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- allsnps: YES
- ## qpAdm version: 810
- seed: 1829841579
- left pops:
- Steppe_Eneolithic
- Georgia_Kotias.SG
- Geoksyur_EN
- Russia_Khvalynsk_EN
- right pops:
- Sarazm_EN
- Mbuti.DG
- USA_WA_Kennewick.SG
- Morocco_Iberomaurusian
- Kazakhstan_Botai.SG
- Ganj_Dareh_N
- PPN
- Natufian
- Iberia_MN
- Russia_MA1.SG
- Georgia_Satsurblia.SG
- Kostenki14.SG
- EEHG
- WEHG
- WSHG
- Onge.DG
- Russia_Shamanka_EN.SG
- Ethiopia_4500BP.SG
- 0 Steppe_Eneolithic 3
- 1 Georgia_Kotias.SG 1
- 2 Geoksyur_EN 21
- 3 Russia_Khvalynsk_EN 3
- 4 Sarazm_EN 2
- 5 Mbuti.DG 5
- 6 USA_WA_Kennewick.SG 1
- 7 Morocco_Iberomaurusian 6
- 8 Kazakhstan_Botai.SG 3
- 9 Ganj_Dareh_N 7
- 10 PPN 8
- 11 Natufian 6
- 12 Iberia_MN 4
- 13 Russia_MA1.SG 1
- 14 Georgia_Satsurblia.SG 1
- 15 Kostenki14.SG 1
- 16 EEHG 4
- 17 WEHG 36
- 18 WSHG 3
- 19 Onge.DG 2
- 20 Russia_Shamanka_EN.SG 10
- 21 Ethiopia_4500BP.SG 1
- jackknife block size: 0.050
- snps: 1150535 indivs: 129
- number of blocks for block jackknife: 552
- ## ncols: 1150535
- coverage: Steppe_Eneolithic 1017729
- coverage: Georgia_Kotias.SG 1149097
- coverage: Geoksyur_EN 1018577
- coverage: Russia_Khvalynsk_EN 758497
- coverage: Sarazm_EN 867960
- coverage: Mbuti.DG 1150376
- coverage: USA_WA_Kennewick.SG 640773
- coverage: Morocco_Iberomaurusian 1101342
- coverage: Kazakhstan_Botai.SG 1149870
- coverage: Ganj_Dareh_N 1029695
- coverage: PPN 835499
- coverage: Natufian 535079
- coverage: Iberia_MN 967760
- coverage: Russia_MA1.SG 805960
- coverage: Georgia_Satsurblia.SG 801311
- coverage: Kostenki14.SG 1048972
- coverage: EEHG 1029995
- coverage: WEHG 1141246
- coverage: WSHG 858019
- coverage: Onge.DG 1120748
- coverage: Russia_Shamanka_EN.SG 1149998
- coverage: Ethiopia_4500BP.SG 1149598
- dof (jackknife): 466.203
- numsnps used: 1150535
- codimension 1
- f4info:
- f4rank: 2 dof: 15 chisq: 32.231 tail: 0.00598730211 dofdiff: 17 chisqdiff: -32.231 taildiff: 1
- B:
- scale 1.000 1.000
- Mbuti.DG 0.143 0.616
- USA_WA_Kennewick.SG 0.692 0.235
- Morocco_Iberomaurusian 0.369 0.560
- Kazakhstan_Botai.SG 1.740 -0.540
- Ganj_Dareh_N -0.386 -0.078
- PPN 0.121 0.243
- Natufian 0.161 0.224
- Iberia_MN 0.480 0.648
- Russia_MA1.SG 1.238 -0.187
- Georgia_Satsurblia.SG -0.125 3.655
- Kostenki14.SG 0.653 0.616
- EEHG 2.132 -0.347
- WEHG 1.582 0.266
- WSHG 1.785 -0.749
- Onge.DG 0.439 0.406
- Russia_Shamanka_EN.SG 0.685 0.544
- Ethiopia_4500BP.SG 0.210 0.664
- A:
- scale 373.365 1137.285
- Georgia_Kotias.SG -0.890 1.595
- Geoksyur_EN -1.264 -0.658
- Russia_Khvalynsk_EN 0.781 -0.157
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 15 chisqdiff: 32.231 taildiff: 0.00598730211
- B:
- scale 1.000 1.000 1.000
- Mbuti.DG 0.135 0.671 0.888
- USA_WA_Kennewick.SG 0.684 0.199 -0.929
- Morocco_Iberomaurusian 0.350 0.636 1.790
- Kazakhstan_Botai.SG 1.751 -0.662 0.029
- Ganj_Dareh_N -0.404 -0.010 1.804
- PPN 0.111 0.270 0.168
- Natufian 0.146 0.236 0.088
- Iberia_MN 0.467 0.623 0.211
- Russia_MA1.SG 1.232 -0.300 -1.538
- Georgia_Satsurblia.SG -0.160 3.591 -1.933
