API tools faq
paste
misnomer001

eehg+chg+parkhai 14 OG

misnomer001
Dec 29th, 2019
68
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 13.91 KB | None | 0 0
raw download clone embed print report
  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1753160765
  4.  
  5. left pops:
  6. Steppe_Eneolithic
  7. EEHG
  8. CHG
  9. Parkhai_EN
  10.  
  11. right pops:
  12. Mbuti.DG
  13. Ust_Ishim.DG
  14. Kostenki14.SG
  15. Russia_MA1.SG
  16. Han.DG
  17. Onge.DG
  18. Papuan.DG
  19. Italy_Villabruna
  20. Czech_Vestonice16
  21. Karitiana.DG
  22. Iberia_ElMiron
  23. Ethiopia_4500BP.SG
  24. Natufian
  25. Ganj_Dareh_N
  26.  
  27. 0 Steppe_Eneolithic 3
  28. 1 EEHG 3
  29. 2 CHG 2
  30. 3 Parkhai_EN 4
  31. 4 Mbuti.DG 5
  32. 5 Ust_Ishim.DG 1
  33. 6 Kostenki14.SG 1
  34. 7 Russia_MA1.SG 1
  35. 8 Han.DG 4
  36. 9 Onge.DG 2
  37. 10 Papuan.DG 15
  38. 11 Italy_Villabruna 1
  39. 12 Czech_Vestonice16 1
  40. 13 Karitiana.DG 4
  41. 14 Iberia_ElMiron 1
  42. 15 Ethiopia_4500BP.SG 1
  43. 16 Natufian 6
  44. 17 Ganj_Dareh_N 7
  45. jackknife block size: 0.050
  46. snps: 1150542 indivs: 62
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150542
  49. coverage: Steppe_Eneolithic 1017729
  50. coverage: EEHG 1027057
  51. coverage: CHG 1149558
  52. coverage: Parkhai_EN 995807
  53. coverage: Mbuti.DG 1150376
  54. coverage: Ust_Ishim.DG 1062044
  55. coverage: Kostenki14.SG 1048972
  56. coverage: Russia_MA1.SG 805960
  57. coverage: Han.DG 1150414
  58. coverage: Onge.DG 1120748
  59. coverage: Papuan.DG 1121459
  60. coverage: Italy_Villabruna 883779
  61. coverage: Czech_Vestonice16 732091
  62. coverage: Karitiana.DG 1150373
  63. coverage: Iberia_ElMiron 626974
  64. coverage: Ethiopia_4500BP.SG 1149598
  65. coverage: Natufian 535079
  66. coverage: Ganj_Dareh_N 1029695
  67. dof (jackknife): 466.697
  68. numsnps used: 1150542
  69. codimension 1
  70. f4info:
  71. f4rank: 2 dof: 11 chisq: 15.359 tail: 0.166655719 dofdiff: 13 chisqdiff: -15.359 taildiff: 1
  72. B:
  73. scale 1.000 1.000
  74. Ust_Ishim.DG 0.341 -0.295
  75. Kostenki14.SG 0.863 -0.624
  76. Russia_MA1.SG 1.719 0.263
  77. Han.DG 0.678 -0.287
  78. Onge.DG 0.483 0.208
  79. Papuan.DG 0.472 0.324
  80. Italy_Villabruna 1.718 -0.990
  81. Czech_Vestonice16 0.906 -0.057
  82. Karitiana.DG 1.606 -0.418
  83. Iberia_ElMiron 1.096 -0.496
  84. Ethiopia_4500BP.SG -0.009 0.167
  85. Natufian 0.079 0.343
  86. Ganj_Dareh_N -0.840 3.267
  87. A:
  88. scale 381.720 2373.731
  89. EEHG 0.894 -0.535
  90. CHG -1.059 -1.588
  91. Parkhai_EN -1.039 0.438
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 15.359 taildiff: 0.166655719
  97. B:
  98. scale 1.000 1.000 1.000
  99. Ust_Ishim.DG 0.353 -0.167 1.623
  100. Kostenki14.SG 0.862 -0.593 0.724
  101. Russia_MA1.SG 1.710 0.347 0.521
  102. Han.DG 0.682 -0.273 0.449
  103. Onge.DG 0.480 0.205 -0.043
  104. Papuan.DG 0.456 0.391 0.670
  105. Italy_Villabruna 1.723 -1.018 -0.407
  106. Czech_Vestonice16 0.911 -0.132 -1.819
  107. Karitiana.DG 1.608 -0.464 -1.169
  108. Iberia_ElMiron 1.103 -0.376 1.119
  109. Ethiopia_4500BP.SG -0.011 0.192 0.540
  110. Natufian 0.082 0.409 0.778
  111. Ganj_Dareh_N -0.835 3.258 -1.389
  112. A:
  113. scale 377.431 2103.676 5189.777
  114. EEHG 0.839 -0.814 -1.297
  115. CHG -1.069 -1.527 -0.379
  116. Parkhai_EN -1.074 0.082 -1.084
  117.  
