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fisheye error

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Jan 24th, 2012
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  1. script:
  2.  
  3. from yt.mods import *
  4.  
  5. pf = load('DD0018/output_0018')
  6.  
  7. N = 512 # Pixels (1024^2)
  8.  
  9. v, c = pf.h.find_max("Density")
  10. radius = 150/pf['kpc']
  11.  
  12.  
  13. #c = (pf.domain_right_edge + pf.domain_left_edge)/2. # Center
  14. #radius = (pf.domain_right_edge - pf.domain_left_edge)/2.
  15.  
  16. fov = 180.0
  17.  
  18. field='Density'
  19. mi,ma = pf.h.all_data().quantities['Extrema']('Density')[0]
  20. mi,ma = na.log10(mi), na.log10(ma)
  21.  
  22. # You may want to comment out the above lines and manually set the min and max
  23. # of the log of the Density field. For example:
  24. # mi,ma = -30.5,-26.5
  25.  
  26. # Another good place to center the camera is close to the maximum density.
  27. # v,c = pf.h.find_max('Density')
  28. # c -= 0.1*radius
  29.  
  30.  
  31. # Construct transfer function
  32. tf = ColorTransferFunction((mi-1, ma+1),nbins=1024)
  33.  
  34. # Sample transfer function with Nc gaussians. Use col_bounds keyword to limit
  35. # the color range to the min and max values, rather than the transfer function
  36. # bounds.
  37. Nc = 5
  38. tf.add_layers(Nc,w=0.005, col_bounds = (mi,ma), alpha=na.logspace(-2,0,Nc),
  39. colormap='RdBu_r')
  40.  
  41. # Create the camera object. Use the keyword: no_ghost=True if a lot of time is
  42. # spent creating vertex-centered data. In this case I'm running with 8
  43. # processors, and am splitting the image plane into 4 pieces and using 2
  44. # processors on each piece.
  45. cam = MosaicFisheyeCamera(c, radius, fov, N,
  46. transfer_function = tf,
  47. sub_samples = 5,
  48. pf=pf,
  49. nimx=2,nimy=2,procs_per_wg=4)
  50.  
  51. # Take a snapshot
  52. im = cam.snapshot()
  53.  
  54. # Save the image
  55. cam.save_image('fisheye_mosaic.png')
  56.  
  57.  
  58. error:
  59.  
  60. P001 yt : [INFO ] 2012-01-24 12:29:47,562 Starting 'Ray casting'
  61. P013 yt : [INFO ] 2012-01-24 12:29:47,569 Rendering fisheye of 512^2
  62. P013 yt : [INFO ] 2012-01-24 12:29:47,570 Starting 'Ray casting'
  63. mpispawn.c:303 Unexpected exit status
  64. Traceback (most recent call last):
  65. Traceback (most recent call last):
  66. File "fisheye_example.py", line 50, in <module>
  67. File "fisheye_example.py", line 50, in <module>
  68. Traceback (most recent call last):
  69. File "fisheye_example.py", line 50, in <module>
  70. Traceback (most recent call last):
  71. File "fisheye_example.py", line 50, in <module>
  72. Traceback (most recent call last):
  73. File "fisheye_example.py", line 50, in <module>
  74. im = cam.snapshot()
  75. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1095, in snapshot
  76. im = cam.snapshot()
  77. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1102, in snapshot
  78. im = cam.snapshot()
  79. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1095, in snapshot
  80. im = cam.snapshot()
  81. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1095, in snapshot
  82. im = cam.snapshot()
  83. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1095, in snapshot
  84. self.volume.initialize_source()
  85. brick.cast_plane(tfp, vector_plane)
  86. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/utilities/amr_kdtree/amr_kdtree.py", line 668, in initialize_source
  87. KeyboardInterrupt
  88. self.volume.initialize_source()
  89. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/utilities/amr_kdtree/amr_kdtree.py", line 668, in initialize_source
  90. Traceback (most recent call last):
  91. File "fisheye_example.py", line 50, in <module>
  92. self.volume.initialize_source()
  93. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/utilities/amr_kdtree/amr_kdtree.py", line 668, in initialize_source
  94. self.volume.initialize_source()
  95. im = cam.snapshot()
  96. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/utilities/amr_kdtree/amr_kdtree.py", line 668, in initialize_source
  97. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1102, in snapshot
  98. brick.cast_plane(tfp, vector_plane)
  99. KeyboardInterrupt
  100. Traceback (most recent call last):
  101. File "fisheye_example.py", line 50, in <module>
  102. im = cam.snapshot()
  103. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1102, in snapshot
  104. brick.cast_plane(tfp, vector_plane)
  105. KeyboardInterrupt
  106. Traceback (most recent call last):
  107. File "fisheye_example.py", line 50, in <module>
  108. im = cam.snapshot()
  109. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1102, in snapshot
  110. Traceback (most recent call last):
  111. File "fisheye_example.py", line 50, in <module>
  112. brick.cast_plane(tfp, vector_plane)
  113. KeyboardInterrupt
  114. im = cam.snapshot()
  115. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1102, in snapshot
  116. brick.cast_plane(tfp, vector_plane)
  117. KeyboardInterrupt
  118. Traceback (most recent call last):
  119. File "fisheye_example.py", line 50, in <module>
  120. im = cam.snapshot()
  121. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1102, in snapshot
  122. brick.cast_plane(tfp, vector_plane)
  123. KeyboardInterrupt
  124. Traceback (most recent call last):
  125. File "fisheye_example.py", line 50, in <module>
  126. im = cam.snapshot()
  127. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/visualization/volume_rendering/camera.py", line 1102, in snapshot
  128. brick.cast_plane(tfp, vector_plane)
  129. KeyboardInterrupt
  130. vcd = current_node.grid.get_vertex_centered_data(field,smoothed=True,no_ghost=self.no_ghost).astype('float64')
  131. vcd = current_node.grid.get_vertex_centered_data(field,smoothed=True,no_ghost=self.no_ghost).astype('float64')
  132. vcd = current_node.grid.get_vertex_centered_data(field,smoothed=True,no_ghost=self.no_ghost).astype('float64')
