Advertisement
Not a member of Pastebin yet?
Sign Up,
it unlocks many cool features!
- qpAdm: parameter file: parqpAdm
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- S1: ste4
- indivname: ste4.ind
- snpname: ste4.snp
- genotypename: ste4.geno
- popleft: left
- popright: right
- details: YES
- allsnps: YES
- inbreed: NO
- ## qpAdm version: 1520
- seed: 1913114290
- inbreed set NO
- inbreed set NO
- tmp: /tmp/fsx.10261
- left pops:
- Russia_Steppe_Eneolithic
- EHG
- CHG
- right pops:
- Mbuti.DG
- Morocco_Iberomaurusian
- GEO_Dzudzuana_UP
- Russia_MA1_HG.SG
- Italy_North_Villabruna_HG
- ONG.SG
- Turkey_Epipaleolithic
- Iran_GanjDareh_N
- Iran_ShahrISokhta_BA2
- codimension 1
- f4info:
- f4rank: 1 dof: 7 chisq: 36.856 tail: 4.99427049e-06 dofdiff: 9 chisqdiff: -36.856 taildiff: 1
- B:
- scale 1.000
- Morocco_Iberomaurusian 0.225
- GEO_Dzudzuana_UP 0.097
- Russia_MA1_HG.SG 2.056
- Italy_North_Villabruna_HG 1.725
- ONG.SG 0.414
- Turkey_Epipaleolithic 0.290
- Iran_GanjDareh_N -0.694
- Iran_ShahrISokhta_BA2 -0.031
- A:
- scale 107.795
- EHG 1.090
- CHG -0.901
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 36.856 taildiff: 4.99427049e-06
- B:
- scale 108.434 96.203
- Morocco_Iberomaurusian 0.191 -0.280
- GEO_Dzudzuana_UP 0.028 -0.192
- Russia_MA1_HG.SG 1.780 -2.206
- Italy_North_Villabruna_HG 1.816 -1.564
- ONG.SG 0.389 -0.414
- Turkey_Epipaleolithic 0.203 -0.425
- Iran_GanjDareh_N -1.066 0.181
- Iran_ShahrISokhta_BA2 -0.405 -0.430
- A:
- scale 1.414 1.414
- EHG 1.414 0.000
- CHG 0.000 1.414
- best coefficients: 0.453 0.547
- totmean: 0.453 0.547
- boot mean: 0.452 0.548
- std. errors: 0.024 0.024
- error covariance (* 1,000,000)
- 579 -579
- -579 579
- summ: Russia_Steppe_Eneolithic 2 0.000005 0.452 0.548 579 -579 579
- fixed pat wt dof chisq tail prob
- 00 0 7 36.856 4.99427e-06 0.453 0.547
- 01 1 8 477.946 0 1.000 0.000
- 10 1 8 274.454 0 0.000 1.000
- best pat: 00 4.99427e-06 - -
- best pat: 10 1.11351e-54 chi(nested): 237.598 p-value for nested model: 1.31348e-53
- coeffs: 0.453 0.547
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: EHG Morocco_Iberomaurusian 0.001758 1.796744
- details: CHG Morocco_Iberomaurusian -0.002915 -2.639814
- dscore: Morocco_Iberomaurusian f4: -0.000800 Z: -0.935875
- details: EHG GEO_Dzudzuana_UP 0.000261 0.151808
- details: CHG GEO_Dzudzuana_UP -0.001999 -0.996006
- dscore: GEO_Dzudzuana_UP f4: -0.000976 Z: -0.619681
- details: EHG Russia_MA1_HG.SG 0.016419 10.492506
- details: CHG Russia_MA1_HG.SG -0.022931 -13.171725
- dscore: Russia_MA1_HG.SG f4: -0.005119 Z: -3.829623
- details: EHG Italy_North_Villabruna_HG 0.016750 11.143171
- details: CHG Italy_North_Villabruna_HG -0.016262 -9.531119
- dscore: Italy_North_Villabruna_HG f4: -0.001319 Z: -1.006310