  118.  
  119. best coefficients: 0.537 -0.042 0.505
  120. Jackknife mean: 0.536954624 -0.037140170 0.500185546
  121. std. errors: 0.031 0.157 0.132
  122.  
  123. error covariance (* 1000000)
  124. 946 -4003 3057
  125. -4003 24500 -20498
  126. 3057 -20498 17441
  127.  
  128.  
  129. summ: Steppe_Eneolithic 3 0.166656 0.537 -0.037 0.500 946 -4003 3057 24500 -20498 17441
  130.  
  131. fixed pat wt dof chisq tail prob
  132. 000 0 11 15.359 0.166656 0.537 -0.042 0.505 infeasible
  133. 001 1 12 36.490 0.00027014 0.443 0.557 -0.000
  134. 010 1 12 15.747 0.203091 0.530 -0.000 0.470
  135. 100 1 12 63.113 6.07491e-09 0.000 3.294 -2.294 infeasible
  136. 011 2 13 519.871 0 1.000 -0.000 -0.000
  137. 101 2 13 312.466 0 0.000 1.000 -0.000
  138. 110 2 13 725.904 0 0.000 -0.000 1.000
  139. best pat: 000 0.166656 - -
  140. best pat: 010 0.203091 chi(nested): 0.388 p-value for nested model: 0.53311
  141. best pat: 101 5.90032e-59 not nested
  142.  
  143. coeffs: 0.537 -0.042 0.505
  144.  
  145. ## dscore:: f_4(Base, Fit, Rbase, right2)
  146. ## genstat:: f_4(Base, Fit, right1, right2)
  147.  
  148. details: EEHG Ust_Ishim.DG 0.000365 1.001541
  149. details: CHG Ust_Ishim.DG -0.001060 -2.777587
  150. details: Parkhai_EN Ust_Ishim.DG -0.001483 -4.207649
  151. dscore: Ust_Ishim.DG f4: -0.000508 Z: -1.676838
  152.  
  153. details: EEHG Kostenki14.SG 0.001894 4.663365
  154. details: CHG Kostenki14.SG -0.002070 -5.012413
  155. details: Parkhai_EN Kostenki14.SG -0.002693 -7.633705
  156. dscore: Kostenki14.SG f4: -0.000255 Z: -0.839697
  157.  
  158. details: EEHG Russia_MA1.SG 0.003557 9.068134
  159. details: CHG Russia_MA1.SG -0.005162 -12.286346
  160. details: Parkhai_EN Russia_MA1.SG -0.004975 -14.518495
  161. dscore: Russia_MA1.SG f4: -0.000384 Z: -1.262520
  162.  
  163. details: EEHG Han.DG 0.001524 5.098754
  164. details: CHG Han.DG -0.001794 -5.612602
  165. details: Parkhai_EN Han.DG -0.002073 -7.686303
  166. dscore: Han.DG f4: -0.000152 Z: -0.635642
  167.  
  168. details: EEHG Onge.DG 0.000956 2.809558
  169. details: CHG Onge.DG -0.001544 -4.371009
  170. details: Parkhai_EN Onge.DG -0.001390 -4.591291
  171. dscore: Onge.DG f4: -0.000123 Z: -0.453892
  172.  
  173. details: EEHG Papuan.DG 0.000685 2.124124
  174. details: CHG Papuan.DG -0.001638 -4.928303
  175. details: Parkhai_EN Papuan.DG -0.001449 -5.409205
  176. dscore: Papuan.DG f4: -0.000295 Z: -1.208282
  177.  
  178. details: EEHG Italy_Villabruna 0.004317 10.537143
  179. details: CHG Italy_Villabruna -0.004139 -10.043294
  180. details: Parkhai_EN Italy_Villabruna -0.004910 -14.934698
  181. dscore: Italy_Villabruna f4: 0.000014 Z: 0.047337
  182.  
