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Jan 16th, 2019
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  1. print("N4 bias correction runs.")
  2. inputImage =sitk.ReadImage("C/Users/LENOVO/Desktop/Brats18_2013_1_1_t1.nii")
  3. maskImage = sitk.OtsuThreshold(inputImage,0,1,200)
  4. sitk.WriteImage(maskImage,"C/Users/LENOVO/Desktop/Brats18_2013_1_1_t1_Mask.nii")
  5. inputImage = sitk.Cast(inputImage,sitk.sitkFloat32)
  6.  
  7. corrector = sitk.N4BiasFieldCorrectionImageFilter();
  8.  
  9. output = corrector.Execute(inputImage,maskImage)
  10. sitk.WriteImage(output,"C/Users/LENOVO/Desktop/Brats18_2013_1_1_t1_Mask.nii")
  11. print("Finished N4 Bias Field Correction.....")
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