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Legend_9813

Maratha 96 kuli qpAdm

Legend_9813
Apr 17th, 2024
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  1. ### THE INPUT PARAMETERS
  2. ##PARAMETER NAME: VALUE
  3. indivname: v54.1.p1_1240K_merged.ind
  4. snpname: v54.1.p1_1240K_merged.snp
  5. genotypename: v54.1.p1_1240K_merged.geno
  6. popleft: left.txt
  7. popright: right.txt
  8. inbreed: NO
  9. allsnps: YES
  10. details: YES
  11. ## qpAdm version: 1201
  12. seed: -2092448867
  13. read 1073741824 bytes
  14. read 2147483648 bytes
  15. read 3221225472 bytes
  16. read 4294967296 bytes
  17. read 5368709120 bytes
  18. read 6218084559 bytes
  19. packed geno read OK
  20. end of inpack
  21.  
  22. left pops:
  23. Maratha_IN-MH
  24. Onge.SG
  25. Indus_Periphery_medAASI
  26. Russia_Srubnaya_Alakul.SG
  27.  
  28. right pops:
  29. Mbuti.DG
  30. EHG
  31. CHG
  32. WSHG
  33. Turkey_N
  34. Levant_PPN
  35. Iran_GanjDareh_N
  36. Mongolia_North_N
  37. China_Paleolithic
  38. Serbia_IronGates_Mesolithic
  39.  
  40. 0 Maratha_IN-MH 1
  41. 1 Onge.SG 6
  42. 2 Indus_Periphery_medAASI 3
  43. 3 Russia_Srubnaya_Alakul.SG 7
  44. 4 Mbuti.DG 14
  45. 5 EHG 16
  46. 6 CHG 2
  47. 7 WSHG 2
  48. 8 Turkey_N 33
  49. 9 Levant_PPN 14
  50. 10 Iran_GanjDareh_N 8
  51. 11 Mongolia_North_N 5
  52. 12 China_Paleolithic 2
  53. 13 Serbia_IronGates_Mesolithic 32
  54. jackknife block size: 0.050
  55. snps: 1150564 indivs: 145
  56. number of blocks for block jackknife: 714
  57. ## ncols: 1150564
  58. coverage: Maratha_IN-MH 162065
  59. coverage: Onge.SG 1143397
  60. coverage: Indus_Periphery_medAASI 802231
  61. coverage: Russia_Srubnaya_Alakul.SG 1148418
  62. coverage: Mbuti.DG 1149711
  63. coverage: EHG 1113964
  64. coverage: CHG 1147700
  65. coverage: WSHG 856571
  66. coverage: Turkey_N 1139051
  67. coverage: Levant_PPN 630400
  68. coverage: Iran_GanjDareh_N 1057033
  69. coverage: Mongolia_North_N 1057835
  70. coverage: China_Paleolithic 1008603
  71. coverage: Serbia_IronGates_Mesolithic 1138678
  72. Effective number of blocks: 601.721
  73. numsnps used: 1150564
  74. codimension 1
  75. f4info:
  76. f4rank: 2 dof: 7 chisq: 5.421 tail: 0.608737479 dofdiff: 9 chisqdiff: -5.421 taildiff: 1
  77. B:
  78. scale 1.000 1.000
  79. EHG 1.343 0.581
  80. CHG 0.845 -0.946
  81. WSHG 0.859 0.012
  82. Turkey_N 1.281 -0.018
  83. Levant_PPN 0.858 -0.088
  84. Iran_GanjDareh_N 0.622 -2.173
  85. Mongolia_North_N -0.508 0.831
  86. China_Paleolithic -0.511 0.718
  87. Serbia_IronGates_Mesolithic 1.569 1.354
  88. A:
  89. scale 446.791 1664.712
  90. Onge.SG -0.986 1.331
  91. Indus_Periphery_medAASI 0.048 -0.649
  92. Russia_Srubnaya_Alakul.SG 1.423 0.899
  93.  
  94.  
