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  1. travis_fold:start:worker_info
  2. Worker information
  3. hostname: i-0e4df69-production-2-worker-com-ec2.travisci.net:9034a5ad-84fd-403c-bb4f-005a1d9b1fb5
  4. version: v2.5.0 https://github.com/travis-ci/worker/tree/da3a43228dffc0fcca5a46569ca786b22991979f
  5. instance: 9c716ad:travis:default
  6. startup: 1.948252004s
  7. travis_fold:end:worker_info
  8. travis_fold:start:system_info
  9. Build system information
  10. Build language: r
  11. Build group: stable
  12. Build dist: trusty
  13. Build id: 44122776
  14. Job id: 72345676
  15. travis-build version: 4a669c7bf
  16. Build image provisioning date and time
  17. Thu Nov 10 03:26:46 UTC 2016
  18. Operating System Details
  19. Distributor ID: Ubuntu
  20. Description: Ubuntu 14.04.5 LTS
  21. Release: 14.04
  22. Codename: trusty
  23. Linux Version
  24. 4.4.0-45-generic
  25. Cookbooks Version
  26. 58fad1f https://github.com/travis-ci/travis-cookbooks/tree/58fad1f
  27. git version
  28. git version 1.9.1
  29. bash version
  30. GNU bash, version 4.3.11(1)-release (x86_64-pc-linux-gnu)
  31. Copyright (C) 2013 Free Software Foundation, Inc.
  32. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
  33.  
  34. This is free software; you are free to change and redistribute it.
  35. There is NO WARRANTY, to the extent permitted by law.
  36. gcc version
  37. gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4
  38. Copyright (C) 2013 Free Software Foundation, Inc.
  39. This is free software; see the source for copying conditions. There is NO
  40. warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
  41.  
  42. docker version
  43. Client:
  44. Version: 1.12.3
  45. API version: 1.24
  46. Go version: go1.6.3
  47. Git commit: 6b644ec
  48. Built: Wed Oct 26 23:26:11 2016
  49. OS/Arch: linux/amd64
  50. clang version
  51. clang version 3.5.0 (tags/RELEASE_350/final)
  52. Target: x86_64-unknown-linux-gnu
  53. Thread model: posix
  54. jq version
  55. jq-1.5
  56. bats version
  57. Bats 0.4.0
  58. gimme version
  59. v1.0.0
  60. nvm version
  61. 0.32.0
  62. perlbrew version
  63. /home/travis/perl5/perlbrew/bin/perlbrew - App::perlbrew/0.76
  64. postgresql client version
  65. psql (PostgreSQL) 9.6.1
  66. phpenv version
  67. rbenv 1.0.0-33-gc7dcaf1
  68. rvm version
  69. rvm 1.27.0 (latest) by Wayne E. Seguin <wayneeseguin@gmail.com>, Michal Papis <mpapis@gmail.com> [https://rvm.io/]
  70. default ruby version
  71. ruby 2.3.1p112 (2016-04-26 revision 54768) [x86_64-linux]
  72. Pre-installed Ruby versions
  73. ruby-2.2.5
  74. ruby-2.3.1
  75. travis_fold:end:system_info
  76. 
  77. travis_fold:start:fix.CVE-2015-7547
  78. $ export DEBIAN_FRONTEND=noninteractive
  79. Reading package lists...
  80. Building dependency tree...
  81. Reading state information...
  82. The following extra packages will be installed:
  83. libc-dev-bin libc6-dev
  84. Suggested packages:
  85. glibc-doc
  86. The following packages will be upgraded:
  87. libc-dev-bin libc6 libc6-dev
  88. 3 upgraded, 0 newly installed, 0 to remove and 167 not upgraded.
  89. Need to get 6,715 kB of archives.
  90. After this operation, 28.7 kB of additional disk space will be used.
  91. Get:1 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libc6-dev amd64 2.19-0ubuntu6.11 [1,912 kB]
  92. Get:2 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libc-dev-bin amd64 2.19-0ubuntu6.11 [69.0 kB]
  93. Get:3 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libc6 amd64 2.19-0ubuntu6.11 [4,734 kB]
  94. Fetched 6,715 kB in 1s (5,773 kB/s)
  95. Preconfiguring packages ...
  96. (Reading database ...
  97. (Reading database ... 5%
  98. (Reading database ... 10%
  99. (Reading database ... 15%
  100. (Reading database ... 20%
  101. (Reading database ... 25%
  102. (Reading database ... 30%
  103. (Reading database ... 35%
  104. (Reading database ... 40%
  105. (Reading database ... 45%
  106. (Reading database ... 50%
  107. (Reading database ... 55%
  108. (Reading database ... 60%
  109. (Reading database ... 65%
  110. (Reading database ... 70%
  111. (Reading database ... 75%
  112. (Reading database ... 80%
  113. (Reading database ... 85%
  114. (Reading database ... 90%
  115. (Reading database ... 95%
  116. (Reading database ... 100%
  117. (Reading database ... 69904 files and directories currently installed.)
  118. Preparing to unpack .../libc6-dev_2.19-0ubuntu6.11_amd64.deb ...
  119. Unpacking libc6-dev:amd64 (2.19-0ubuntu6.11) over (2.19-0ubuntu6.9) ...
  120. Preparing to unpack .../libc-dev-bin_2.19-0ubuntu6.11_amd64.deb ...
  121. Unpacking libc-dev-bin (2.19-0ubuntu6.11) over (2.19-0ubuntu6.9) ...
  122. Preparing to unpack .../libc6_2.19-0ubuntu6.11_amd64.deb ...
  123. Unpacking libc6:amd64 (2.19-0ubuntu6.11) over (2.19-0ubuntu6.9) ...
  124. Setting up libc6:amd64 (2.19-0ubuntu6.11) ...
  125. Setting up libc-dev-bin (2.19-0ubuntu6.11) ...
  126. Setting up libc6-dev:amd64 (2.19-0ubuntu6.11) ...
  127. Processing triggers for libc-bin (2.19-0ubuntu6.9) ...
  128. travis_fold:end:fix.CVE-2015-7547
  129. Removing symlink /usr/lib/jvm/java-8-oracle-amd64
  130. $ sudo rm -f /usr/lib/jvm/java-8-oracle-amd64
  131. Reload jdk_switcher
  132. $ source $HOME/.jdk_switcher_rc
  133. R for Travis-CI is not officially supported, but is community maintained.
  134. Please file any issues at https://github.com/travis-ci/travis-ci/issues
  135. and mention @craigcitro and @jimhester in the issue
  136. travis_fold:start:R-install
  137. Installing R
  138. travis_time:start:02fd4398
  139. $ sudo add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)/"
  140.  
  141. travis_time:end:02fd4398:start=1492419738542984188,finish=1492419739094640273,duration=551656085
  142. travis_time:start:0b902b60
  143. $ sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
  144. Executing: gpg --ignore-time-conflict --no-options --no-default-keyring --homedir /tmp/tmp.28g3mtuKGv --no-auto-check-trustdb --trust-model always --keyring /etc/apt/trusted.gpg --primary-keyring /etc/apt/trusted.gpg --keyring /etc/apt/trusted.gpg.d/apt.postgresql.org.gpg --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
  145. gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com
  146. gpg: key E084DAB9: public key "Michael Rutter <marutter@gmail.com>" imported
  147. gpg: Total number processed: 1
  148. gpg: imported: 1 (RSA: 1)
  149.  
  150. travis_time:end:0b902b60:start=1492419739100169307,finish=1492419739473206806,duration=373037499
  151. travis_time:start:07842768
  152. $ sudo add-apt-repository -y "ppa:marutter/rrutter"
  153. gpg: keyring `/tmp/tmpy2ubh_l8/secring.gpg' created
  154. gpg: keyring `/tmp/tmpy2ubh_l8/pubring.gpg' created
  155. gpg: requesting key B04C661B from hkp server keyserver.ubuntu.com
  156. gpg: /tmp/tmpy2ubh_l8/trustdb.gpg: trustdb created
  157. gpg: key B04C661B: public key "Launchpad PPA for marutter" imported
  158. gpg: Total number processed: 1
  159. gpg: imported: 1 (RSA: 1)
  160. OK
  161.  
  162. travis_time:end:07842768:start=1492419739478358768,finish=1492419740786014350,duration=1307655582
  163. travis_time:start:01e79460
  164. $ sudo add-apt-repository -y "ppa:marutter/c2d4u"
  165. gpg: keyring `/tmp/tmpxz0j3mr1/secring.gpg' created
  166. gpg: keyring `/tmp/tmpxz0j3mr1/pubring.gpg' created
  167. gpg: requesting key B04C661B from hkp server keyserver.ubuntu.com
  168. gpg: /tmp/tmpxz0j3mr1/trustdb.gpg: trustdb created
  169. gpg: key B04C661B: public key "Launchpad PPA for marutter" imported
  170. gpg: Total number processed: 1
  171. gpg: imported: 1 (RSA: 1)
  172. OK
  173.  
  174. travis_time:end:01e79460:start=1492419740791032799,finish=1492419742089786759,duration=1298753960
  175. travis_time:start:04061f52
  176. $ sudo apt-get update -qq
  177.  
  178. travis_time:end:04061f52:start=1492419742094882543,finish=1492419746971366281,duration=4876483738
  179. travis_time:start:0dc547c8
  180. $ sudo apt-get install -y --no-install-recommends build-essential gcc g++ gfortran libblas-dev liblapack-dev libncurses5-dev libreadline-dev libjpeg-dev libpng-dev zlib1g-dev libbz2-dev liblzma-dev cdbs qpdf texinfo libmagick++-dev libssh2-1-dev
  181.  
  182. Reading package lists... 0%
  183.  
  184. Reading package lists... 0%
  185.  
  186. Reading package lists... 0%
  187.  
  188. Reading package lists... 0%
  189.  
  190. Reading package lists... 0%
  191.  
  192. Reading package lists... 0%
  193.  
  194. Reading package lists... 0%
  195.  
  196. Reading package lists... 0%
  197.  
  198. Reading package lists... 0%
  199.  
  200. Reading package lists... 0%
  201.  
  202. Reading package lists... 0%
  203.  
  204. Reading package lists... 0%
  205.  
  206. Reading package lists... 0%
  207.  
  208. Reading package lists... 0%
  209.  
  210. Reading package lists... 0%
  211.  
  212. Reading package lists... 0%
  213.  
  214. Reading package lists... 0%
  215.  
  216. Reading package lists... 0%
  217.  
  218. Reading package lists... 0%
  219.  
  220. Reading package lists... 0%
  221.  
  222. Reading package lists... 0%
  223.  
  224. Reading package lists... 0%
  225.  
  226. Reading package lists... 0%
  227.  
