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misnomer001

Birhor Dai pass

misnomer001
Jul 30th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. S1: bir2
  11. S1X: bir2
  12. indivname: bir2.ind
  13. snpname: bir2.snp
  14. genotypename: bir2.geno
  15. ## qpAdm version: 1520
  16. seed: 1633739497
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.2599
  20.  
  21. left pops:
  22. Birhor
  23. GanjDarehN
  24. Tarim_EMBA1
  25. ONG.SG
  26. Dai.DG
  27.  
  28. right pops:
  29. Mbuti.DG
  30. Cpaleo
  31. WSHG
  32. EHG
  33. IG_Serbia
  34. PPN
  35. Shamanka_En
  36. CHG
  37. Turkey_N
  38. Chokhopani
  39.  
  40. codimension 1
  41. f4info:
  42. f4rank: 3 dof: 6 chisq: 11.421 tail: 0.0761955047 dofdiff: 8 chisqdiff: -11.421 taildiff: 1
  43. B:
  44. scale 1.000 1.000 1.000
  45. Cpaleo -0.277 1.003 -0.774
  46. WSHG 2.045 0.676 -1.139
  47. EHG 1.722 0.382 -1.055
  48. IG_Serbia 0.816 -0.032 -0.158
  49. PPN 0.462 -0.500 1.155
  50. Shamanka_En -0.096 1.781 0.900
  51. CHG 0.643 -0.726 1.451
  52. Turkey_N 0.498 -0.500 0.940
  53. Chokhopani -0.476 1.786 0.914
  54. A:
  55. scale 53.588 84.369 280.392
  56. GanjDarehN 0.581 -1.487 1.278
  57. Tarim_EMBA1 1.905 0.508 0.055
  58. ONG.SG -0.181 0.064 -0.479
  59. Dai.DG 0.028 1.236 1.461
  60.  
  61.  
  62. full rank
  63. f4info:
  64. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 6 chisqdiff: 11.421 taildiff: 0.0761955047
  65. B:
  66. scale 47.112 27.846 223.352 67.004
  67. Cpaleo -1.158 -0.119 0.336 0.681
  68. WSHG 0.244 2.147 -1.140 0.338
  69. EHG 0.300 1.750 -1.310 0.021
  70. IG_Serbia 0.392 0.798 -0.944 -0.089
  71. PPN 0.874 0.374 -1.300 -0.121
  72. Shamanka_En -1.348 0.216 -0.167 2.065
  73. CHG 1.247 0.533 -1.352 -0.202
  74. Turkey_N 0.855 0.414 -1.150 -0.173
  75. Chokhopani -1.578 -0.184 -0.331 2.016
  76. A:
  77. scale 2.000 2.000 2.000 2.000
  78. GanjDarehN 2.000 0.000 0.000 0.000
  79. Tarim_EMBA1 0.000 2.000 0.000 0.000
  80. ONG.SG 0.000 0.000 2.000 0.000
  81. Dai.DG 0.000 0.000 0.000 2.000
  82.  
  83.  
  84. best coefficients: 0.136 0.025 0.722 0.116
  85. totmean: 0.136 0.025 0.722 0.116
  86. boot mean: 0.136 0.025 0.723 0.116
  87. std. errors: 0.019 0.009 0.043 0.030
  88.  
  89. error covariance (* 1,000,000)
  90. 369 -83 -710 424
  91. -83 80 85 -82
  92. -710 85 1885 -1259
  93. 424 -82 -1259 917
  94.  
  95.  
  96. summ: Birhor 4 0.076196 0.136 0.025 0.723 0.116 369 -83 -710 424 80 ...
  97. 85 -82 1885 -1259 917
  98.  