  183. details: EEHG Czech_Vestonice16 0.002535 7.103688
  184. details: CHG Czech_Vestonice16 -0.002354 -6.451546
  185. details: Parkhai_EN Czech_Vestonice16 -0.002237 -6.870793
  186. dscore: Czech_Vestonice16 f4: 0.000331 Z: 1.187257
  187.  
  188. details: EEHG Karitiana.DG 0.004037 10.837047
  189. details: CHG Karitiana.DG -0.004185 -11.415148
  190. details: Parkhai_EN Karitiana.DG -0.004411 -13.552828
  191. dscore: Karitiana.DG f4: 0.000118 Z: 0.405138
  192.  
  193. details: EEHG Iberia_ElMiron 0.002302 7.325544
  194. details: CHG Iberia_ElMiron -0.002968 -8.809561
  195. details: Parkhai_EN Iberia_ElMiron -0.003427 -11.739980
  196. dscore: Iberia_ElMiron f4: -0.000368 Z: -1.492109
  197.  
  198. details: EEHG Ethiopia_4500BP.SG -0.000216 -0.837644
  199. details: CHG Ethiopia_4500BP.SG -0.000155 -0.544257
  200. details: Parkhai_EN Ethiopia_4500BP.SG -0.000088 -0.370688
  201. dscore: Ethiopia_4500BP.SG f4: -0.000154 Z: -0.729196
  202.  
  203. details: EEHG Natufian -0.000169 -0.635951
  204. details: CHG Natufian -0.000615 -2.472270
  205. details: Parkhai_EN Natufian -0.000392 -1.685850
  206. dscore: Natufian f4: -0.000263 Z: -1.280878
  207.  
  208. details: EEHG Ganj_Dareh_N -0.002792 -8.878508
  209. details: CHG Ganj_Dareh_N 0.000071 0.216198
  210. details: Parkhai_EN Ganj_Dareh_N 0.002753 9.240805
  211. dscore: Ganj_Dareh_N f4: -0.000113 Z: -0.448465
  212.  
  213. gendstat: Mbuti.DG Ust_Ishim.DG -1.677
  214. gendstat: Mbuti.DG Kostenki14.SG -0.840
  215. gendstat: Mbuti.DG Russia_MA1.SG -1.263
  216. gendstat: Mbuti.DG Han.DG -0.636
  217. gendstat: Mbuti.DG Onge.DG -0.454
  218. gendstat: Mbuti.DG Papuan.DG -1.208
  219. gendstat: Mbuti.DG Italy_Villabruna 0.047
  220. gendstat: Mbuti.DG Czech_Vestonice16 1.187
  221. gendstat: Mbuti.DG Karitiana.DG 0.405
  222. gendstat: Mbuti.DG Iberia_ElMiron -1.492
  223. gendstat: Mbuti.DG Ethiopia_4500BP.SG -0.729
  224. gendstat: Mbuti.DG Natufian -1.281
  225. gendstat: Mbuti.DG Ganj_Dareh_N -0.448
  226. gendstat: Ust_Ishim.DG Kostenki14.SG 0.670
  227. gendstat: Ust_Ishim.DG Russia_MA1.SG 0.316
  228. gendstat: Ust_Ishim.DG Han.DG 1.149
  229. gendstat: Ust_Ishim.DG Onge.DG 1.182
  230. gendstat: Ust_Ishim.DG Papuan.DG 0.682
  231. gendstat: Ust_Ishim.DG Italy_Villabruna 1.430
  232. gendstat: Ust_Ishim.DG Czech_Vestonice16 2.284
  233. gendstat: Ust_Ishim.DG Karitiana.DG 1.765
  234. gendstat: Ust_Ishim.DG Iberia_ElMiron 0.416
  235. gendstat: Ust_Ishim.DG Ethiopia_4500BP.SG 1.025
  236. gendstat: Ust_Ishim.DG Natufian 0.741
  237. gendstat: Ust_Ishim.DG Ganj_Dareh_N 1.197
  238. gendstat: Kostenki14.SG Russia_MA1.SG -0.350
  239. gendstat: Kostenki14.SG Han.DG 0.330
  240. gendstat: Kostenki14.SG Onge.DG 0.388
  241. gendstat: Kostenki14.SG Papuan.DG -0.124
  242. gendstat: Kostenki14.SG Italy_Villabruna 0.734
  243. gendstat: Kostenki14.SG Czech_Vestonice16 1.646
  244. gendstat: Kostenki14.SG Karitiana.DG 1.059
  245. gendstat: Kostenki14.SG Iberia_ElMiron -0.338