  228. Reading package lists... 0%
  229.  
  230. Reading package lists... 0%
  231.  
  232. Reading package lists... 0%
  233.  
  234. Reading package lists... 0%
  235.  
  236. Reading package lists... 0%
  237.  
  238. Reading package lists... 0%
  239.  
  240. Reading package lists... 0%
  241.  
  242. Reading package lists... 0%
  243.  
  244. Reading package lists... 0%
  245.  
  246. Reading package lists... 0%
  247.  
  248. Reading package lists... 0%
  249.  
  250. Reading package lists... 0%
  251.  
  252. Reading package lists... 0%
  253.  
  254. Reading package lists... 0%
  255.  
  256. Reading package lists... 0%
  257.  
  258. Reading package lists... 2%
  259.  
  260. Reading package lists... 55%
  261.  
  262. Reading package lists... 55%
  263.  
  264. Reading package lists... 55%
  265.  
  266. Reading package lists... 55%
  267.  
  268. Reading package lists... 61%
  269.  
  270. Reading package lists... 61%
  271.  
  272. Reading package lists... 61%
  273.  
  274. Reading package lists... 61%
  275.  
  276. Reading package lists... 73%
  277.  
  278. Reading package lists... 73%
  279.  
  280. Reading package lists... 73%
  281.  
  282. Reading package lists... 73%
  283.  
  284. Reading package lists... 73%
  285.  
  286. Reading package lists... 73%
  287.  
  288. Reading package lists... 74%
  289.  
  290. Reading package lists... 74%
  291.  
  292. Reading package lists... 74%
  293.  
  294. Reading package lists... 74%
  295.  
  296. Reading package lists... Done
  297.  
  298.  
  299. Building dependency tree... 0%
  300.  
  301. Building dependency tree... 0%
  302.  
  303. Building dependency tree... 50%
  304.  
  305. Building dependency tree... 50%
  306.  
  307. Building dependency tree
  308.  
  309.  
  310. Reading state information... 0%
  311.  
  312. Reading state information... 0%
  313.  
  314. Reading state information... Done
  315.  
  316. Note, selecting 'libpng12-dev' instead of 'libpng-dev'
  317. build-essential is already the newest version.
  318. g++ is already the newest version.
  319. g++ set to manually installed.
  320. gcc is already the newest version.
  321. gcc set to manually installed.
  322. libbz2-dev is already the newest version.
  323. libjpeg-dev is already the newest version.
  324. liblzma-dev is already the newest version.
  325. liblzma-dev set to manually installed.
  326. libncurses5-dev is already the newest version.
  327. libreadline-dev is already the newest version.
  328. zlib1g-dev is already the newest version.
  329. zlib1g-dev set to manually installed.
  330. libpng12-dev is already the newest version.
  331. libpng12-dev set to manually installed.
  332. The following extra packages will be installed:
  333. debhelper dh-apparmor dh-translations gfortran-4.8 intltool intltool-debian
  334. libencode-locale-perl libfile-listing-perl libgfortran-4.8-dev
  335. libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  336. libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  337. libhttp-negotiate-perl libintl-perl libio-html-perl libio-socket-ssl-perl
  338. liblwp-mediatypes-perl liblwp-protocol-https-perl libmagick++5
  339. libmagickcore-dev libmagickcore5 libmagickcore5-extra libmagickwand-dev
  340. libmagickwand5 libnet-http-perl libnet-ssleay-perl libqpdf13 libssh2-1
  341. libtext-unidecode-perl liburi-perl libwww-perl libwww-robotrules-perl
  342. libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl
  343. libxml-sax-base-perl libxml-sax-perl man-db po-debconf python-scour
  344. Suggested packages:
  345. devscripts dh-make apparmor-easyprof gfortran-multilib gfortran-doc
  346. gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg libdata-dump-perl
  347. libintl-xs-perl libcrypt-ssleay-perl libauthen-ntlm-perl groff
  348. libmail-box-perl python-rsvg python-cairo texlive-base texlive-latex-base
  349. texlive-generic-recommended texinfo-doc-nonfree
  350. Recommended packages:
  351. libhtml-format-perl libio-socket-inet6-perl libio-socket-ip-perl
  352. libhtml-form-perl libhttp-daemon-perl libmailtools-perl
  353. libxml-sax-expat-perl libmail-sendmail-perl
  354. The following NEW packages will be installed:
  355. cdbs debhelper dh-apparmor dh-translations gfortran gfortran-4.8 intltool
  356. intltool-debian libblas-dev libencode-locale-perl libfile-listing-perl
  357. libgfortran-4.8-dev libhtml-parser-perl libhtml-tagset-perl
  358. libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
  359. libhttp-message-perl libhttp-negotiate-perl libintl-perl libio-html-perl
  360. libio-socket-ssl-perl liblapack-dev liblwp-mediatypes-perl
  361. liblwp-protocol-https-perl libmagick++-dev libmagick++5 libnet-http-perl
  362. libnet-ssleay-perl libqpdf13 libssh2-1 libssh2-1-dev libtext-unidecode-perl
  363. liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl
  364. libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl
  365. libxml-sax-perl man-db po-debconf python-scour qpdf texinfo
  366. The following packages will be upgraded:
  367. libmagickcore-dev libmagickcore5 libmagickcore5-extra libmagickwand-dev
  368. libmagickwand5
  369. 5 upgraded, 46 newly installed, 0 to remove and 162 not upgraded.
  370. Need to get 16.7 MB of archives.
  371. After this operation, 52.3 MB of additional disk space will be used.
  372.  
  373.  
  374. 0% [Working]
  375.  
  376. Get:1 http://archive.ubuntu.com/ubuntu/ trusty-updates/main man-db amd64 2.6.7.1-1ubuntu1 [857 kB]
  377.  
  378.  
  379. 0% [1 man-db 14.2 kB/857 kB 2%]
  380.  
  381. 5% [Working]
  382.  
  383. Get:2 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libmagickwand-dev amd64 8:6.7.7.10-6ubuntu3.6 [270 kB]
  384.  
  385.  
  386. 5% [2 libmagickwand-dev 59.5 kB/270 kB 22%]
  387.  
  388. 7% [Working]
  389.  
  390. Get:3 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libmagickwand5 amd64 8:6.7.7.10-6ubuntu3.6 [266 kB]
  391.  
  392.  
  393. 7% [3 libmagickwand5 51.0 kB/266 kB 19%]
  394.  
  395. 8% [Working]
  396.  
  397. Get:4 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libmagickcore-dev amd64 8:6.7.7.10-6ubuntu3.6 [907 kB]
  398.  
  399.  
  400. 8% [4 libmagickcore-dev 0 B/907 kB 0%]
  401.  
  402. 14% [Working]
  403.  
  404. Get:5 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libmagickcore5-extra amd64 8:6.7.7.10-6ubuntu3.6 [58.0 kB]
  405.  
  406.  
  407. 14% [5 libmagickcore5-extra 57.0 kB/58.0 kB 98%]
  408.  
  409. 14% [Working]
  410.  
  411. Get:6 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libmagickcore5 amd64 8:6.7.7.10-6ubuntu3.6 [1,478 kB]
  412.  
  413.  
  414. 14% [6 libmagickcore5 45.1 kB/1,478 kB 3%]
  415.  
  416. 23% [Working]
  417.  
  418. Get:7 http://archive.ubuntu.com/ubuntu/ trusty-updates/main libmagick++5 amd64 8:6.7.7.10-6ubuntu3.6 [102 kB]
  419.  
  420.  
  421. 23% [7 libmagick++5 27.6 kB/102 kB 27%]
  422.  
  423. 24% [Working]
  424.  
  425. Get:8 http://archive.ubuntu.com/ubuntu/ trusty/main libqpdf13 amd64 5.1.1-1 [295 kB]
  426.  
  427.  
  428. 24% [8 libqpdf13 56.4 kB/295 kB 19%]
  429.  
  430. 25% [Working]
  431.  
  432. Get:9 http://archive.ubuntu.com/ubuntu/ trusty-updates/universe libssh2-1 amd64 1.4.3-2ubuntu0.1 [66.4 kB]
  433.  
  434.  
  435. 25% [9 libssh2-1 23.2 kB/66.4 kB 35%]
  436.  
  437. 26% [Working]
  438.  
  439. Get:10 http://archive.ubuntu.com/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB]
  440.  
  441.  
  442. 26% [10 intltool-debian 22.1 kB/31.6 kB 70%]
  443.  
  444. 26% [Working]
  445.  
  446. Get:11 http://archive.ubuntu.com/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB]
  447.  
  448.  
  449. 26% [11 po-debconf 41.0 kB/210 kB 19%]
  450.  
  451. 27% [Working]
  452.  
  453. Get:12 http://archive.ubuntu.com/ubuntu/ trusty-updates/main dh-apparmor all 2.10.95-0ubuntu2.6~14.04.1 [13.0 kB]
  454.  
  455.  
  456. 27% [12 dh-apparmor 13.0 kB/13.0 kB 100%]
  457.  
  458. 27% [Working]
  459.  
  460. Get:13 http://archive.ubuntu.com/ubuntu/ trusty/main debhelper all 9.20131227ubuntu1 [604 kB]
  461.  
  462.  
  463. 27% [13 debhelper 28.7 kB/604 kB 5%]
  464.  
  465. 31% [Working]
  466.  
  467. Get:14 http://archive.ubuntu.com/ubuntu/ trusty/main liburi-perl all 1.60-1 [89.6 kB]
  468.  
  469.  
  470. 31% [14 liburi-perl 14.0 kB/89.6 kB 16%]
  471.  
  472. 31% [Working]
  473.  
  474. Get:15 http://archive.ubuntu.com/ubuntu/ trusty/main libencode-locale-perl all 1.03-1 [12.4 kB]
  475.  
  476.  
  477. 31% [15 libencode-locale-perl 12.4 kB/12.4 kB 100%]
  478.  
  479. 31% [Working]
  480.  
  481. Get:16 http://archive.ubuntu.com/ubuntu/ trusty/main libhttp-date-perl all 6.02-1 [10.4 kB]
  482.  
  483.  
  484. 32% [16 libhttp-date-perl 10.4 kB/10.4 kB 100%]
  485.  
  486. 32% [Working]
  487.  
  488. Get:17 http://archive.ubuntu.com/ubuntu/ trusty/main libfile-listing-perl all 6.04-1 [9,774 B]
  489.  
  490.  
  491. 32% [17 libfile-listing-perl 9,774 B/9,774 B 100%]
  492.  
  493. 32% [Working]
  494.  
  495. Get:18 http://archive.ubuntu.com/ubuntu/ trusty/main libhtml-tagset-perl all 3.20-2 [13.5 kB]
  496.  