  99. fixed pat wt dof chisq tail prob
  100. 0000 0 6 11.421 0.0761955 0.136 0.025 0.722 0.116
  101. 0001 1 7 26.411 0.000425224 0.082 0.033 0.885 0.000
  102. 0010 1 7 366.818 0 0.396 0.002 0.000 0.602
  103. 0100 1 7 561.356 0 0.482 0.000 -0.246 0.763 infeasible
  104. 1000 1 7 48.003 3.55651e-08 0.000 0.050 1.009 -0.060 infeasible
  105. 0011 2 8 2792.245 0 1.079 -0.079 0.000 0.000 infeasible
  106. 0101 2 8 36.566 1.38287e-05 0.105 0.000 0.895 0.000
  107. 0110 2 8 366.156 0 0.401 0.000 0.000 0.599
  108. 1001 2 8 52.799 1.17966e-08 0.000 0.053 0.947 0.000
  109. 1010 2 8 1679.395 0 0.000 0.142 0.000 0.858
  110. 1100 2 8 70.857 3.31749e-12 0.000 0.000 1.086 -0.086 infeasible
  111. 0111 3 9 2793.067 0 1.000 0.000 0.000 0.000
  112. 1011 3 9 4006.464 0 0.000 1.000 0.000 0.000
  113. 1101 3 9 82.601 4.90918e-14 0.000 0.000 1.000 0.000
  114. 1110 3 9 1890.239 0 0.000 0.000 0.000 1.000
  115. best pat: 0000 0.0761955 - -
  116. best pat: 0001 0.000425224 chi(nested): 14.990 p-value for nested model: 0.000108108
  117. best pat: 0101 1.38287e-05 chi(nested): 10.155 p-value for nested model: 0.00143904
  118. best pat: 1101 4.90918e-14 chi(nested): 46.035 p-value for nested model: 1.16139e-11
  119.  
  120. coeffs: 0.136 0.025 0.722 0.116
  121.  
  122. ## dscore:: f_4(Base, Fit, Rbase, right2)
  123. ## genstat:: f_4(Base, Fit, right1, right2)
  124.  
  125. details: GanjDarehN Cpaleo -0.024573 -20.001214
  126. details: Tarim_EMBA1 Cpaleo -0.004264 -3.238531
  127. details: ONG.SG Cpaleo 0.001503 1.275257
  128. details: Dai.DG Cpaleo 0.010163 10.044655
  129. dscore: Cpaleo f4: -0.001192 Z: -1.231662
  130.  
  131. details: GanjDarehN WSHG 0.005177 4.154664
  132. details: Tarim_EMBA1 WSHG 0.077099 53.280253
  133. details: ONG.SG WSHG -0.005103 -4.692472
  134. details: Dai.DG WSHG 0.005042 4.992994
  135. dscore: WSHG f4: -0.000452 Z: -0.507549
  136.  
  137. details: GanjDarehN EHG 0.006369 5.342711
  138. details: Tarim_EMBA1 EHG 0.062859 44.925113
  139. details: ONG.SG EHG -0.005864 -5.548371
  140. details: Dai.DG EHG 0.000316 0.334150
  141. dscore: EHG f4: -0.001747 Z: -2.000008
  142.  
  143. details: GanjDarehN IG_Serbia 0.008313 8.151067
  144. details: Tarim_EMBA1 IG_Serbia 0.028661 24.985540
  145. details: ONG.SG IG_Serbia -0.004229 -4.468702
  146. details: Dai.DG IG_Serbia -0.001331 -1.545828
  147. dscore: IG_Serbia f4: -0.001353 Z: -1.738425
  148.  
  149. details: GanjDarehN PPN 0.018551 16.932520
  150. details: Tarim_EMBA1 PPN 0.013443 11.698587
  151. details: ONG.SG PPN -0.005821 -5.602571
  152. details: Dai.DG PPN -0.001799 -2.123952
  153. dscore: PPN f4: -0.001543 Z: -1.815031
  154.  
  155. details: GanjDarehN Shamanka_En -0.028621 -26.451869
  156. details: Tarim_EMBA1 Shamanka_En 0.007747 6.696751
  157. details: ONG.SG Shamanka_En -0.000747 -0.760478
  158. details: Dai.DG Shamanka_En 0.030818 33.810267
  159. dscore: Shamanka_En f4: -0.000662 Z: -0.814507
  160.  