- Kostenki14.SG 0.653 0.567 -1.426
- EEHG 2.132 -0.463 0.502
- WEHG 1.580 0.175 -0.052
- WSHG 1.793 -0.856 -0.193
- Onge.DG 0.438 0.344 0.139
- Russia_Shamanka_EN.SG 0.675 0.513 0.508
- Ethiopia_4500BP.SG 0.191 0.698 0.319
- A:
- scale 381.345 1045.685 3881.194
- Georgia_Kotias.SG -0.804 1.664 0.887
- Geoksyur_EN -1.261 -0.463 0.784
- Russia_Khvalynsk_EN 0.874 0.125 1.264
- best coefficients: 0.161 0.250 0.588
- Jackknife mean: 0.160875438 0.250804029 0.588320533
- std. errors: 0.034 0.034 0.016
- error covariance (* 1000000)
- 1139 -1021 -118
- -1021 1173 -152
- -118 -152 270
- summ: Steppe_Eneolithic 3 0.005987 0.161 0.251 0.588 1139 -1021 -118 1173 -152 270
- fixed pat wt dof chisq tail prob
- 000 0 15 32.231 0.0059873 0.161 0.250 0.588
- 001 1 16 353.223 0 7.286 -6.286 0.000 infeasible
- 010 1 16 81.362 9.44595e-11 0.380 -0.000 0.620
- 100 1 16 59.731 5.80903e-07 0.000 0.388 0.612
- 011 2 17 707.611 0 1.000 -0.000 0.000
- 101 2 17 1214.203 0 0.000 1.000 0.000
- 110 2 17 478.812 0 0.000 -0.000 1.000
- best pat: 000 0.0059873 - -
- best pat: 100 5.80903e-07 chi(nested): 27.500 p-value for nested model: 1.5711e-07
- best pat: 110 5.46109e-91 chi(nested): 419.081 p-value for nested model: 3.87619e-93
- coeffs: 0.161 0.250 0.588
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Georgia_Kotias.SG Mbuti.DG 0.001210 3.036224
- details: Geoksyur_EN Mbuti.DG -0.000628 -2.404219
- details: Russia_Khvalynsk_EN Mbuti.DG 0.000795 2.607389
- dscore: Mbuti.DG f4: 0.000506 Z: 2.054997
- details: Georgia_Kotias.SG USA_WA_Kennewick.SG -0.001266 -3.579477
- details: Geoksyur_EN USA_WA_Kennewick.SG -0.002605 -9.913031
- details: Russia_Khvalynsk_EN USA_WA_Kennewick.SG 0.001373 4.871977
- dscore: USA_WA_Kennewick.SG f4: -0.000048 Z: -0.210314
- details: Georgia_Kotias.SG Morocco_Iberomaurusian 0.000886 2.048340
- details: Geoksyur_EN Morocco_Iberomaurusian -0.001069 -3.895325
- details: Russia_Khvalynsk_EN Morocco_Iberomaurusian 0.001587 5.272879
- dscore: Morocco_Iberomaurusian f4: 0.000809 Z: 3.322362
- details: Georgia_Kotias.SG Kazakhstan_Botai.SG -0.004643 -11.663021
- details: Geoksyur_EN Kazakhstan_Botai.SG -0.005588 -20.366924
- details: Russia_Khvalynsk_EN Kazakhstan_Botai.SG 0.003966 12.233470
- dscore: Kazakhstan_Botai.SG f4: 0.000187 Z: 0.725945
- details: Georgia_Kotias.SG Ganj_Dareh_N 0.001456 3.860261
- details: Geoksyur_EN Ganj_Dareh_N 0.001669 6.332537
- details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.000330 -1.215491
- dscore: Ganj_Dareh_N f4: 0.000459 Z: 2.042878
- details: Georgia_Kotias.SG PPN 0.000503 1.374073
- details: Geoksyur_EN PPN -0.000449 -1.701372
- details: Russia_Khvalynsk_EN PPN 0.000479 1.610912
- dscore: PPN f4: 0.000251 Z: 1.057450
- details: Georgia_Kotias.SG Natufian 0.000330 1.026443
- details: Geoksyur_EN Natufian -0.000529 -2.257116
- details: Russia_Khvalynsk_EN Natufian 0.000535 1.917563
- dscore: Natufian f4: 0.000236 Z: 1.084141
- details: Georgia_Kotias.SG Iberia_MN 0.000278 0.713643
- details: Geoksyur_EN Iberia_MN -0.001750 -6.552896