  497.  
  498. 32% [18 libhtml-tagset-perl 13.5 kB/13.5 kB 100%]
  499.  
  500. 32% [Working]
  501.  
  502. Get:19 http://archive.ubuntu.com/ubuntu/ trusty/main libhtml-parser-perl amd64 3.71-1build1 [98.2 kB]
  503.  
  504.  
  505. 32% [19 libhtml-parser-perl 7,889 B/98.2 kB 8%]
  506.  
  507. 32% [Working]
  508.  
  509. Get:20 http://archive.ubuntu.com/ubuntu/ trusty/main libhtml-tree-perl all 5.03-1 [215 kB]
  510.  
  511.  
  512. 32% [20 libhtml-tree-perl 40.5 kB/215 kB 19%]
  513.  
  514. 34% [Working]
  515.  
  516. Get:21 http://archive.ubuntu.com/ubuntu/ trusty/main libio-html-perl all 1.00-1 [15.7 kB]
  517.  
  518.  
  519. 34% [21 libio-html-perl 15.7 kB/15.7 kB 100%]
  520.  
  521. 34% [Working]
  522.  
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  769. Preparing to unpack .../libmagickcore5-extra_8%3a6.7.7.10-6ubuntu3.6_amd64.deb ...
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  774. Preparing to unpack .../libmagick++5_8%3a6.7.7.10-6ubuntu3.6_amd64.deb ...
  775. Unpacking libmagick++5:amd64 (8:6.7.7.10-6ubuntu3.6) ...
  776. Selecting previously unselected package libqpdf13:amd64.
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  778. Unpacking libqpdf13:amd64 (5.1.1-1) ...
  779. Selecting previously unselected package libssh2-1:amd64.
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  782. Selecting previously unselected package intltool-debian.
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  784. Unpacking intltool-debian (0.35.0+20060710.1) ...
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  786. Preparing to unpack .../po-debconf_1.0.16+nmu2ubuntu1_all.deb ...
  787. Unpacking po-debconf (1.0.16+nmu2ubuntu1) ...
  788. Selecting previously unselected package dh-apparmor.
  789. Preparing to unpack .../dh-apparmor_2.10.95-0ubuntu2.6~14.04.1_all.deb ...
  790. Unpacking dh-apparmor (2.10.95-0ubuntu2.6~14.04.1) ...
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  793. Unpacking debhelper (9.20131227ubuntu1) ...
  794. Selecting previously unselected package liburi-perl.
  795. Preparing to unpack .../liburi-perl_1.60-1_all.deb ...
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  797. Selecting previously unselected package libencode-locale-perl.
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  799. Unpacking libencode-locale-perl (1.03-1) ...
  800. Selecting previously unselected package libhttp-date-perl.
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  803. Selecting previously unselected package libfile-listing-perl.
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  806. Selecting previously unselected package libhtml-tagset-perl.
  807. Preparing to unpack .../libhtml-tagset-perl_3.20-2_all.deb ...
  808. Unpacking libhtml-tagset-perl (3.20-2) ...
  809. Selecting previously unselected package libhtml-parser-perl.
  810. Preparing to unpack .../libhtml-parser-perl_3.71-1build1_amd64.deb ...
  811. Unpacking libhtml-parser-perl (3.71-1build1) ...
  812. Selecting previously unselected package libhtml-tree-perl.
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  814. Unpacking libhtml-tree-perl (5.03-1) ...
  815. Selecting previously unselected package libio-html-perl.
  816. Preparing to unpack .../libio-html-perl_1.00-1_all.deb ...
  817. Unpacking libio-html-perl (1.00-1) ...
  818. Selecting previously unselected package liblwp-mediatypes-perl.
  819. Preparing to unpack .../liblwp-mediatypes-perl_6.02-1_all.deb ...
  820. Unpacking liblwp-mediatypes-perl (6.02-1) ...
  821. Selecting previously unselected package libhttp-message-perl.
  822. Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ...
  823. Unpacking libhttp-message-perl (6.06-1) ...
  824. Selecting previously unselected package libhttp-cookies-perl.
  825. Preparing to unpack .../libhttp-cookies-perl_6.00-2_all.deb ...
  826. Unpacking libhttp-cookies-perl (6.00-2) ...
  827. Selecting previously unselected package libhttp-negotiate-perl.
  828. Preparing to unpack .../libhttp-negotiate-perl_6.00-2_all.deb ...
  829. Unpacking libhttp-negotiate-perl (6.00-2) ...
  830. Selecting previously unselected package libnet-ssleay-perl.
  831. Preparing to unpack .../libnet-ssleay-perl_1.58-1_amd64.deb ...
  832. Unpacking libnet-ssleay-perl (1.58-1) ...
  833. Selecting previously unselected package libio-socket-ssl-perl.
  834. Preparing to unpack .../libio-socket-ssl-perl_1.965-1ubuntu1_all.deb ...
  835. Unpacking libio-socket-ssl-perl (1.965-1ubuntu1) ...
  836. Selecting previously unselected package libnet-http-perl.
  837. Preparing to unpack .../libnet-http-perl_6.06-1_all.deb ...
  838. Unpacking libnet-http-perl (6.06-1) ...
  839. Selecting previously unselected package liblwp-protocol-https-perl.
  840. Preparing to unpack .../liblwp-protocol-https-perl_6.04-2ubuntu0.1_all.deb ...
  841. Unpacking liblwp-protocol-https-perl (6.04-2ubuntu0.1) ...
  842. Selecting previously unselected package libwww-robotrules-perl.
  843. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ...
  844. Unpacking libwww-robotrules-perl (6.01-1) ...
  845. Selecting previously unselected package libwww-perl.
  846. Preparing to unpack .../libwww-perl_6.05-2_all.deb ...
  847. Unpacking libwww-perl (6.05-2) ...
  848. Selecting previously unselected package libxml-parser-perl.
  849. Preparing to unpack .../libxml-parser-perl_2.41-1build3_amd64.deb ...
  850. Unpacking libxml-parser-perl (2.41-1build3) ...
  851. Selecting previously unselected package intltool.
  852. Preparing to unpack .../intltool_0.50.2-2_all.deb ...
  853. Unpacking intltool (0.50.2-2) ...
  854. Selecting previously unselected package dh-translations.
  855. Preparing to unpack .../dh-translations_121_all.deb ...
  856. Unpacking dh-translations (121) ...
  857. Selecting previously unselected package python-scour.
  858. Preparing to unpack .../python-scour_0.26-3build1_all.deb ...
  859. Unpacking python-scour (0.26-3build1) ...
  860. Selecting previously unselected package cdbs.
  861. Preparing to unpack .../cdbs_0.4.122ubuntu2_all.deb ...
  862. Unpacking cdbs (0.4.122ubuntu2) ...
  863. Selecting previously unselected package libgfortran-4.8-dev:amd64.
  864. Preparing to unpack .../libgfortran-4.8-dev_4.8.4-2ubuntu1~14.04.3_amd64.deb ...
  865. Unpacking libgfortran-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.3) ...
  866. Selecting previously unselected package gfortran-4.8.
  867. Preparing to unpack .../gfortran-4.8_4.8.4-2ubuntu1~14.04.3_amd64.deb ...
  868. Unpacking gfortran-4.8 (4.8.4-2ubuntu1~14.04.3) ...
  869. Selecting previously unselected package gfortran.
  870. Preparing to unpack .../gfortran_4%3a4.8.2-1ubuntu6_amd64.deb ...
  871. Unpacking gfortran (4:4.8.2-1ubuntu6) ...
  872. Selecting previously unselected package libblas-dev.
  873. Preparing to unpack .../libblas-dev_1.2.20110419-7_amd64.deb ...
  874. Unpacking libblas-dev (1.2.20110419-7) ...
  875. Selecting previously unselected package libintl-perl.
  876. Preparing to unpack .../libintl-perl_1.23-1build1_all.deb ...
  877. Unpacking libintl-perl (1.23-1build1) ...
  878. Selecting previously unselected package liblapack-dev.
  879. Preparing to unpack .../liblapack-dev_3.5.0-2ubuntu1_amd64.deb ...
  880. Unpacking liblapack-dev (3.5.0-2ubuntu1) ...
  881. Selecting previously unselected package libmagick++-dev.
  882. Preparing to unpack .../libmagick++-dev_8%3a6.7.7.10-6ubuntu3.6_amd64.deb ...
  883. Unpacking libmagick++-dev (8:6.7.7.10-6ubuntu3.6) ...
  884. Selecting previously unselected package libssh2-1-dev:amd64.
  885. Preparing to unpack .../libssh2-1-dev_1.4.3-2ubuntu0.1_amd64.deb ...
  886. Unpacking libssh2-1-dev:amd64 (1.4.3-2ubuntu0.1) ...
  887. Selecting previously unselected package libtext-unidecode-perl.
  888. Preparing to unpack .../libtext-unidecode-perl_0.04-2_all.deb ...
  889. Unpacking libtext-unidecode-perl (0.04-2) ...
  890. Selecting previously unselected package libxml-namespacesupport-perl.
  891. Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ...
  892. Unpacking libxml-namespacesupport-perl (1.11-1) ...
  893. Selecting previously unselected package libxml-sax-base-perl.
  894. Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ...
  895. Unpacking libxml-sax-base-perl (1.07-1) ...
  896. Selecting previously unselected package libxml-sax-perl.
  897. Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2ubuntu1_all.deb ...
