Morocco_Iberomaurusian Russia_Yana_UP.SG 0.466
  225. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic 1.657
  226. gendstat: Morocco_Iberomaurusian Czech_Vestonice16 1.784
  227. gendstat: Morocco_Iberomaurusian EHG 0.332
  228. gendstat: Morocco_Iberomaurusian Azerbaijan_Caucasus_lowlands_LN 1.642
  229. gendstat: Morocco_Iberomaurusian Russia_Khvalynsk_Eneolithic 1.530
  230. gendstat: Morocco_Iberomaurusian Turkey_N 0.987
  231. gendstat: Morocco_Iberomaurusian China_Paleo 2.183
  232. gendstat: Morocco_Iberomaurusian ONG.SG 1.246
  233. gendstat: Morocco_Iberomaurusian Iran_ShahrISokhta_BA2_published 1.249
  234. gendstat: Russia_Yana_UP.SG Turkey_Epipaleolithic 1.256
  235. gendstat: Russia_Yana_UP.SG Czech_Vestonice16 1.383
  236. gendstat: Russia_Yana_UP.SG EHG -0.116
  237. gendstat: Russia_Yana_UP.SG Azerbaijan_Caucasus_lowlands_LN 1.139
  238. gendstat: Russia_Yana_UP.SG Russia_Khvalynsk_Eneolithic 1.109
  239. gendstat: Russia_Yana_UP.SG Turkey_N 0.363
  240. gendstat: Russia_Yana_UP.SG China_Paleo 1.864
  241. gendstat: Russia_Yana_UP.SG ONG.SG 0.802
  242. gendstat: Russia_Yana_UP.SG Iran_ShahrISokhta_BA2_published 0.761
  243. gendstat: Turkey_Epipaleolithic Czech_Vestonice16 0.148
  244. gendstat: Turkey_Epipaleolithic EHG -1.323
  245. gendstat: Turkey_Epipaleolithic Azerbaijan_Caucasus_lowlands_LN -0.188
  246. gendstat: Turkey_Epipaleolithic Russia_Khvalynsk_Eneolithic -0.173
  247. gendstat: Turkey_Epipaleolithic Turkey_N -1.241
  248. gendstat: Turkey_Epipaleolithic China_Paleo 0.272
  249. gendstat: Turkey_Epipaleolithic ONG.SG -0.602
  250. gendstat: Turkey_Epipaleolithic Iran_ShahrISokhta_BA2_published -0.664
  251. gendstat: Czech_Vestonice16 EHG -1.420
  252. gendstat: Czech_Vestonice16 Azerbaijan_Caucasus_lowlands_LN -0.339
  253. gendstat: Czech_Vestonice16 Russia_Khvalynsk_Eneolithic -0.326
  254. gendstat: Czech_Vestonice16 Turkey_N -1.238
  255. gendstat: Czech_Vestonice16 China_Paleo 0.103
  256. gendstat: Czech_Vestonice16 ONG.SG -0.746
  257. gendstat: Czech_Vestonice16 Iran_ShahrISokhta_BA2_published -0.818
  258. gendstat: EHG Azerbaijan_Caucasus_lowlands_LN 1.203
  259. gendstat: EHG Russia_Khvalynsk_Eneolithic 1.411
  260. gendstat: EHG Turkey_N 0.487
  261. gendstat: EHG China_Paleo 1.768
  262. gendstat: EHG ONG.SG 0.838
  263. gendstat: EHG Iran_ShahrISokhta_BA2_published 0.838
  264. gendstat: Azerbaijan_Caucasus_lowlands_LN Russia_Khvalynsk_Eneolithic 0.010
  265. gendstat: Azerbaijan_Caucasus_lowlands_LN Turkey_N -1.148
  266. gendstat: Azerbaijan_Caucasus_lowlands_LN China_Paleo 0.502
  267. gendstat: Azerbaijan_Caucasus_lowlands_LN ONG.SG -0.436
  268. gendstat: Azerbaijan_Caucasus_lowlands_LN Iran_ShahrISokhta_BA2_published -0.538
  269. gendstat: Russia_Khvalynsk_Eneolithic Turkey_N -0.966
  270. gendstat: Russia_Khvalynsk_Eneolithic China_Paleo 0.475
  271. gendstat: Russia_Khvalynsk_Eneolithic ONG.SG -0.443
  272. gendstat: Russia_Khvalynsk_Eneolithic Iran_ShahrISokhta_BA2_published -0.491
  273. gendstat: Turkey_N China_Paleo 1.613
  274. gendstat: Turkey_N ONG.SG 0.546
  275. gendstat: Turkey_N Iran_ShahrISokhta_BA2_published 0.563
  276. gendstat: China_Paleo ONG.SG -1.143
  277. gendstat: China_Paleo Iran_ShahrISokhta_BA2_published -1.086
  278. gendstat: ONG.SG Iran_ShahrISokhta_BA2_published -0.039
  279.  
  280. removing /tmp/fsx.3233
  281. ##end of qpAdm: 9.114 seconds cpu 1.122 Mbytes in use
  282.  
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