Session info

> sessionInfo()
R version 4.1.0 (2021-05-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.2 LTS
Matrix products: default
BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=C              LC_PAPER=en_US.UTF-8
 [8] LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base
other attached packages:
 [1] TopmedPipeline_2.10.0 RColorBrewer_1.1-2    GGally_2.1.2          SNPRelate_1.26.0      GENESIS_2.22.2        Biobase_2.52.0        BiocGenerics_0.38.0   ggplot2_3.3.5         dplyr_1.0.7
[10] SeqVarTools_1.30.0    SeqArray_1.32.0       gdsfmt_1.28.0
loaded via a namespace (and not attached):
 [1] nlme_3.1-152           bitops_1.0-7           matrixStats_0.59.0     bit64_4.0.5            GenomeInfoDb_1.28.1    tools_4.1.0            backports_1.2.1        utf8_1.2.1
 [9] R6_2.5.0               DBI_1.1.1              lazyeval_0.2.2         mgcv_1.8-36            colorspace_2.0-2       DNAcopy_1.66.0         withr_2.4.2            tidyselect_1.1.1
[17] bit_4.0.4              compiler_4.1.0         cli_3.0.0              quantreg_5.86          mice_3.13.0            SparseM_1.81           sandwich_3.0-1         labeling_0.4.2
[25] scales_1.1.1           hexbin_1.28.2          lmtest_0.9-38          quantsmooth_1.58.0     stringr_1.4.0          digest_0.6.27          GWASExactHW_1.01       rmarkdown_2.9
[33] XVector_0.32.0         htmltools_0.5.1.1      pkgconfig_2.0.3        sessioninfo_1.1.1      fastmap_1.1.0          rlang_0.4.11           rstudioapi_0.13        RSQLite_2.2.7
[41] generics_0.1.0         farver_2.1.0           zoo_1.8-9              RCurl_1.98-1.3         magrittr_2.0.1         GenomeInfoDbData_1.2.6 Matrix_1.3-4           Rcpp_1.0.7
[49] munsell_0.5.0          S4Vectors_0.30.0       fansi_0.5.0            lifecycle_1.0.0        stringi_1.7.3          CompQuadForm_1.4.3     GWASTools_1.38.0       zlibbioc_1.38.0
[57] plyr_1.8.6             grid_4.1.0             formula.tools_1.7.1    blob_1.2.1             crayon_1.4.1           lattice_0.20-44        Biostrings_2.60.1      splines_4.1.0
[65] knitr_1.33             pillar_1.6.1           igraph_1.2.6           GenomicRanges_1.44.0   logistf_1.24           reshape2_1.4.4         codetools_0.2-18       stats4_4.1.0
[73] glue_1.4.2             evaluate_0.14          mitools_2.4            data.table_1.14.0      operator.tools_1.6.3   vctrs_0.3.8            foreach_1.5.1          MatrixModels_0.5-0
[81] gtable_0.3.0           purrr_0.3.4            tidyr_1.1.3            reshape_0.8.8          assertthat_0.2.1       cachem_1.0.5           xfun_0.24              broom_0.7.8
[89] survey_4.0             survival_3.2-11        tibble_3.1.2           conquer_1.0.2          iterators_1.0.13       memoise_2.0.0          IRanges_2.26.0         ellipsis_0.3.2