  898. Unpacking libxml-sax-perl (0.99+dfsg-2ubuntu1) ...
  899. Selecting previously unselected package libxml-libxml-perl.
  900. Preparing to unpack .../libxml-libxml-perl_2.0108+dfsg-1ubuntu0.1_amd64.deb ...
  901. Unpacking libxml-libxml-perl (2.0108+dfsg-1ubuntu0.1) ...
  902. Selecting previously unselected package qpdf.
  903. Preparing to unpack .../qpdf_5.1.1-1_amd64.deb ...
  904. Unpacking qpdf (5.1.1-1) ...
  905. Selecting previously unselected package texinfo.
  906. Preparing to unpack .../texinfo_5.2.0.dfsg.1-2_amd64.deb ...
  907. Unpacking texinfo (5.2.0.dfsg.1-2) ...
  908. Processing triggers for ccache (3.1.9-1) ...
  909. Updating symlinks in /usr/lib/ccache ...
  910. Setting up man-db (2.6.7.1-1ubuntu1) ...
  911. Building database of manual pages ...
  912. Setting up libmagickcore5:amd64 (8:6.7.7.10-6ubuntu3.6) ...
  913. Setting up libmagickwand5:amd64 (8:6.7.7.10-6ubuntu3.6) ...
  914. Setting up libmagickcore5-extra:amd64 (8:6.7.7.10-6ubuntu3.6) ...
  915. Setting up libmagickcore-dev (8:6.7.7.10-6ubuntu3.6) ...
  916. Setting up libmagickwand-dev (8:6.7.7.10-6ubuntu3.6) ...
  917. Setting up libmagick++5:amd64 (8:6.7.7.10-6ubuntu3.6) ...
  918. Setting up libqpdf13:amd64 (5.1.1-1) ...
  919. Setting up libssh2-1:amd64 (1.4.3-2ubuntu0.1) ...
  920. Setting up intltool-debian (0.35.0+20060710.1) ...
  921. Setting up po-debconf (1.0.16+nmu2ubuntu1) ...
  922. Setting up dh-apparmor (2.10.95-0ubuntu2.6~14.04.1) ...
  923. Setting up debhelper (9.20131227ubuntu1) ...
  924. Setting up liburi-perl (1.60-1) ...
  925. Setting up libencode-locale-perl (1.03-1) ...
  926. Setting up libhttp-date-perl (6.02-1) ...
  927. Setting up libfile-listing-perl (6.04-1) ...
  928. Setting up libhtml-tagset-perl (3.20-2) ...
  929. Setting up libhtml-parser-perl (3.71-1build1) ...
  930. Setting up libhtml-tree-perl (5.03-1) ...
  931. Setting up libio-html-perl (1.00-1) ...
  932. Setting up liblwp-mediatypes-perl (6.02-1) ...
  933. Setting up libhttp-message-perl (6.06-1) ...
  934. Setting up libhttp-cookies-perl (6.00-2) ...
  935. Setting up libhttp-negotiate-perl (6.00-2) ...
  936. Setting up libnet-ssleay-perl (1.58-1) ...
  937. Setting up libio-socket-ssl-perl (1.965-1ubuntu1) ...
  938. Setting up libnet-http-perl (6.06-1) ...
  939. Setting up libwww-robotrules-perl (6.01-1) ...
  940. Setting up python-scour (0.26-3build1) ...
  941. Setting up libgfortran-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.3) ...
  942. Setting up gfortran-4.8 (4.8.4-2ubuntu1~14.04.3) ...
  943. Setting up gfortran (4:4.8.2-1ubuntu6) ...
  944. update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
  945. Setting up libblas-dev (1.2.20110419-7) ...
  946. update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
  947. Setting up libintl-perl (1.23-1build1) ...
  948. Setting up liblapack-dev (3.5.0-2ubuntu1) ...
  949. update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
  950. Setting up libmagick++-dev (8:6.7.7.10-6ubuntu3.6) ...
  951. Setting up libssh2-1-dev:amd64 (1.4.3-2ubuntu0.1) ...
  952. Setting up libtext-unidecode-perl (0.04-2) ...
  953. Setting up libxml-namespacesupport-perl (1.11-1) ...
  954. Setting up libxml-sax-base-perl (1.07-1) ...
  955. Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ...
  956. update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
  957. update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
  958.  
  959. Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
  960. Setting up libxml-libxml-perl (2.0108+dfsg-1ubuntu0.1) ...
  961. update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
  962. update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
  963. update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
  964. Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
  965. Setting up qpdf (5.1.1-1) ...
  966. Setting up texinfo (5.2.0.dfsg.1-2) ...
  967. Setting up liblwp-protocol-https-perl (6.04-2ubuntu0.1) ...
  968. Setting up libwww-perl (6.05-2) ...
  969. Setting up libxml-parser-perl (2.41-1build3) ...
  970. Setting up intltool (0.50.2-2) ...
  971. Setting up dh-translations (121) ...
  972. Setting up cdbs (0.4.122ubuntu2) ...
  973. Processing triggers for libc-bin (2.19-0ubuntu6.9) ...
  974.  
  975. travis_time:end:0dc547c8:start=1492419746976414720,finish=1492419781365092090,duration=34388677370
  976. travis_time:start:16759ff2
  977. $ curl -fLo /tmp/R-3.3.3-$(lsb_release -cs).xz https://s3.amazonaws.com/rstudio-travis/R-3.3.3-$(lsb_release -cs).xz
  978. % Total % Received % Xferd Average Speed Time Time Time Current
  979. Dload Upload Total Spent Left Speed
  980.  
  981. 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
  982. 48 41.0M 48 20.0M 0 0 33.6M 0 0:00:01 --:--:-- 0:00:01 33.6M
  983. 100 41.0M 100 41.0M 0 0 30.5M 0 0:00:01 0:00:01 --:--:-- 30.5M
  984.  
  985. travis_time:end:16759ff2:start=1492419781370107310,finish=1492419782803071901,duration=1432964591
  986. travis_time:start:226530b4
  987. $ tar xJf /tmp/R-3.3.3-$(lsb_release -cs).xz -C ~
  988.  
  989. travis_time:end:226530b4:start=1492419782808710624,finish=1492419785935578111,duration=3126867487
  990. $ rm /tmp/R-3.3.3-$(lsb_release -cs).xz
  991. travis_time:start:021e4428
  992. $ sudo mkdir -p /usr/local/lib/R/site-library $R_LIBS_USER
  993.  
  994. travis_time:end:021e4428:start=1492419785985118764,finish=1492419785994779175,duration=9660411
  995. travis_time:start:0847e3d1
  996. $ sudo chmod 2777 /usr/local/lib/R /usr/local/lib/R/site-library $R_LIBS_USER
  997.  
  998. travis_time:end:0847e3d1:start=1492419785999361077,finish=1492419786008444899,duration=9083822
  999. travis_time:start:0fb67c10
  1000. $ echo 'options(repos = c(CRAN = "https://cloud.r-project.org"))' > ~/.Rprofile.site
  1001.  
  1002. travis_time:end:0fb67c10:start=1492419786013006765,finish=1492419786016774340,duration=3767575
  1003. travis_time:start:0581b9a2
  1004. $ curl -fLo /tmp/texlive.tar.gz https://github.com/jimhester/ubuntu-bin/releases/download/latest/texlive.tar.gz
  1005. % Total % Received % Xferd Average Speed Time Time Time Current
  1006. Dload Upload Total Spent Left Speed
  1007.  
  1008. 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
  1009. 100 590 0 590 0 0 12342 0 --:--:-- --:--:-- --:--:-- 12826
  1010.  
  1011. 91 79.6M 91 72.4M 0 0 74.4M 0 0:00:01 --:--:-- 0:00:01 74.4M
  1012. 100 79.6M 100 79.6M 0 0 67.6M 0 0:00:01 0:00:01 --:--:-- 35.2M
  1013.  
  1014. travis_time:end:0581b9a2:start=1492419786021301315,finish=1492419787211543004,duration=1190241689
  1015. travis_time:start:0a8138c2
  1016. $ tar xzf /tmp/texlive.tar.gz -C ~
  1017.  
  1018. travis_time:end:0a8138c2:start=1492419787216330820,finish=1492419788908551110,duration=1692220290
  1019. $ export PATH=/$HOME/texlive/bin/x86_64-linux:$PATH
  1020. travis_time:start:066be9a4
  1021. $ tlmgr update --self
  1022. TeX Live 2016 is frozen forever and will no
  1023. longer be updated. This happens in preparation for a new release.
  1024.  
  1025. If you're interested in helping to pretest the new release (when
  1026. pretests are available), please read http://tug.org/texlive/pretest.html.
  1027. Otherwise, just wait, and the new release will be ready in due time.
  1028. tlmgr: package repository http://ctan.sharelatex.com/tex-archive/systems/texlive/tlnet (verified)
  1029. tlmgr: saving backups to /home/travis/texlive/tlpkg/backups
  1030. [1/1, ??:??/??:??] update: texlive.infra [190k] (41280 -> 41476) ... done
  1031. tlmgr: package log updated: /home/travis/texlive/texmf-var/web2c/tlmgr.log
  1032. running mktexlsr ...
  1033. done running mktexlsr.
  1034.  
  1035. travis_time:end:066be9a4:start=1492419788914486989,finish=1492419792515935450,duration=3601448461
  1036. travis_time:start:266d3b4f
  1037. $ curl -fLo /tmp/pandoc-1.15.2-1-amd64.deb https://github.com/jgm/pandoc/releases/download/1.15.2/pandoc-1.15.2-1-amd64.deb
  1038. % Total % Received % Xferd Average Speed Time Time Time Current
  1039. Dload Upload Total Spent Left Speed
  1040.  
  1041. 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
  1042. 100 600 0 600 0 0 11502 0 --:--:-- --:--:-- --:--:-- 12000
  1043.  
  1044. 100 18.8M 100 18.8M 0 0 71.7M 0 --:--:-- --:--:-- --:--:-- 71.7M
  1045.  
  1046. travis_time:end:266d3b4f:start=1492419792520861727,finish=1492419792797423803,duration=276562076
  1047. travis_time:start:0171417c
  1048. $ sudo dpkg -i /tmp/pandoc-1.15.2-1-amd64.deb
  1049. Selecting previously unselected package pandoc.
  1050. (Reading database ...
  1051. (Reading database ... 5%
  1052. (Reading database ... 10%
  1053. (Reading database ... 15%
  1054. (Reading database ... 20%
  1055. (Reading database ... 25%
  1056. (Reading database ... 30%
  1057. (Reading database ... 35%
  1058. (Reading database ... 40%
  1059. (Reading database ... 45%
  1060. (Reading database ... 50%
  1061. (Reading database ... 55%
  1062. (Reading database ... 60%
  1063. (Reading database ... 65%
  1064. (Reading database ... 70%
  1065. (Reading database ... 75%
  1066. (Reading database ... 80%
  1067. (Reading database ... 85%
  1068. (Reading database ... 90%
  1069. (Reading database ... 95%
  1070. (Reading database ... 100%
  1071. (Reading database ... 72271 files and directories currently installed.)
  1072. Preparing to unpack /tmp/pandoc-1.15.2-1-amd64.deb ...
  1073. Unpacking pandoc (1.15.2-1) ...
  1074. Setting up pandoc (1.15.2-1) ...
  1075. Processing triggers for man-db (2.6.7.1-1ubuntu1) ...
  1076.  
  1077. travis_time:end:0171417c:start=1492419792802301349,finish=1492419793736592678,duration=934291329
  1078. travis_time:start:0521a8c8
  1079. $ sudo apt-get install -f
  1080.  
  1081. Reading package lists... 0%
  1082.  
  1083. Reading package lists... 0%
  1084.  
  1085. Reading package lists... 0%
  1086.  
  1087. Reading package lists... 0%
  1088.  
  1089. Reading package lists... 0%
  1090.  
  1091. Reading package lists... 0%
  1092.  
  1093. Reading package lists... 0%
  1094.  