  95. full rank
  96. f4info:
  97. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 5.421 taildiff: 0.608737479
  98. B:
  99. scale 443.570 1968.491 296.177
  100. EHG -0.976 0.468 1.440
  101. CHG -1.097 1.250 0.695
  102. WSHG -0.736 0.637 0.873
  103. Turkey_N -1.181 0.739 1.261
  104. Levant_PPN -0.858 0.349 0.819
  105. Iran_GanjDareh_N -1.268 2.476 0.308
  106. Mongolia_North_N 0.938 -0.100 -0.261
  107. China_Paleolithic 0.913 -0.023 -0.291
  108. Serbia_IronGates_Mesolithic -0.921 -0.030 1.781
  109. A:
  110. scale 1.732 1.732 1.732
  111. Onge.SG 1.732 0.000 0.000
  112. Indus_Periphery_medAASI 0.000 1.732 0.000
  113. Russia_Srubnaya_Alakul.SG 0.000 0.000 1.732
  114.  
  115.  
  116. best coefficients: 0.224 0.643 0.133
  117. Jackknife mean: 0.224227267 0.642008147 0.133764586
  118. std. errors: 0.033 0.050 0.027
  119.  
  120. error covariance (* 1,000,000)
  121. 1060 -1418 358
  122. -1418 2515 -1098
  123. 358 -1098 740
  124.  
  125.  
  126. summ: Maratha_IN-MH 3 0.608737 0.224 0.642 0.134 1060 -1418 358 2515 -1098 ...
  127. 740
  128.  
  129. fixed pat wt dof chisq tail prob
  130. 000 0 7 5.421 0.608737 0.224 0.643 0.133
  131. 001 1 8 26.125 0.000999792 0.147 0.853 0.000
  132. 010 1 8 175.797 0 0.579 0.000 0.421
  133. 100 1 8 41.892 1.41809e-06 0.000 0.960 0.040
  134. 011 2 9 584.534 0 1.000 0.000 0.000
  135. 101 2 9 43.751 1.56664e-06 0.000 1.000 0.000
  136. 110 2 9 1059.540 0 0.000 0.000 1.000
  137. best pat: 000 0.608737 - -
  138. best pat: 001 0.000999792 chi(nested): 20.704 p-value for nested model: 5.36017e-06
  139. best pat: 101 1.56664e-06 chi(nested): 17.626 p-value for nested model: 2.6882e-05
  140.  
  141. coeffs: 0.224 0.643 0.133
  142.  
  143. ## dscore:: f_4(Base, Fit, Rbase, right2)
  144. ## genstat:: f_4(Base, Fit, right1, right2)
  145.  
  146. details: Onge.SG EHG -0.002201 -8.412639
  147. details: Indus_Periphery_medAASI EHG 0.000238 1.022591
  148. details: Russia_Srubnaya_Alakul.SG EHG 0.004862 20.608157
  149. dscore: EHG f4: 0.000309 Z: 1.502022
  150.  
  151. details: Onge.SG CHG -0.002473 -9.997875
  152. details: Indus_Periphery_medAASI CHG 0.000635 2.593529
  153. details: Russia_Srubnaya_Alakul.SG CHG 0.002346 10.395854
  154. dscore: CHG f4: 0.000168 Z: 0.818573
  155.  
  156. details: Onge.SG WSHG -0.001660 -5.935030
  157. details: Indus_Periphery_medAASI WSHG 0.000324 1.160471
  158. details: Russia_Srubnaya_Alakul.SG WSHG 0.002946 11.804681
  159. dscore: WSHG f4: 0.000229 Z: 0.972469
  160.  
  161. details: Onge.SG Turkey_N -0.002662 -10.545820
  162. details: Indus_Periphery_medAASI Turkey_N 0.000375 1.510978
  163. details: Russia_Srubnaya_Alakul.SG Turkey_N 0.004259 17.849862
  164. dscore: Turkey_N f4: 0.000213 Z: 1.008492
  165.  
  166. details: Onge.SG Levant_PPN -0.001935 -7.070406
  167. details: Indus_Periphery_medAASI Levant_PPN 0.000177 0.609351
  168. details: Russia_Srubnaya_Alakul.SG Levant_PPN 0.002766 10.885774
  169. dscore: Levant_PPN f4: 0.000050 Z: 0.205884
  170.  
  171. details: Onge.SG Iran_GanjDareh_N -0.002858 -12.623953
  172. details: Indus_Periphery_medAASI Iran_GanjDareh_N 0.001258 5.415243
  173. details: Russia_Srubnaya_Alakul.SG Iran_GanjDareh_N 0.001040 4.981944
  174. dscore: Iran_GanjDareh_N f4: 0.000308 Z: 1.583256
  175.  