  133. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 491, in get_vertex_centered_data
  134. vcd = current_node.grid.get_vertex_centered_data(field,smoothed=True,no_ghost=self.no_ghost).astype('float64')
  135. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 491, in get_vertex_centered_data
  136. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 491, in get_vertex_centered_data
  137. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 491, in get_vertex_centered_data
  138. cg = self.retrieve_ghost_zones(1, field, smoothed=smoothed)
  139. cg = self.retrieve_ghost_zones(1, field, smoothed=smoothed)
  140. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 458, in retrieve_ghost_zones
  141. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 458, in retrieve_ghost_zones
  142. cg = self.retrieve_ghost_zones(1, field, smoothed=smoothed)
  143. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 458, in retrieve_ghost_zones
  144. cg = self.retrieve_ghost_zones(1, field, smoothed=smoothed)
  145. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 458, in retrieve_ghost_zones
  146. level, new_left_edge, **kwargs)
  147. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3490, in __init__
  148. level, new_left_edge, **kwargs)
  149. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3490, in __init__
  150. level, new_left_edge, **kwargs)
  151. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3490, in __init__
  152. level, new_left_edge, **kwargs)
  153. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3490, in __init__
  154. AMRCoveringGridBase.__init__(self, *args, **kwargs)
  155. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3346, in __init__
  156. AMRCoveringGridBase.__init__(self, *args, **kwargs)
  157. AMRCoveringGridBase.__init__(self, *args, **kwargs)
  158. AMRCoveringGridBase.__init__(self, *args, **kwargs)
  159. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3346, in __init__
  160. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3346, in __init__
  161. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3346, in __init__
  162. self._refresh_data()
  163. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3365, in _refresh_data
  164. self._refresh_data()
  165. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3365, in _refresh_data
  166. self._refresh_data()
  167. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3365, in _refresh_data
  168. self._refresh_data()
  169. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3365, in _refresh_data
  170. AMR3DData._refresh_data(self)
  171. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 309, in _refresh_data
  172. AMR3DData._refresh_data(self)
  173. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 309, in _refresh_data
  174. self.get_data()
  175. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3537, in get_data
  176. AMR3DData._refresh_data(self)
  177. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 309, in _refresh_data
  178. self.get_data()
  179. AMR3DData._refresh_data(self)
  180. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3562, in get_data
  181. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 309, in _refresh_data
  182. self.get_data()
  183. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3537, in get_data
  184. self._get_list_of_grids()
  185. self.get_data()
  186. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3537, in get_data
  187. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3511, in _get_list_of_grids
  188. self._get_data_from_grid(grid, fields_to_get)
  189. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 102, in save_state
  190. tr = func(self, grid, field, *args, **kwargs)
  191. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3618, in _get_data_from_grid
  192. self._get_list_of_grids()
  193. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3511, in _get_list_of_grids
  194. self._get_list_of_grids()
  195. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3515, in _get_list_of_grids
  196. self.left_edge - buf, self.ActiveDimensions + nz)
  197. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3338, in __init__
  198. g_fields = [grid[field].astype("float64") for field in fields]
  199. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 157, in __getitem__
  200. self.get_data(key)
  201. self.left_edge - buf, self.ActiveDimensions + nz)
  202. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py", line 190, in get_data
  203. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3338, in __init__
  204. temp = self.hierarchy.io.pop(self, field)
  205. count -= cg._get_data_from_grid(g, [])
  206. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 87, in save_state
  207. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/utilities/io_handler.py", line 61, in pop
  208. self.dds = self.pf.h.select_grids(self.level)[0].dds.copy()
  209. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/hierarchy.py", line 103, in select_grids
  210. tr = func(self, grid, field, *args, **kwargs)
  211. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py", line 3439, in _get_data_from_grid
  212. self.dds = self.pf.h.select_grids(self.level)[0].dds.copy()
  213. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/data_objects/hierarchy.py", line 103, in select_grids
  214. grid.child_mask, self.domain_width, ll, 0)
  215. KeyboardInterrupt
  216. return self.grids[self.grid_levels.flat == level]
  217. return self.grids[self.grid_levels.flat == level]
  218. KeyboardInterrupt
  219. KeyboardInterrupt
  220. return self._read_data_set(grid, field)
  221. File "/share/home/01112/tg803911/yt_17May2011/yt-x86_64/src/yt-hg/yt/frontends/enzo/io.py", line 185, in _read_data_set
  222. "/Grid%08i/%s" % (grid.id, field)))
  223. KeyboardInterrupt
  224.  
  225. Child exited abnormally!
  226. Killing remote processes...DONE
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