  1095. Reading package lists... 0%
  1096.  
  1097. Reading package lists... 0%
  1098.  
  1099. Reading package lists... 0%
  1100.  
  1101. Reading package lists... 0%
  1102.  
  1103. Reading package lists... 0%
  1104.  
  1105. Reading package lists... 0%
  1106.  
  1107. Reading package lists... 0%
  1108.  
  1109. Reading package lists... 0%
  1110.  
  1111. Reading package lists... 0%
  1112.  
  1113. Reading package lists... 0%
  1114.  
  1115. Reading package lists... 0%
  1116.  
  1117. Reading package lists... 0%
  1118.  
  1119. Reading package lists... 0%
  1120.  
  1121. Reading package lists... 0%
  1122.  
  1123. Reading package lists... 0%
  1124.  
  1125. Reading package lists... 0%
  1126.  
  1127. Reading package lists... 0%
  1128.  
  1129. Reading package lists... 0%
  1130.  
  1131. Reading package lists... 0%
  1132.  
  1133. Reading package lists... 0%
  1134.  
  1135. Reading package lists... 0%
  1136.  
  1137. Reading package lists... 0%
  1138.  
  1139. Reading package lists... 0%
  1140.  
  1141. Reading package lists... 0%
  1142.  
  1143. Reading package lists... 0%
  1144.  
  1145. Reading package lists... 0%
  1146.  
  1147. Reading package lists... 0%
  1148.  
  1149. Reading package lists... 0%
  1150.  
  1151. Reading package lists... 0%
  1152.  
  1153. Reading package lists... 0%
  1154.  
  1155. Reading package lists... 0%
  1156.  
  1157. Reading package lists... 2%
  1158.  
  1159. Reading package lists... 54%
  1160.  
  1161. Reading package lists... 54%
  1162.  
  1163. Reading package lists... 55%
  1164.  
  1165. Reading package lists... 55%
  1166.  
  1167. Reading package lists... 60%
  1168.  
  1169. Reading package lists... 60%
  1170.  
  1171. Reading package lists... 61%
  1172.  
  1173. Reading package lists... 61%
  1174.  
  1175. Reading package lists... 72%
  1176.  
  1177. Reading package lists... 72%
  1178.  
  1179. Reading package lists... 72%
  1180.  
  1181. Reading package lists... 72%
  1182.  
  1183. Reading package lists... 73%
  1184.  
  1185. Reading package lists... 73%
  1186.  
  1187. Reading package lists... 73%
  1188.  
  1189. Reading package lists... 73%
  1190.  
  1191. Reading package lists... 73%
  1192.  
  1193. Reading package lists... 73%
  1194.  
  1195. Reading package lists... Done
  1196.  
  1197.  
  1198. Building dependency tree... 0%
  1199.  
  1200. Building dependency tree... 0%
  1201.  
  1202. Building dependency tree... 50%
  1203.  
  1204. Building dependency tree... 50%
  1205.  
  1206. Building dependency tree
  1207.  
  1208.  
  1209. Reading state information... 0%
  1210.  
  1211. Reading state information... 0%
  1212.  
  1213. Reading state information... Done
  1214.  
  1215. 0 upgraded, 0 newly installed, 0 to remove and 162 not upgraded.
  1216.  
  1217. travis_time:end:0521a8c8:start=1492419793741551379,finish=1492419795279145938,duration=1537594559
  1218. $ rm /tmp/pandoc-1.15.2-1-amd64.deb
  1219. travis_fold:end:R-install
  1220. 
  1221. Installing an SSH key from: default repository key
  1222. Key fingerprint: aa:f5:18:c0:3f:36:57:c1:ac:d1:13:68:02:10:23:bd
  1223.  
  1224. travis_fold:start:git.checkout
  1225. travis_time:start:16fe548b
  1226. $ git clone --depth=50 --branch=testing2 git@github.com:jstockwin/TransmissibilityEstimator.git jstockwin/TransmissibilityEstimator
  1227. Cloning into 'jstockwin/TransmissibilityEstimator'...
  1228. Warning: Permanently added the RSA host key for IP address '192.30.253.113' to the list of known hosts.
  1229.  
  1230. remote: Counting objects: 363, done.
  1231. remote: Compressing objects: 0% (1/158) 
  1232. remote: Compressing objects: 1% (2/158) 
  1233. remote: Compressing objects: 2% (4/158) 
  1234. remote: Compressing objects: 3% (5/158) 
  1235. remote: Compressing objects: 4% (7/158) 
  1236. remote: Compressing objects: 5% (8/158) 
  1237. remote: Compressing objects: 6% (10/158) 
  1238. remote: Compressing objects: 7% (12/158) 
  1239. remote: Compressing objects: 8% (13/158) 
  1240. remote: Compressing objects: 9% (15/158) 
  1241. remote: Compressing objects: 10% (16/158) 
  1242. remote: Compressing objects: 11% (18/158) 
  1243. remote: Compressing objects: 12% (19/158) 
  1244. remote: Compressing objects: 13% (21/158) 
  1245. remote: Compressing objects: 14% (23/158) 
  1246. remote: Compressing objects: 15% (24/158) 
  1247. remote: Compressing objects: 16% (26/158) 
  1248. remote: Compressing objects: 17% (27/158) 
  1249. remote: Compressing objects: 18% (29/158) 
  1250. remote: Compressing objects: 19% (31/158) 
  1251. remote: Compressing objects: 20% (32/158) 
  1252. remote: Compressing objects: 21% (34/158) 
  1253. remote: Compressing objects: 22% (35/158) 
  1254. remote: Compressing objects: 23% (37/158) 
  1255. remote: Compressing objects: 24% (38/158) 
  1256. remote: Compressing objects: 25% (40/158) 
  1257. remote: Compressing objects: 26% (42/158) 
  1258. remote: Compressing objects: 27% (43/158) 
  1259. remote: Compressing objects: 28% (45/158) 
  1260. remote: Compressing objects: 29% (46/158) 
  1261. remote: Compressing objects: 30% (48/158) 
  1262. remote: Compressing objects: 31% (49/158) 
  1263. remote: Compressing objects: 32% (51/158) 
  1264. remote: Compressing objects: 33% (53/158) 
  1265. remote: Compressing objects: 34% (54/158) 
  1266. remote: Compressing objects: 35% (56/158) 
  1267. remote: Compressing objects: 36% (57/158) 
  1268. remote: Compressing objects: 37% (59/158) 
  1269. remote: Compressing objects: 38% (61/158) 
  1270. remote: Compressing objects: 39% (62/158) 
  1271. remote: Compressing objects: 40% (64/158) 
  1272. remote: Compressing objects: 41% (65/158) 
  1273. remote: Compressing objects: 42% (67/158) 
  1274. remote: Compressing objects: 43% (68/158) 
  1275. remote: Compressing objects: 44% (70/158) 
  1276. remote: Compressing objects: 45% (72/158) 
  1277. remote: Compressing objects: 46% (73/158) 
  1278. remote: Compressing objects: 47% (75/158) 
  1279. remote: Compressing objects: 48% (76/158) 
  1280. remote: Compressing objects: 49% (78/158) 
  1281. remote: Compressing objects: 50% (79/158) 
  1282. remote: Compressing objects: 51% (81/158) 
  1283. remote: Compressing objects: 52% (83/158) 
  1284. remote: Compressing objects: 53% (84/158) 
  1285. remote: Compressing objects: 54% (86/158) 
  1286. remote: Compressing objects: 55% (87/158) 
  1287. remote: Compressing objects: 56% (89/158) 
  1288. remote: Compressing objects: 57% (91/158) 
  1289. remote: Compressing objects: 58% (92/158) 
  1290. remote: Compressing objects: 59% (94/158) 
  1291. remote: Compressing objects: 60% (95/158) 
  1292. remote: Compressing objects: 61% (97/158) 
  1293. remote: Compressing objects: 62% (98/158) 
  1294. remote: Compressing objects: 63% (100/158) 
  1295. remote: Compressing objects: 64% (102/158) 
  1296. remote: Compressing objects: 65% (103/158) 
  1297. remote: Compressing objects: 66% (105/158) 
  1298. remote: Compressing objects: 67% (106/158) 
  1299. remote: Compressing objects: 68% (108/158) 
  1300. remote: Compressing objects: 69% (110/158) 
  1301. remote: Compressing objects: 70% (111/158) 
  1302. remote: Compressing objects: 71% (113/158) 
  1303. remote: Compressing objects: 72% (114/158) 
  1304. remote: Compressing objects: 73% (116/158) 
  1305. remote: Compressing objects: 74% (117/158) 
  1306. remote: Compressing objects: 75% (119/158) 
  1307. remote: Compressing objects: 76% (121/158) 
  1308. remote: Compressing objects: 77% (122/158) 
  1309. remote: Compressing objects: 78% (124/158) 
  1310. remote: Compressing objects: 79% (125/158) 
  1311. remote: Compressing objects: 80% (127/158) 
  1312. remote: Compressing objects: 81% (128/158) 
  1313. remote: Compressing objects: 82% (130/158) 
  1314. remote: Compressing objects: 83% (132/158) 
  1315. remote: Compressing objects: 84% (133/158) 
  1316. remote: Compressing objects: 85% (135/158) 
  1317. remote: Compressing objects: 86% (136/158) 
  1318. remote: Compressing objects: 87% (138/158) 
  1319. remote: Compressing objects: 88% (140/158) 
  1320. remote: Compressing objects: 89% (141/158) 
  1321. remote: Compressing objects: 90% (143/158) 
  1322. remote: Compressing objects: 91% (144/158) 
  1323. remote: Compressing objects: 92% (146/158) 
  1324. remote: Compressing objects: 93% (147/158) 
  1325. remote: Compressing objects: 94% (149/158) 
  1326. remote: Compressing objects: 95% (151/158) 
  1327. remote: Compressing objects: 96% (152/158) 
  1328. remote: Compressing objects: 97% (154/158) 
  1329. remote: Compressing objects: 98% (155/158) 
  1330. remote: Compressing objects: 99% (157/158) 
  1331. remote: Compressing objects: 100% (158/158) 
  1332. remote: Compressing objects: 100% (158/158), done.