  176. details: Onge.SG Mongolia_North_N 0.002116 8.074440
  177. details: Indus_Periphery_medAASI Mongolia_North_N -0.000051 -0.225858
  178. details: Russia_Srubnaya_Alakul.SG Mongolia_North_N -0.000882 -3.706412
  179. dscore: Mongolia_North_N f4: 0.000323 Z: 1.600842
  180.  
  181. details: Onge.SG China_Paleolithic 0.002058 7.480309
  182. details: Indus_Periphery_medAASI China_Paleolithic -0.000012 -0.047956
  183. details: Russia_Srubnaya_Alakul.SG China_Paleolithic -0.000983 -4.460231
  184. dscore: China_Paleolithic f4: 0.000322 Z: 1.536633
  185.  
  186. details: Onge.SG Serbia_IronGates_Mesolithic -0.002077 -7.602316
  187. details: Indus_Periphery_medAASI Serbia_IronGates_Mesolithic -0.000015 -0.058985
  188. details: Russia_Srubnaya_Alakul.SG Serbia_IronGates_Mesolithic 0.006013 23.837102
  189. dscore: Serbia_IronGates_Mesolithic f4: 0.000327 Z: 1.464486
  190.  
  191. gendstat: Mbuti.DG EHG 1.502
  192. gendstat: Mbuti.DG CHG 0.819
  193. gendstat: Mbuti.DG WSHG 0.972
  194. gendstat: Mbuti.DG Turkey_N 1.008
  195. gendstat: Mbuti.DG Levant_PPN 0.206
  196. gendstat: Mbuti.DG Iran_GanjDareh_N 1.583
  197. gendstat: Mbuti.DG Mongolia_North_N 1.601
  198. gendstat: Mbuti.DG China_Paleolithic 1.537
  199. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 1.464
  200. gendstat: EHG CHG -0.674
  201. gendstat: EHG WSHG -0.417
  202. gendstat: EHG Turkey_N -0.584
  203. gendstat: EHG Levant_PPN -1.078
  204. gendstat: EHG Iran_GanjDareh_N -0.003
  205. gendstat: EHG Mongolia_North_N 0.073
  206. gendstat: EHG China_Paleolithic 0.059
  207. gendstat: EHG Serbia_IronGates_Mesolithic 0.126
  208. gendstat: CHG WSHG 0.251
  209. gendstat: CHG Turkey_N 0.236
  210. gendstat: CHG Levant_PPN -0.468
  211. gendstat: CHG Iran_GanjDareh_N 0.691
  212. gendstat: CHG Mongolia_North_N 0.687
  213. gendstat: CHG China_Paleolithic 0.616
  214. gendstat: CHG Serbia_IronGates_Mesolithic 0.741
  215. gendstat: WSHG Turkey_N -0.071
  216. gendstat: WSHG Levant_PPN -0.657
  217. gendstat: WSHG Iran_GanjDareh_N 0.325
  218. gendstat: WSHG Mongolia_North_N 0.384
  219. gendstat: WSHG China_Paleolithic 0.353
  220. gendstat: WSHG Serbia_IronGates_Mesolithic 0.452
  221. gendstat: Turkey_N Levant_PPN -0.784
  222. gendstat: Turkey_N Iran_GanjDareh_N 0.527
  223. gendstat: Turkey_N Mongolia_North_N 0.541
  224. gendstat: Turkey_N China_Paleolithic 0.455
  225. gendstat: Turkey_N Serbia_IronGates_Mesolithic 0.749
  226. gendstat: Levant_PPN Iran_GanjDareh_N 1.053
  227. gendstat: Levant_PPN Mongolia_North_N 1.062
  228. gendstat: Levant_PPN China_Paleolithic 0.976
  229. gendstat: Levant_PPN Serbia_IronGates_Mesolithic 1.173
  230. gendstat: Iran_GanjDareh_N Mongolia_North_N 0.068
  231. gendstat: Iran_GanjDareh_N China_Paleolithic 0.059
  232. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic 0.092
  233. gendstat: Mongolia_North_N China_Paleolithic -0.006
  234. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic 0.019
  235. gendstat: China_Paleolithic Serbia_IronGates_Mesolithic 0.022
  236.  
  237. ##end of qpAdm: 109.046 seconds cpu 1246.953 Mbytes in use
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