- details: EHG ONG.SG 0.003592 3.360501
- details: CHG ONG.SG -0.004305 -3.671417
- dscore: ONG.SG f4: -0.000730 Z: -0.805035
- details: EHG Turkey_Epipaleolithic 0.001869 1.388642
- details: CHG Turkey_Epipaleolithic -0.004418 -2.817380
- dscore: Turkey_Epipaleolithic f4: -0.001572 Z: -1.301721
- details: EHG Iran_GanjDareh_N -0.009835 -9.801017
- details: CHG Iran_GanjDareh_N 0.001882 1.682819
- dscore: Iran_GanjDareh_N f4: -0.003422 Z: -3.932644
- details: EHG Iran_ShahrISokhta_BA2 -0.003736 -3.924771
- details: CHG Iran_ShahrISokhta_BA2 -0.004475 -4.012170
- dscore: Iran_ShahrISokhta_BA2 f4: -0.004140 Z: -4.782261
- gendstat: Mbuti.DG Morocco_Iberomaurusian -0.936
- gendstat: Mbuti.DG GEO_Dzudzuana_UP -0.620
- gendstat: Mbuti.DG Russia_MA1_HG.SG -3.830
- gendstat: Mbuti.DG Italy_North_Villabruna_HG -1.006
- gendstat: Mbuti.DG ONG.SG -0.805
- gendstat: Mbuti.DG Turkey_Epipaleolithic -1.302
- gendstat: Mbuti.DG Iran_GanjDareh_N -3.933
- gendstat: Mbuti.DG Iran_ShahrISokhta_BA2 -4.782
- gendstat: Morocco_Iberomaurusian GEO_Dzudzuana_UP -0.111
- gendstat: Morocco_Iberomaurusian Russia_MA1_HG.SG -2.995
- gendstat: Morocco_Iberomaurusian Italy_North_Villabruna_HG -0.387
- gendstat: Morocco_Iberomaurusian ONG.SG 0.065
- gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -0.624
- gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -2.571
- gendstat: Morocco_Iberomaurusian Iran_ShahrISokhta_BA2 -3.325
- gendstat: GEO_Dzudzuana_UP Russia_MA1_HG.SG -2.209
- gendstat: GEO_Dzudzuana_UP Italy_North_Villabruna_HG -0.200
- gendstat: GEO_Dzudzuana_UP ONG.SG 0.155
- gendstat: GEO_Dzudzuana_UP Turkey_Epipaleolithic -0.355
- gendstat: GEO_Dzudzuana_UP Iran_GanjDareh_N -1.603
- gendstat: GEO_Dzudzuana_UP Iran_ShahrISokhta_BA2 -2.072
- gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG 2.363
- gendstat: Russia_MA1_HG.SG ONG.SG 3.246
- gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 2.228
- gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N 1.257
- gendstat: Russia_MA1_HG.SG Iran_ShahrISokhta_BA2 0.775
- gendstat: Italy_North_Villabruna_HG ONG.SG 0.437
- gendstat: Italy_North_Villabruna_HG Turkey_Epipaleolithic -0.170
- gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -1.545
- gendstat: Italy_North_Villabruna_HG Iran_ShahrISokhta_BA2 -2.149
- gendstat: ONG.SG Turkey_Epipaleolithic -0.673
- gendstat: ONG.SG Iran_GanjDareh_N -2.803
- gendstat: ONG.SG Iran_ShahrISokhta_BA2 -4.048
- gendstat: Turkey_Epipaleolithic Iran_GanjDareh_N -1.525
- gendstat: Turkey_Epipaleolithic Iran_ShahrISokhta_BA2 -2.156
- gendstat: Iran_GanjDareh_N Iran_ShahrISokhta_BA2 -0.930
- removing /tmp/fsx.10261
- ##end of qpAdm: 1.745 seconds cpu 0.279 Mbytes in use
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