  1333. Receiving objects: 0% (1/363)
  1334. Receiving objects: 1% (4/363)
  1335. Receiving objects: 2% (8/363)
  1336. Receiving objects: 3% (11/363)
  1337. Receiving objects: 4% (15/363)
  1338. Receiving objects: 5% (19/363)
  1339. Receiving objects: 6% (22/363)
  1340. Receiving objects: 7% (26/363)
  1341. Receiving objects: 8% (30/363)
  1342. Receiving objects: 9% (33/363)
  1343. Receiving objects: 10% (37/363)
  1344. Receiving objects: 11% (40/363)
  1345. Receiving objects: 12% (44/363)
  1346. Receiving objects: 13% (48/363)
  1347. Receiving objects: 14% (51/363)
  1348. Receiving objects: 15% (55/363)
  1349. Receiving objects: 16% (59/363)
  1350. Receiving objects: 17% (62/363)
  1351. Receiving objects: 18% (66/363)
  1352. Receiving objects: 19% (69/363)
  1353. Receiving objects: 20% (73/363)
  1354. Receiving objects: 21% (77/363)
  1355. Receiving objects: 22% (80/363)
  1356. Receiving objects: 23% (84/363)
  1357. Receiving objects: 24% (88/363)
  1358. Receiving objects: 25% (91/363)
  1359. Receiving objects: 26% (95/363)
  1360. Receiving objects: 27% (99/363)
  1361. Receiving objects: 28% (102/363)
  1362. Receiving objects: 29% (106/363)
  1363. Receiving objects: 30% (109/363)
  1364. Receiving objects: 31% (113/363)
  1365. Receiving objects: 32% (117/363)
  1366. Receiving objects: 33% (120/363)
  1367. Receiving objects: 34% (124/363)
  1368. Receiving objects: 35% (128/363)
  1369. Receiving objects: 36% (131/363)
  1370. Receiving objects: 37% (135/363)
  1371. Receiving objects: 38% (138/363)
  1372. Receiving objects: 39% (142/363)
  1373. Receiving objects: 40% (146/363)
  1374. Receiving objects: 41% (149/363)
  1375. Receiving objects: 42% (153/363)
  1376. Receiving objects: 43% (157/363)
  1377. Receiving objects: 44% (160/363)
  1378. Receiving objects: 45% (164/363)
  1379. Receiving objects: 46% (167/363)
  1380. Receiving objects: 47% (171/363)
  1381. Receiving objects: 48% (175/363)
  1382. Receiving objects: 49% (178/363)
  1383. Receiving objects: 50% (182/363)
  1384. Receiving objects: 51% (186/363)
  1385. Receiving objects: 52% (189/363)
  1386. Receiving objects: 53% (193/363)
  1387. Receiving objects: 54% (197/363)
  1388. Receiving objects: 55% (200/363)
  1389. Receiving objects: 56% (204/363)
  1390. Receiving objects: 57% (207/363)
  1391. Receiving objects: 58% (211/363)
  1392. Receiving objects: 59% (215/363)
  1393. Receiving objects: 60% (218/363)
  1394. Receiving objects: 61% (222/363)
  1395. Receiving objects: 62% (226/363)
  1396. Receiving objects: 63% (229/363)
  1397. Receiving objects: 64% (233/363)
  1398. Receiving objects: 65% (236/363)
  1399. Receiving objects: 66% (240/363)
  1400. Receiving objects: 67% (244/363)
  1401. Receiving objects: 68% (247/363)
  1402. Receiving objects: 69% (251/363)
  1403. Receiving objects: 70% (255/363)
  1404. Receiving objects: 71% (258/363)
  1405. Receiving objects: 72% (262/363)
  1406. Receiving objects: 73% (265/363)
  1407. Receiving objects: 74% (269/363)
  1408. Receiving objects: 75% (273/363)
  1409. Receiving objects: 76% (276/363)
  1410. Receiving objects: 77% (280/363)
  1411. Receiving objects: 78% (284/363)
  1412. Receiving objects: 79% (287/363)
  1413. Receiving objects: 80% (291/363)
  1414. Receiving objects: 81% (295/363)
  1415. Receiving objects: 82% (298/363)
  1416. Receiving objects: 83% (302/363)
  1417. Receiving objects: 84% (305/363)
  1418. Receiving objects: 85% (309/363)
  1419. Receiving objects: 86% (313/363)
  1420. Receiving objects: 87% (316/363)
  1421. Receiving objects: 88% (320/363)
  1422. Receiving objects: 89% (324/363)
  1423. Receiving objects: 90% (327/363)
  1424. Receiving objects: 91% (331/363)
  1425. Receiving objects: 92% (334/363)
  1426. Receiving objects: 93% (338/363)
  1427. Receiving objects: 94% (342/363)
  1428. remote: Total 363 (delta 205), reused 338 (delta 188), pack-reused 0
  1429. Receiving objects: 95% (345/363)
  1430. Receiving objects: 96% (349/363)
  1431. Receiving objects: 97% (353/363)
  1432. Receiving objects: 98% (356/363)
  1433. Receiving objects: 99% (360/363)
  1434. Receiving objects: 100% (363/363)
  1435. Receiving objects: 100% (363/363), 5.09 MiB | 0 bytes/s, done.
  1436. Resolving deltas: 0% (0/205)
  1437. Resolving deltas: 1% (3/205)
  1438. Resolving deltas: 2% (5/205)
  1439. Resolving deltas: 4% (10/205)
  1440. Resolving deltas: 7% (15/205)
  1441. Resolving deltas: 16% (34/205)
  1442. Resolving deltas: 19% (39/205)
  1443. Resolving deltas: 21% (44/205)
  1444. Resolving deltas: 22% (46/205)
  1445. Resolving deltas: 29% (60/205)
  1446. Resolving deltas: 30% (62/205)
  1447. Resolving deltas: 31% (65/205)
  1448. Resolving deltas: 33% (68/205)
  1449. Resolving deltas: 36% (75/205)
  1450. Resolving deltas: 37% (76/205)
  1451. Resolving deltas: 50% (104/205)
  1452. Resolving deltas: 64% (133/205)
  1453. Resolving deltas: 65% (134/205)
  1454. Resolving deltas: 67% (139/205)
  1455. Resolving deltas: 74% (152/205)
  1456. Resolving deltas: 80% (165/205)
  1457. Resolving deltas: 94% (193/205)
  1458. Resolving deltas: 96% (197/205)
  1459. Resolving deltas: 97% (199/205)
  1460. Resolving deltas: 100% (205/205)
  1461. Resolving deltas: 100% (205/205), done.
  1462. Checking connectivity... done.
  1463.  
  1464. travis_time:end:16fe548b:start=1492419795306252464,finish=1492419796901406920,duration=1595154456
  1465. $ cd jstockwin/TransmissibilityEstimator
  1466. $ git checkout -qf 49523c6efe6a0bbf631c5f0fe68793082e2ced79
  1467. travis_fold:end:git.checkout
  1468. 
  1469. Setting environment variables from repository settings
  1470. $ export SAUCE_USERNAME=[secure]
  1471. $ export SAUCE_ACCESS_KEY=[secure]
  1472.  
  1473. Setting environment variables from .travis.yml
  1474. $ export NOT_CRAN=true
  1475.  
  1476. travis_fold:start:cache.1
  1477. Setting up build cache
  1478. $ export CASHER_DIR=$HOME/.casher
  1479. travis_time:start:18059f58
  1480. $ Installing caching utilities
  1481.  
  1482. travis_time:end:18059f58:start=1492419801603607400,finish=1492419801640451078,duration=36843678
  1483. travis_time:start:297b40ae
  1484. 
  1485. travis_time:end:297b40ae:start=1492419801647402095,finish=1492419801651763981,duration=4361886
  1486. travis_time:start:0338ba80
  1487. attempting to download cache archive
  1488. fetching testing2/cache-linux-trusty-340559185396edaba4e26eecaab6031518835513680f372fceb2c682698e0aea--R-3.3.3.tgz
  1489. found cache
  1490.  
  1491. travis_time:end:0338ba80:start=1492419801656813867,finish=1492419803743789909,duration=2086976042
  1492. travis_fold:end:cache.1
  1493. travis_fold:start:package
  1494. Setting up package cache
  1495. travis_time:start:1ba28d0d
  1496. 
  1497. travis_time:end:1ba28d0d:start=1492419803749295171,finish=1492419803753449083,duration=4153912
  1498. travis_time:start:14d4159e
  1499. adding /home/travis/R/Library to cache
  1500. creating directory /home/travis/R/Library
  1501.  
  1502. travis_time:end:14d4159e:start=1492419803758545047,finish=1492419807011495189,duration=3252950142
  1503. travis_fold:end:package
  1504. travis_fold:start:R-session-info
  1505. R session information
  1506. $ Rscript -e 'sessionInfo()'
  1507. R version 3.3.3 (2017-01-27)
  1508. Platform: x86_64-pc-linux-gnu (64-bit)
  1509. Running under: Ubuntu 14.04.5 LTS
  1510.  
  1511. locale:
  1512. [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
  1513. [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
  1514. [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
  1515. [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
  1516. [9] LC_ADDRESS=C LC_TELEPHONE=C
  1517. [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
  1518.  
  1519. attached base packages:
  1520. [1] stats graphics grDevices utils datasets base
  1521. travis_fold:end:R-session-info
  1522. travis_fold:start:install.1
  1523. travis_time:start:048b83a0
  1524. $ Rscript -e "install.packages(c('shiny', 'RSelenium', 'testthat', 'devtools', 'MCMCpack', 'shinyjs', 'ggplot2'))"
  1525. Installing packages into ‘/home/travis/R/Library’
  1526. (as ‘lib’ is unspecified)
  1527. trying URL 'https://cloud.r-project.org/src/contrib/shiny_1.0.1.tar.gz'
  1528. Content type 'application/x-gzip' length 2272409 bytes (2.2 MB)
  1529. ==================================================
  1530. downloaded 2.2 MB
  1531.  
  1532. trying URL 'https://cloud.r-project.org/src/contrib/RSelenium_1.7.1.tar.gz'
  1533. Content type 'application/x-gzip' length 4303990 bytes (4.1 MB)
  1534. ==================================================
  1535. downloaded 4.1 MB
  1536.  
  1537. trying URL 'https://cloud.r-project.org/src/contrib/testthat_1.0.2.tar.gz'
  1538. Content type 'application/x-gzip' length 147298 bytes (143 KB)
  1539. ==================================================
  1540. downloaded 143 KB
  1541.  
  1542. trying URL 'https://cloud.r-project.org/src/contrib/devtools_1.12.0.tar.gz'
  1543. Content type 'application/x-gzip' length 466618 bytes (455 KB)
  1544. ==================================================
  1545. downloaded 455 KB
  1546.  
  1547. trying URL 'https://cloud.r-project.org/src/contrib/MCMCpack_1.3-9.tar.gz'
  1548. Content type 'application/x-gzip' length 551460 bytes (538 KB)
  1549. ==================================================
  1550. downloaded 538 KB
  1551.  
  1552. trying URL 'https://cloud.r-project.org/src/contrib/shinyjs_0.9.tar.gz'
  1553. Content type 'application/x-gzip' length 977896 bytes (954 KB)
  1554. ==================================================
  1555. downloaded 954 KB
  1556.  