- details: Russia_Khvalynsk_EN Iberia_MN 0.001326 4.618661
- dscore: Iberia_MN f4: 0.000387 Z: 1.639111
- details: Georgia_Kotias.SG Russia_MA1.SG -0.003315 -8.075520
- details: Geoksyur_EN Russia_MA1.SG -0.004336 -14.696533
- details: Russia_Khvalynsk_EN Russia_MA1.SG 0.002228 6.888951
- dscore: Russia_MA1.SG f4: -0.000308 Z: -1.194877
- details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005762 11.643588
- details: Geoksyur_EN Georgia_Satsurblia.SG -0.001496 -4.865788
- details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.000599 -1.836492
- dscore: Georgia_Satsurblia.SG f4: 0.000203 Z: 0.755890
- details: Georgia_Kotias.SG Kostenki14.SG -0.000653 -1.360041
- details: Geoksyur_EN Kostenki14.SG -0.002807 -8.831529
- details: Russia_Khvalynsk_EN Kostenki14.SG 0.001147 3.246576
- dscore: Kostenki14.SG f4: -0.000133 Z: -0.456055
- details: Georgia_Kotias.SG EEHG -0.005088 -11.010647
- details: Geoksyur_EN EEHG -0.006832 -21.969369
- details: Russia_Khvalynsk_EN EEHG 0.005035 15.198247
- dscore: EEHG f4: 0.000433 Z: 1.568011
- details: Georgia_Kotias.SG WEHG -0.002887 -7.248769
- details: Geoksyur_EN WEHG -0.005334 -20.313010
- details: Russia_Khvalynsk_EN WEHG 0.003738 11.831192
- dscore: WEHG f4: 0.000399 Z: 1.608241
- details: Georgia_Kotias.SG WSHG -0.005086 -12.408850
- details: Geoksyur_EN WSHG -0.005641 -20.086478
- details: Russia_Khvalynsk_EN WSHG 0.003945 11.691613
- dscore: WSHG f4: 0.000090 Z: 0.333001
- details: Georgia_Kotias.SG Onge.DG -0.000125 -0.280591
- details: Geoksyur_EN Onge.DG -0.001585 -5.519210
- details: Russia_Khvalynsk_EN Onge.DG 0.001240 3.762057
- dscore: Onge.DG f4: 0.000313 Z: 1.153192
- details: Georgia_Kotias.SG Russia_Shamanka_EN.SG -0.000369 -0.963310
- details: Geoksyur_EN Russia_Shamanka_EN.SG -0.002423 -9.142259
- details: Russia_Khvalynsk_EN Russia_Shamanka_EN.SG 0.001828 5.959723
- dscore: Russia_Shamanka_EN.SG f4: 0.000410 Z: 1.668282
- details: Georgia_Kotias.SG Ethiopia_4500BP.SG 0.001064 2.398011
- details: Geoksyur_EN Ethiopia_4500BP.SG -0.000858 -2.983282
- details: Russia_Khvalynsk_EN Ethiopia_4500BP.SG 0.000793 2.499420
- dscore: Ethiopia_4500BP.SG f4: 0.000423 Z: 1.639115
- gendstat: Sarazm_EN Mbuti.DG 2.055
- gendstat: Sarazm_EN USA_WA_Kennewick.SG -0.210
- gendstat: Sarazm_EN Morocco_Iberomaurusian 3.322
- gendstat: Sarazm_EN Kazakhstan_Botai.SG 0.726
- gendstat: Sarazm_EN Ganj_Dareh_N 2.043
- gendstat: Sarazm_EN PPN 1.057
- gendstat: Sarazm_EN Natufian 1.084
- gendstat: Sarazm_EN Iberia_MN 1.639
- gendstat: Sarazm_EN Russia_MA1.SG -1.195
- gendstat: Sarazm_EN Georgia_Satsurblia.SG 0.756
- gendstat: Sarazm_EN Kostenki14.SG -0.456
- gendstat: Sarazm_EN EEHG 1.568
- gendstat: Sarazm_EN WEHG 1.608
- gendstat: Sarazm_EN WSHG 0.333
- gendstat: Sarazm_EN Onge.DG 1.153
- gendstat: Sarazm_EN Russia_Shamanka_EN.SG 1.668
- gendstat: Sarazm_EN Ethiopia_4500BP.SG 1.639
- gendstat: Mbuti.DG USA_WA_Kennewick.SG -2.306
- gendstat: Mbuti.DG Morocco_Iberomaurusian 1.433
- gendstat: Mbuti.DG Kazakhstan_Botai.SG -1.286