  246. gendstat: Kostenki14.SG Ethiopia_4500BP.SG 0.298
  247. gendstat: Kostenki14.SG Natufian -0.024
  248. gendstat: Kostenki14.SG Ganj_Dareh_N 0.415
  249. gendstat: Russia_MA1.SG Han.DG 0.748
  250. gendstat: Russia_MA1.SG Onge.DG 0.776
  251. gendstat: Russia_MA1.SG Papuan.DG 0.271
  252. gendstat: Russia_MA1.SG Italy_Villabruna 1.080
  253. gendstat: Russia_MA1.SG Czech_Vestonice16 2.075
  254. gendstat: Russia_MA1.SG Karitiana.DG 1.549
  255. gendstat: Russia_MA1.SG Iberia_ElMiron 0.044
  256. gendstat: Russia_MA1.SG Ethiopia_4500BP.SG 0.660
  257. gendstat: Russia_MA1.SG Natufian 0.363
  258. gendstat: Russia_MA1.SG Ganj_Dareh_N 0.812
  259. gendstat: Han.DG Onge.DG 0.119
  260. gendstat: Han.DG Papuan.DG -0.613
  261. gendstat: Han.DG Italy_Villabruna 0.506
  262. gendstat: Han.DG Czech_Vestonice16 1.584
  263. gendstat: Han.DG Karitiana.DG 1.114
  264. gendstat: Han.DG Iberia_ElMiron -0.725
  265. gendstat: Han.DG Ethiopia_4500BP.SG -0.006
  266. gendstat: Han.DG Natufian -0.408
  267. gendstat: Han.DG Ganj_Dareh_N 0.145
  268. gendstat: Onge.DG Papuan.DG -0.677
  269. gendstat: Onge.DG Italy_Villabruna 0.393
  270. gendstat: Onge.DG Czech_Vestonice16 1.408
  271. gendstat: Onge.DG Karitiana.DG 0.809
  272. gendstat: Onge.DG Iberia_ElMiron -0.783
  273. gendstat: Onge.DG Ethiopia_4500BP.SG -0.101
  274. gendstat: Onge.DG Natufian -0.477
  275. gendstat: Onge.DG Ganj_Dareh_N 0.034
  276. gendstat: Papuan.DG Italy_Villabruna 0.908
  277. gendstat: Papuan.DG Czech_Vestonice16 1.991
  278. gendstat: Papuan.DG Karitiana.DG 1.446
  279. gendstat: Papuan.DG Iberia_ElMiron -0.253
  280. gendstat: Papuan.DG Ethiopia_4500BP.SG 0.475
  281. gendstat: Papuan.DG Natufian 0.118
  282. gendstat: Papuan.DG Ganj_Dareh_N 0.647
  283. gendstat: Italy_Villabruna Czech_Vestonice16 0.889
  284. gendstat: Italy_Villabruna Karitiana.DG 0.283
  285. gendstat: Italy_Villabruna Iberia_ElMiron -1.168
  286. gendstat: Italy_Villabruna Ethiopia_4500BP.SG -0.483
  287. gendstat: Italy_Villabruna Natufian -0.862
  288. gendstat: Italy_Villabruna Ganj_Dareh_N -0.367
  289. gendstat: Czech_Vestonice16 Karitiana.DG -0.611
  290. gendstat: Czech_Vestonice16 Iberia_ElMiron -2.341
  291. gendstat: Czech_Vestonice16 Ethiopia_4500BP.SG -1.501
  292. gendstat: Czech_Vestonice16 Natufian -1.995
  293. gendstat: Czech_Vestonice16 Ganj_Dareh_N -1.320
  294. gendstat: Karitiana.DG Iberia_ElMiron -1.458
  295. gendstat: Karitiana.DG Ethiopia_4500BP.SG -0.834
  296. gendstat: Karitiana.DG Natufian -1.184
  297. gendstat: Karitiana.DG Ganj_Dareh_N -0.736
  298. gendstat: Iberia_ElMiron Ethiopia_4500BP.SG 0.710
  299. gendstat: Iberia_ElMiron Natufian 0.376
  300. gendstat: Iberia_ElMiron Ganj_Dareh_N 0.794
  301. gendstat: Ethiopia_4500BP.SG Natufian -0.400
  302. gendstat: Ethiopia_4500BP.SG Ganj_Dareh_N 0.140
  303. gendstat: Natufian Ganj_Dareh_N 0.529
  304.  
  305. ## end of run
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!