  1557. trying URL 'https://cloud.r-project.org/src/contrib/ggplot2_2.2.1.tar.gz'
  1558. Content type 'application/x-gzip' length 2213308 bytes (2.1 MB)
  1559. ==================================================
  1560. downloaded 2.1 MB
  1561.  
  1562. * installing *source* package ‘shiny’ ...
  1563. ** package ‘shiny’ successfully unpacked and MD5 sums checked
  1564. ** R
  1565. ** inst
  1566. ** preparing package for lazy loading
  1567. ** help
  1568. *** installing help indices
  1569. ** building package indices
  1570. ** testing if installed package can be loaded
  1571. * DONE (shiny)
  1572. * installing *source* package ‘RSelenium’ ...
  1573. ** package ‘RSelenium’ successfully unpacked and MD5 sums checked
  1574. ** R
  1575. ** demo
  1576. ** inst
  1577. ** preparing package for lazy loading
  1578. ** help
  1579. *** installing help indices
  1580. ** building package indices
  1581. ** installing vignettes
  1582. ** testing if installed package can be loaded
  1583. * DONE (RSelenium)
  1584. * installing *source* package ‘testthat’ ...
  1585. ** package ‘testthat’ successfully unpacked and MD5 sums checked
  1586. ** libs
  1587. gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/home/travis/R-bin/include -fpic -g -O2 -c label.c -o label.o
  1588. gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/home/travis/R-bin/include -fpic -g -O2 -c reassign.c -o reassign.o
  1589. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/home/travis/R-bin/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o
  1590. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/home/travis/R-bin/include -fpic -g -O2 -c test-example.cpp -o test-example.o
  1591. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/home/travis/R-bin/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o
  1592. g++ -shared -L/home/travis/R-bin/lib -o testthat.so label.o reassign.o test-catch.o test-example.o test-runner.o
  1593. installing to /home/travis/R/Library/testthat/libs
  1594. ** R
  1595. ** inst
  1596. ** preparing package for lazy loading
  1597. ** help
  1598. *** installing help indices
  1599. ** building package indices
  1600. ** testing if installed package can be loaded
  1601. * DONE (testthat)
  1602. * installing *source* package ‘devtools’ ...
  1603. ** package ‘devtools’ successfully unpacked and MD5 sums checked
  1604. ** libs
  1605. gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -fpic -g -O2 -c devtools.c -o devtools.o
  1606. gcc -std=gnu99 -shared -L/home/travis/R-bin/lib -o devtools.so devtools.o
  1607. installing to /home/travis/R/Library/devtools/libs
  1608. ** R
  1609. ** inst
  1610. ** preparing package for lazy loading
  1611. ** help
  1612. *** installing help indices
  1613. ** building package indices
  1614. ** installing vignettes
  1615. ** testing if installed package can be loaded
  1616. * DONE (devtools)
  1617. * installing *source* package ‘MCMCpack’ ...
  1618. ** package ‘MCMCpack’ successfully unpacked and MD5 sums checked
  1619. checking whether the C++ compiler works... yes
  1620. checking for C++ compiler default output file name... a.out
  1621. checking for suffix of executables...
  1622. checking whether we are cross compiling... no
  1623. checking for suffix of object files... o
  1624. checking whether we are using the GNU C++ compiler... yes
  1625. checking whether g++ accepts -g... yes
  1626. checking for gcc... gcc
  1627. checking whether we are using the GNU C compiler... yes
  1628. checking whether gcc accepts -g... yes
  1629. checking for gcc option to accept ISO C89... none needed
  1630. checking how to run the C preprocessor... gcc -E
  1631. checking for grep that handles long lines and -e... /bin/grep
  1632. checking for egrep... /bin/grep -E
  1633. checking for ANSI C header files... yes
  1634. checking for sys/types.h... yes
  1635. checking for sys/stat.h... yes
  1636. checking for stdlib.h... yes
  1637. checking for string.h... yes
  1638. checking for memory.h... yes
  1639. checking for strings.h... yes
  1640. checking for inttypes.h... yes
  1641. checking for stdint.h... yes
  1642. checking for unistd.h... yes
  1643. checking ieeefp.h usability... no
  1644. checking ieeefp.h presence... no
  1645. checking for ieeefp.h... no
  1646. checking for trunc... no
  1647. configure: creating ./config.status
  1648. config.status: creating src/Makevars
  1649. ** libs
  1650. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c HMMmultivariateGaussian.cc -o HMMmultivariateGaussian.o
  1651. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c HMMpanelFE.cc -o HMMpanelFE.o
  1652. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c HMMpanelRE.cc -o HMMpanelRE.o
  1653. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCSVDreg.cc -o MCMCSVDreg.o
  1654. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCbinaryChange.cc -o MCMCbinaryChange.o
  1655. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCdynamicEI.cc -o MCMCdynamicEI.o
  1656. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCdynamicIRT1d-b.cc -o MCMCdynamicIRT1d-b.o
  1657. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCdynamicIRT1d.cc -o MCMCdynamicIRT1d.o
  1658. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCfactanal.cc -o MCMCfactanal.o
  1659. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMChierBetaBinom.cc -o MCMChierBetaBinom.o
  1660. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMChierEI.cc -o MCMChierEI.o
  1661. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMChlogit.cc -o MCMChlogit.o
  1662. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMChpoisson.cc -o MCMChpoisson.o
  1663. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMChregress.cc -o MCMChregress.o
  1664. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCirt1d.cc -o MCMCirt1d.o
  1665. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCirtHier1d.cc -o MCMCirtHier1d.o
  1666. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCirtKdHet.cc -o MCMCirtKdHet.o
  1667. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCirtKdRob.cc -o MCMCirtKdRob.o
  1668. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMClogit.cc -o MCMClogit.o
  1669. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMClogituserprior.cc -o MCMClogituserprior.o
  1670. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCmetrop1R.cc -o MCMCmetrop1R.o
  1671. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCmixfactanal.cc -o MCMCmixfactanal.o
  1672. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCmnlMH.cc -o MCMCmnlMH.o
  1673. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCmnlslice.cc -o MCMCmnlslice.o
  1674. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCoprobit.cc -o MCMCoprobit.o
  1675. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCoprobitChange.cc -o MCMCoprobitChange.o
  1676. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCordfactanal.cc -o MCMCordfactanal.o
  1677. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCpoisson.cc -o MCMCpoisson.o
  1678. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCpoissonChange.cc -o MCMCpoissonChange.o
  1679. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCprobit.cc -o MCMCprobit.o
  1680. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCprobitChange.cc -o MCMCprobitChange.o
  1681. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCprobitres.cc -o MCMCprobitres.o
  1682. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCquantreg.cc -o MCMCquantreg.o
  1683. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCregress.cc -o MCMCregress.o
  1684. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCregressChange.cc -o MCMCregressChange.o
  1685. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCresidualBreakAnalysis.cc -o MCMCresidualBreakAnalysis.o
  1686. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c MCMCtobit.cc -o MCMCtobit.o
  1687. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c SSVSquantreg.cc -o SSVSquantreg.o
  1688. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -I/home/travis/R-bin/include -fpic -g -O2 -c lecuyer.cc -o lecuyer.o
  1689. g++ -shared -L/home/travis/R-bin/lib -o MCMCpack.so HMMmultivariateGaussian.o HMMpanelFE.o HMMpanelRE.o MCMCSVDreg.o MCMCbinaryChange.o MCMCdynamicEI.o MCMCdynamicIRT1d-b.o MCMCdynamicIRT1d.o MCMCfactanal.o MCMChierBetaBinom.o MCMChierEI.o MCMChlogit.o MCMChpoisson.o MCMChregress.o MCMCirt1d.o MCMCirtHier1d.o MCMCirtKdHet.o MCMCirtKdRob.o MCMClogit.o MCMClogituserprior.o MCMCmetrop1R.o MCMCmixfactanal.o MCMCmnlMH.o MCMCmnlslice.o MCMCoprobit.o MCMCoprobitChange.o MCMCordfactanal.o MCMCpoisson.o MCMCpoissonChange.o MCMCprobit.o MCMCprobitChange.o MCMCprobitres.o MCMCquantreg.o MCMCregress.o MCMCregressChange.o MCMCresidualBreakAnalysis.o MCMCtobit.o SSVSquantreg.o lecuyer.o
  1690. installing to /home/travis/R/Library/MCMCpack/libs
  1691. ** R
  1692. ** data
  1693. ** inst
  1694. ** preparing package for lazy loading
  1695. ** help
  1696. *** installing help indices
  1697. ** building package indices
  1698. ** testing if installed package can be loaded
  1699. * DONE (MCMCpack)
  1700. * installing *source* package ‘ggplot2’ ...
  1701. ** package ‘ggplot2’ successfully unpacked and MD5 sums checked
  1702. ** R
  1703. ** data
  1704. *** moving datasets to lazyload DB
  1705. ** inst
  1706. ** preparing package for lazy loading
  1707. ** help
  1708. *** installing help indices
  1709. ** building package indices
  1710. ** installing vignettes
  1711. ** testing if installed package can be loaded
  1712. * DONE (ggplot2)
  1713. * installing *source* package ‘shinyjs’ ...
  1714. ** package ‘shinyjs’ successfully unpacked and MD5 sums checked
  1715. ** R
  1716. ** inst
  1717. ** preparing package for lazy loading
  1718. ** help
  1719. *** installing help indices
  1720. ** building package indices
  1721. ** installing vignettes
  1722. ** testing if installed package can be loaded
  1723. * DONE (shinyjs)
  1724.  
  1725. The downloaded source packages are in
  1726. ‘/tmp/RtmpnPpKps/downloaded_packages’
  1727.  
  1728. travis_time:end:048b83a0:start=1492419807246275716,finish=1492419969105738403,duration=161859462687
  1729. travis_fold:end:install.1
  1730. travis_fold:start:install.2
  1731. travis_time:start:2939caea
  1732. $ Rscript -e "install.packages(c('graphics', 'grid', 'gridExtra', 'plotly', 'plyr', 'reshape2', 'stats', 'future'))"
  1733. Installing packages into ‘/home/travis/R/Library’
  1734. (as ‘lib’ is unspecified)
  1735. trying URL 'https://cloud.r-project.org/src/contrib/gridExtra_2.2.1.tar.gz'
  1736. Content type 'application/x-gzip' length 459488 bytes (448 KB)
  1737. ==================================================
  1738. downloaded 448 KB
  1739.  
  1740. trying URL 'https://cloud.r-project.org/src/contrib/plotly_4.5.6.tar.gz'
  1741. Content type 'application/x-gzip' length 735400 bytes (718 KB)
  1742. ==================================================
  1743. downloaded 718 KB
  1744.  