- gendstat: Mbuti.DG Ganj_Dareh_N -0.228
- gendstat: Mbuti.DG PPN -1.164
- gendstat: Mbuti.DG Natufian -1.149
- gendstat: Mbuti.DG Iberia_MN -0.544
- gendstat: Mbuti.DG Russia_MA1.SG -2.911
- gendstat: Mbuti.DG Georgia_Satsurblia.SG -1.203
- gendstat: Mbuti.DG Kostenki14.SG -2.413
- gendstat: Mbuti.DG EEHG -0.271
- gendstat: Mbuti.DG WEHG -0.491
- gendstat: Mbuti.DG WSHG -1.504
- gendstat: Mbuti.DG Onge.DG -0.832
- gendstat: Mbuti.DG Russia_Shamanka_EN.SG -0.472
- gendstat: Mbuti.DG Ethiopia_4500BP.SG -0.437
- gendstat: USA_WA_Kennewick.SG Morocco_Iberomaurusian 3.459
- gendstat: USA_WA_Kennewick.SG Kazakhstan_Botai.SG 1.030
- gendstat: USA_WA_Kennewick.SG Ganj_Dareh_N 2.093
- gendstat: USA_WA_Kennewick.SG PPN 1.196
- gendstat: USA_WA_Kennewick.SG Natufian 1.069
- gendstat: USA_WA_Kennewick.SG Iberia_MN 1.701
- gendstat: USA_WA_Kennewick.SG Russia_MA1.SG -0.996
- gendstat: USA_WA_Kennewick.SG Georgia_Satsurblia.SG 0.878
- gendstat: USA_WA_Kennewick.SG Kostenki14.SG -0.306
- gendstat: USA_WA_Kennewick.SG EEHG 1.819
- gendstat: USA_WA_Kennewick.SG WEHG 1.837
- gendstat: USA_WA_Kennewick.SG WSHG 0.527
- gendstat: USA_WA_Kennewick.SG Onge.DG 1.351
- gendstat: USA_WA_Kennewick.SG Russia_Shamanka_EN.SG 2.208
- gendstat: USA_WA_Kennewick.SG Ethiopia_4500BP.SG 1.767
- gendstat: Morocco_Iberomaurusian Kazakhstan_Botai.SG -2.412
- gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -1.537
- gendstat: Morocco_Iberomaurusian PPN -2.597
- gendstat: Morocco_Iberomaurusian Natufian -2.475
- gendstat: Morocco_Iberomaurusian Iberia_MN -1.913
- gendstat: Morocco_Iberomaurusian Russia_MA1.SG -3.871
- gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG -2.177
- gendstat: Morocco_Iberomaurusian Kostenki14.SG -3.452
- gendstat: Morocco_Iberomaurusian EEHG -1.316
- gendstat: Morocco_Iberomaurusian WEHG -1.824
- gendstat: Morocco_Iberomaurusian WSHG -2.570
- gendstat: Morocco_Iberomaurusian Onge.DG -1.993
- gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG -1.892
- gendstat: Morocco_Iberomaurusian Ethiopia_4500BP.SG -1.634
- gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 1.092
- gendstat: Kazakhstan_Botai.SG PPN 0.254
- gendstat: Kazakhstan_Botai.SG Natufian 0.179
- gendstat: Kazakhstan_Botai.SG Iberia_MN 0.816
- gendstat: Kazakhstan_Botai.SG Russia_MA1.SG -2.009
- gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 0.056
- gendstat: Kazakhstan_Botai.SG Kostenki14.SG -1.162
- gendstat: Kazakhstan_Botai.SG EEHG 1.087
- gendstat: Kazakhstan_Botai.SG WEHG 0.969
- gendstat: Kazakhstan_Botai.SG WSHG -0.487
- gendstat: Kazakhstan_Botai.SG Onge.DG 0.481
- gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 1.096
- gendstat: Kazakhstan_Botai.SG Ethiopia_4500BP.SG 0.814
- gendstat: Ganj_Dareh_N PPN -0.948
- gendstat: Ganj_Dareh_N Natufian -0.947
- gendstat: Ganj_Dareh_N Iberia_MN -0.317
- gendstat: Ganj_Dareh_N Russia_MA1.SG -2.794
- gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -1.028
- gendstat: Ganj_Dareh_N Kostenki14.SG -2.282
- gendstat: Ganj_Dareh_N EEHG -0.094
