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rockstar restart error

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May 20th, 2019
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  1. /home/hd/hd_hd/user/yt-conda/lib/python2.7/site-packages/h5py/_hl/dataset.py:313: H5pyDeprecationWarning: dataset.value has been deprecated. Use dataset[()] instead.
  2. "Use dataset[()] instead.", H5pyDeprecationWarning)
  3. P002 yt : [WARNING ] 2019-05-20 13:44:32,464 Total Particle Count: 1.472e+08
  4. P001 yt : [WARNING ] 2019-05-20 13:44:32,464 Total Particle Count: 1.472e+08
  5. File "/home/hd/hd_hd/user/scripts/rockstar_nested.py", line 64, in <module>
  6. File "/home/hd/hd_hd/user/scripts/rockstar_nested.py", line 64, in <module>
  7. File "/home/hd/hd_hd/user/scripts/rockstar_nested.py", line 64, in <module>
  8. File "/home/hd/hd_hd/user/scripts/rockstar_nested.py", line 64, in <module>
  9. File "/home/hd/hd_hd/user/scripts/rockstar_nested.py", line 64, in <module>
  10. File "/home/hd/hd_hd/user/scripts/rockstar_nested.py", line 64, in <module>
  11. File "/home/hd/hd_hd/user/scripts/rockstar_nested.py", line 64, in <module>
  12. rh.run(restart=True)
  13. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 346, in run
  14. rh.run(restart=True)
  15. rh.run(restart=True)
  16. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 346, in run
  17. rh.run(restart=True)
  18. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 346, in run
  19. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 346, in run
  20. rh.run(restart=True)
  21. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 346, in run
  22. rh.run(restart=True)
  23. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 346, in run
  24. rh.run(restart=True)
  25. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 346, in run
  26. min_halo_size = self.min_halo_size)
  27. File "yt/analysis_modules/halo_finding/rockstar/rockstar_interface.pyx", line 292, in yt.analysis_modules.halo_finding.rockstar.rockstar_interface.RockstarInterface.setup_rockstar
  28. min_halo_size = self.min_halo_size)
  29. File "yt/analysis_modules/halo_finding/rockstar/rockstar_interface.pyx", line 292, in yt.analysis_modules.halo_finding.rockstar.rockstar_interface.RockstarInterface.setup_rockstar
  30. min_halo_size = self.min_halo_size)
  31. File "yt/analysis_modules/halo_finding/rockstar/rockstar_interface.pyx", line 292, in yt.analysis_modules.halo_finding.rockstar.rockstar_interface.RockstarInterface.setup_rockstar
  32. min_halo_size = self.min_halo_size)
  33. min_halo_size = self.min_halo_size)
  34. File "yt/analysis_modules/halo_finding/rockstar/rockstar_interface.pyx", line 292, in yt.analysis_modules.halo_finding.rockstar.rockstar_interface.RockstarInterface.setup_rockstar
  35. File "yt/analysis_modules/halo_finding/rockstar/rockstar_interface.pyx", line 292, in yt.analysis_modules.halo_finding.rockstar.rockstar_interface.RockstarInterface.setup_rockstar
  36. min_halo_size = self.min_halo_size)
  37. File "yt/analysis_modules/halo_finding/rockstar/rockstar_interface.pyx", line 292, in yt.analysis_modules.halo_finding.rockstar.rockstar_interface.RockstarInterface.setup_rockstar
  38. min_halo_size = self.min_halo_size)
  39. File "yt/analysis_modules/halo_finding/rockstar/rockstar_interface.pyx", line 292, in yt.analysis_modules.halo_finding.rockstar.rockstar_interface.RockstarInterface.setup_rockstar
  40. tds = self.ts[0]
  41. tds = self.ts[0]
  42. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/data_objects/time_series.py", line 198, in __getitem__
  43. tds = self.ts[0]
  44. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/data_objects/time_series.py", line 198, in __getitem__
  45. tds = self.ts[0]
  46. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/data_objects/time_series.py", line 198, in __getitem__
  47. tds = self.ts[0]
  48. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/data_objects/time_series.py", line 198, in __getitem__
  49. tds = self.ts[0]
  50. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/data_objects/time_series.py", line 198, in __getitem__
  51. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/data_objects/time_series.py", line 198, in __getitem__
  52. tds = self.ts[0]
  53. File "/beegfs/home/hd/hd_hd/user/yt-conda/src/yt-git/yt/data_objects/time_series.py", line 198, in __getitem__
  54. o = self._pre_outputs[key]
  55. o = self._pre_outputs[key]
  56. o = self._pre_outputs[key]
  57. o = self._pre_outputs[key]
  58. o = self._pre_outputs[key]
  59. o = self._pre_outputs[key]
  60. P001 yt : [ERROR ] 2019-05-20 13:44:32,969 IndexError: list index out of range
  61. P001 yt : [ERROR ] 2019-05-20 13:44:32,969 Error occured on rank 0.
  62. o = self._pre_outputs[key]
  63. application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1
  64. P006 yt : [ERROR ] 2019-05-20 13:44:32,969 IndexError: list index out of range
  65. P004 yt : [ERROR ] 2019-05-20 13:44:32,969 IndexError: list index out of range
  66. P000 yt : [ERROR ] 2019-05-20 13:44:32,969 IndexError: list index out of range
  67. P002 yt : [ERROR ] 2019-05-20 13:44:32,970 IndexError: list index out of range
  68. P005 yt : [ERROR ] 2019-05-20 13:44:32,969 IndexError: list index out of range
  69. P003 yt : [ERROR ] 2019-05-20 13:44:32,969 IndexError: list index out of range
  70. application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
  71. P002 yt : [ERROR ] 2019-05-20 13:44:32,970 Error occured on rank 1.
  72. P004 yt : [ERROR ] 2019-05-20 13:44:32,970 Error occured on rank 1.
  73. application called MPI_Abort(MPI_COMM_WORLD, 1) - process 2
  74. P003 yt : [ERROR ] 2019-05-20 13:44:32,970 Error occured on rank 0.
  75. application called MPI_Abort(MPI_COMM_WORLD, 1) - process 4
  76. P005 yt : [ERROR ] 2019-05-20 13:44:32,970 Error occured on rank 2.
  77. application called MPI_Abort(MPI_COMM_WORLD, 1) - process 3
  78. P006 yt : [ERROR ] 2019-05-20 13:44:32,970 Error occured on rank 3.
  79. application called MPI_Abort(MPI_COMM_WORLD, 1) - process 6
  80. application called MPI_Abort(MPI_COMM_WORLD, 1) - process 5
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