  161. details: GanjDarehN CHG 0.026465 23.299848
  162. details: Tarim_EMBA1 CHG 0.019155 14.764276
  163. details: ONG.SG CHG -0.006055 -5.587741
  164. details: Dai.DG CHG -0.003016 -3.061147
  165. dscore: CHG f4: -0.000630 Z: -0.701527
  166.  
  167. details: GanjDarehN Turkey_N 0.018145 19.550089
  168. details: Tarim_EMBA1 Turkey_N 0.014863 14.803403
  169. details: ONG.SG Turkey_N -0.005151 -5.836628
  170. details: Dai.DG Turkey_N -0.002587 -3.391094
  171. dscore: Turkey_N f4: -0.001170 Z: -1.614735
  172.  
  173. details: GanjDarehN Chokhopani -0.033492 -25.264869
  174. details: Tarim_EMBA1 Chokhopani -0.006594 -4.516417
  175. details: ONG.SG Chokhopani -0.001484 -1.161187
  176. details: Dai.DG Chokhopani 0.030088 24.919788
  177. dscore: Chokhopani f4: -0.002304 Z: -2.195638
  178.  
  179. gendstat: Mbuti.DG Cpaleo -1.232
  180. gendstat: Mbuti.DG WSHG -0.508
  181. gendstat: Mbuti.DG EHG -2.000
  182. gendstat: Mbuti.DG IG_Serbia -1.738
  183. gendstat: Mbuti.DG PPN -1.815
  184. gendstat: Mbuti.DG Shamanka_En -0.815
  185. gendstat: Mbuti.DG CHG -0.702
  186. gendstat: Mbuti.DG Turkey_N -1.615
  187. gendstat: Mbuti.DG Chokhopani -2.196
  188. gendstat: Cpaleo WSHG 0.769
  189. gendstat: Cpaleo EHG -0.547
  190. gendstat: Cpaleo IG_Serbia -0.175
  191. gendstat: Cpaleo PPN -0.350
  192. gendstat: Cpaleo Shamanka_En 0.643
  193. gendstat: Cpaleo CHG 0.509
  194. gendstat: Cpaleo Turkey_N 0.023
  195. gendstat: Cpaleo Chokhopani -1.069
  196. gendstat: WSHG EHG -1.748
  197. gendstat: WSHG IG_Serbia -1.256
  198. gendstat: WSHG PPN -1.263
  199. gendstat: WSHG Shamanka_En -0.264
  200. gendstat: WSHG CHG -0.192
  201. gendstat: WSHG Turkey_N -0.946
  202. gendstat: WSHG Chokhopani -1.800
  203. gendstat: EHG IG_Serbia 0.642
  204. gendstat: EHG PPN 0.254
  205. gendstat: EHG Shamanka_En 1.353
  206. gendstat: EHG CHG 1.238
  207. gendstat: EHG Turkey_N 0.839
  208. gendstat: EHG Chokhopani -0.534
  209. gendstat: IG_Serbia PPN -0.276
  210. gendstat: IG_Serbia Shamanka_En 0.915
  211. gendstat: IG_Serbia CHG 0.882
  212. gendstat: IG_Serbia Turkey_N 0.347
  213. gendstat: IG_Serbia Chokhopani -0.969
  214. gendstat: PPN Shamanka_En 1.059
  215. gendstat: PPN CHG 1.091
  216. gendstat: PPN Turkey_N 0.660
  217. gendstat: PPN Chokhopani -0.737
  218. gendstat: Shamanka_En CHG 0.036
  219. gendstat: Shamanka_En Turkey_N -0.708
  220. gendstat: Shamanka_En Chokhopani -2.014
  221. gendstat: CHG Turkey_N -0.756
  222. gendstat: CHG Chokhopani -1.473
  223. gendstat: Turkey_N Chokhopani -1.178
  224.  
  225. removing /tmp/fsx.2599
  226. ##end of qpAdm: 18.069 seconds cpu 0.504 Mbytes in use
  227.  
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