- gendstat: Ganj_Dareh_N WEHG -0.255
- gendstat: Ganj_Dareh_N WSHG -1.335
- gendstat: Ganj_Dareh_N Onge.DG -0.622
- gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.225
- gendstat: Ganj_Dareh_N Ethiopia_4500BP.SG -0.142
- gendstat: PPN Natufian -0.067
- gendstat: PPN Iberia_MN 0.673
- gendstat: PPN Russia_MA1.SG -1.989
- gendstat: PPN Georgia_Satsurblia.SG -0.180
- gendstat: PPN Kostenki14.SG -1.476
- gendstat: PPN EEHG 0.701
- gendstat: PPN WEHG 0.739
- gendstat: PPN WSHG -0.586
- gendstat: PPN Onge.DG 0.257
- gendstat: PPN Russia_Shamanka_EN.SG 0.723
- gendstat: PPN Ethiopia_4500BP.SG 0.713
- gendstat: Natufian Iberia_MN 0.665
- gendstat: Natufian Russia_MA1.SG -1.841
- gendstat: Natufian Georgia_Satsurblia.SG -0.116
- gendstat: Natufian Kostenki14.SG -1.305
- gendstat: Natufian EEHG 0.677
- gendstat: Natufian WEHG 0.687
- gendstat: Natufian WSHG -0.492
- gendstat: Natufian Onge.DG 0.297
- gendstat: Natufian Russia_Shamanka_EN.SG 0.730
- gendstat: Natufian Ethiopia_4500BP.SG 0.716
- gendstat: Iberia_MN Russia_MA1.SG -2.484
- gendstat: Iberia_MN Georgia_Satsurblia.SG -0.687
- gendstat: Iberia_MN Kostenki14.SG -2.020
- gendstat: Iberia_MN EEHG 0.167
- gendstat: Iberia_MN WEHG 0.065
- gendstat: Iberia_MN WSHG -1.112
- gendstat: Iberia_MN Onge.DG -0.291
- gendstat: Iberia_MN Russia_Shamanka_EN.SG 0.103
- gendstat: Iberia_MN Ethiopia_4500BP.SG 0.150
- gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 1.642
- gendstat: Russia_MA1.SG Kostenki14.SG 0.572
- gendstat: Russia_MA1.SG EEHG 2.789
- gendstat: Russia_MA1.SG WEHG 2.716
- gendstat: Russia_MA1.SG WSHG 1.529
- gendstat: Russia_MA1.SG Onge.DG 2.123
- gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 2.789
- gendstat: Russia_MA1.SG Ethiopia_4500BP.SG 2.440
- gendstat: Georgia_Satsurblia.SG Kostenki14.SG -1.084
- gendstat: Georgia_Satsurblia.SG EEHG 0.729
- gendstat: Georgia_Satsurblia.SG WEHG 0.732
- gendstat: Georgia_Satsurblia.SG WSHG -0.367
- gendstat: Georgia_Satsurblia.SG Onge.DG 0.379
- gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 0.780
- gendstat: Georgia_Satsurblia.SG Ethiopia_4500BP.SG 0.779
- gendstat: Kostenki14.SG EEHG 1.836
- gendstat: Kostenki14.SG WEHG 2.228
- gendstat: Kostenki14.SG WSHG 0.748
- gendstat: Kostenki14.SG Onge.DG 1.631
- gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 2.282
- gendstat: Kostenki14.SG Ethiopia_4500BP.SG 1.913
- gendstat: EEHG WEHG -0.148
- gendstat: EEHG WSHG -1.365
- gendstat: EEHG Onge.DG -0.403
- gendstat: EEHG Russia_Shamanka_EN.SG -0.091
- gendstat: EEHG Ethiopia_4500BP.SG -0.032
- gendstat: WEHG WSHG -1.264
- gendstat: WEHG Onge.DG -0.349
- gendstat: WEHG Russia_Shamanka_EN.SG 0.051
- gendstat: WEHG Ethiopia_4500BP.SG 0.097
- gendstat: WSHG Onge.DG 0.771
- gendstat: WSHG Russia_Shamanka_EN.SG 1.319
- gendstat: WSHG Ethiopia_4500BP.SG 1.111
- gendstat: Onge.DG Russia_Shamanka_EN.SG 0.496
- gendstat: Onge.DG Ethiopia_4500BP.SG 0.424
- gendstat: Russia_Shamanka_EN.SG Ethiopia_4500BP.SG 0.056
- ## end of run
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