  1745. trying URL 'https://cloud.r-project.org/src/contrib/plyr_1.8.4.tar.gz'
  1746. Content type 'application/x-gzip' length 392451 bytes (383 KB)
  1747. ==================================================
  1748. downloaded 383 KB
  1749.  
  1750. trying URL 'https://cloud.r-project.org/src/contrib/reshape2_1.4.2.tar.gz'
  1751. Content type 'application/x-gzip' length 34688 bytes (33 KB)
  1752. ==================================================
  1753. downloaded 33 KB
  1754.  
  1755. trying URL 'https://cloud.r-project.org/src/contrib/future_1.4.0.tar.gz'
  1756. Content type 'application/x-gzip' length 183272 bytes (178 KB)
  1757. ==================================================
  1758. downloaded 178 KB
  1759.  
  1760. * installing *source* package ‘gridExtra’ ...
  1761. ** package ‘gridExtra’ successfully unpacked and MD5 sums checked
  1762. ** R
  1763. ** inst
  1764. ** preparing package for lazy loading
  1765. ** help
  1766. *** installing help indices
  1767. ** building package indices
  1768. ** installing vignettes
  1769. ** testing if installed package can be loaded
  1770. * DONE (gridExtra)
  1771. * installing *source* package ‘plotly’ ...
  1772. ** package ‘plotly’ successfully unpacked and MD5 sums checked
  1773. ** R
  1774. ** data
  1775. *** moving datasets to lazyload DB
  1776. ** inst
  1777. ** preparing package for lazy loading
  1778. ** help
  1779. *** installing help indices
  1780. ** building package indices
  1781. ** testing if installed package can be loaded
  1782. * DONE (plotly)
  1783. * installing *source* package ‘plyr’ ...
  1784. ** package ‘plyr’ successfully unpacked and MD5 sums checked
  1785. ** libs
  1786. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -I"/home/travis/R/Library/Rcpp/include" -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
  1787. gcc -std=gnu99 -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -I"/home/travis/R/Library/Rcpp/include" -fpic -g -O2 -c loop_apply.c -o loop_apply.o
  1788. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -I"/home/travis/R/Library/Rcpp/include" -fpic -g -O2 -c split-numeric.cpp -o split-numeric.o
  1789. g++ -shared -L/home/travis/R-bin/lib -o plyr.so RcppExports.o loop_apply.o split-numeric.o
  1790. installing to /home/travis/R/Library/plyr/libs
  1791. ** R
  1792. ** data
  1793. *** moving datasets to lazyload DB
  1794. ** inst
  1795. ** preparing package for lazy loading
  1796. ** help
  1797. *** installing help indices
  1798. ** building package indices
  1799. ** testing if installed package can be loaded
  1800. * DONE (plyr)
  1801. * installing *source* package ‘future’ ...
  1802. ** package ‘future’ successfully unpacked and MD5 sums checked
  1803. ** R
  1804. ** demo
  1805. ** inst
  1806. ** preparing package for lazy loading
  1807. ** help
  1808. *** installing help indices
  1809. ** building package indices
  1810. ** installing vignettes
  1811. ** testing if installed package can be loaded
  1812. * DONE (future)
  1813. * installing *source* package ‘reshape2’ ...
  1814. ** package ‘reshape2’ successfully unpacked and MD5 sums checked
  1815. ** libs
  1816. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -I"/home/travis/R/Library/Rcpp/include" -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
  1817. g++ -I/home/travis/R-bin/lib/R/include -DNDEBUG -I/home/travis/R-bin/include -I"/home/travis/R/Library/Rcpp/include" -fpic -g -O2 -c melt.cpp -o melt.o
  1818. g++ -shared -L/home/travis/R-bin/lib -o reshape2.so RcppExports.o melt.o
  1819. installing to /home/travis/R/Library/reshape2/libs
  1820. ** R
  1821. ** data
  1822. *** moving datasets to lazyload DB
  1823. ** inst
  1824. ** preparing package for lazy loading
  1825. ** help
  1826. *** installing help indices
  1827. ** building package indices
  1828. ** testing if installed package can be loaded
  1829. * DONE (reshape2)
  1830.  
  1831. The downloaded source packages are in
  1832. ‘/tmp/RtmpcXBJrd/downloaded_packages’
  1833. Warning messages:
  1834. 1: packages ‘graphics’, ‘grid’, ‘stats’ are not available (for R version 3.3.3)
  1835. 2: packages ‘graphics’, ‘grid’, ‘stats’ are base packages, and should not be updated
  1836.  
  1837. travis_time:end:2939caea:start=1492419969111170617,finish=1492419991621267311,duration=22510096694
  1838. travis_fold:end:install.2
  1839. travis_fold:start:sauce_connect.start
  1840. Starting Sauce Connect
  1841. travis_time:start:19c20be6
  1842. $ travis_start_sauce_connect
  1843. Using temp dir /tmp/sc.cLCQ
  1844. /tmp/sc.cLCQ ~/build/jstockwin/TransmissibilityEstimator
  1845. Downloading Sauce Connect
  1846. --2017-04-17 09:06:31-- http://saucelabs.com/downloads/sc-4.4.5-linux.tar.gz
  1847. Resolving saucelabs.com (saucelabs.com)... 162.222.75.243
  1848. Connecting to saucelabs.com (saucelabs.com)|162.222.75.243|:80... connected.
  1849. HTTP request sent, awaiting response... 200 OK
  1850. Length: 6178252 (5.9M) [binary/octet-stream]
  1851. Saving to: ‘sc-4.4.5-linux.tar.gz’
  1852.  
  1853.  
  1854. 0% [ ] 0 --.-K/s
  1855. 1% [ ] 106,129 472KB/s
  1856. 14% [====> ] 901,513 1.96MB/s
  1857. 100%[======================================>] 6,178,252 9.69MB/s in 0.6s
  1858.  
  1859. 2017-04-17 09:06:32 (9.69 MB/s) - ‘sc-4.4.5-linux.tar.gz’ saved [6178252/6178252]
  1860.  
  1861. Extracting Sauce Connect
  1862. Waiting for Sauce Connect readyfile
  1863. 17 Apr 09:06:32 - Sauce Connect 4.4.5, build 3472 1cbd9ed -dirty
  1864. 17 Apr 09:06:32 - Using CA certificate bundle /etc/ssl/certs/ca-certificates.crt.
  1865. 17 Apr 09:06:32 - Using CA certificate verify path /etc/ssl/certs.
  1866. 17 Apr 09:06:32 - Starting up; pid 32553
  1867. 17 Apr 09:06:32 - Command line arguments: sc-4.4.5-linux//bin/sc -i 54.1 -f sauce-connect-ready-17699 -l /home/travis/sauce-connect.log
  1868. 17 Apr 09:06:32 - Log file: /home/travis/sauce-connect.log
  1869. 17 Apr 09:06:32 - Pid file: /tmp/sc_client-54.1.pid
  1870. 17 Apr 09:06:32 - Timezone: UTC GMT offset: 0h
  1871. 17 Apr 09:06:32 - Using no proxy for connecting to Sauce Labs REST API.
  1872. 17 Apr 09:06:33 - Started scproxy on port 33803.
  1873. 17 Apr 09:06:33 - Please wait for 'you may start your tests' to start your tests.
  1874. 17 Apr 09:06:47 - Provisioned tunnel:91ac76acd3dd450b8170a07e50f8db9d
  1875. 17 Apr 09:06:47 - Using no proxy for connecting to tunnel VM.
  1876. 17 Apr 09:06:47 - Starting Selenium listener...
  1877. 17 Apr 09:06:47 - Establishing secure TLS connection to tunnel...
  1878. 17 Apr 09:06:48 - Selenium listener started on port 4445.
  1879. 17 Apr 09:06:49 - Sauce Connect is up, you may start your tests.
  1880. ~/build/jstockwin/TransmissibilityEstimator
  1881.  
  1882. travis_time:end:19c20be6:start=1492419991626863556,finish=1492420009463423698,duration=17836560142
  1883. travis_fold:end:sauce_connect.start
  1884. travis_fold:start:before_script.1
  1885. travis_time:start:20dd2b52
  1886. $ R -e "shiny::runApp(port=3000)" &
  1887.  
  1888. travis_time:end:20dd2b52:start=1492420009469307015,finish=1492420009474152377,duration=4845362
  1889. travis_fold:end:before_script.1
  1890. travis_fold:start:before_script.2
  1891. travis_time:start:014c1fee
  1892. $ sleep 10
  1893.  
  1894. R version 3.3.3 (2017-01-27) -- "Another Canoe"
  1895. Copyright (C) 2017 The R Foundation for Statistical Computing
  1896. Platform: x86_64-pc-linux-gnu (64-bit)
  1897.  
  1898. R is free software and comes with ABSOLUTELY NO WARRANTY.
  1899. You are welcome to redistribute it under certain conditions.
  1900. Type 'license()' or 'licence()' for distribution details.
  1901.  
  1902. Natural language support but running in an English locale
  1903.  
  1904. R is a collaborative project with many contributors.
  1905. Type 'contributors()' for more information and
  1906. 'citation()' on how to cite R or R packages in publications.
  1907.  
  1908. Type 'demo()' for some demos, 'help()' for on-line help, or
  1909. 'help.start()' for an HTML browser interface to help.
  1910. Type 'q()' to quit R.
  1911.  
  1912. > shiny::runApp(port=3000)
  1913. Loading required package: shiny
  1914.  
  1915. Listening on http://127.0.0.1:3000
  1916.  
  1917. travis_time:end:014c1fee:start=1492420009479358808,finish=1492420019485810322,duration=10006451514
  1918. travis_fold:end:before_script.2
  1919. travis_time:start:0e15bc02
  1920. $ R -e "testthat::test_dir('tests', reporter='stop')"
  1921.  
  1922. R version 3.3.3 (2017-01-27) -- "Another Canoe"
  1923. Copyright (C) 2017 The R Foundation for Statistical Computing
  1924. Platform: x86_64-pc-linux-gnu (64-bit)
  1925.  
  1926. R is free software and comes with ABSOLUTELY NO WARRANTY.
  1927. You are welcome to redistribute it under certain conditions.
  1928. Type 'license()' or 'licence()' for distribution details.
  1929.  
  1930. Natural language support but running in an English locale
  1931.  
  1932. R is a collaborative project with many contributors.
  1933. Type 'contributors()' for more information and
  1934. 'citation()' on how to cite R or R packages in publications.
  1935.  
  1936. Type 'demo()' for some demos, 'help()' for on-line help, or
  1937. 'help.start()' for an HTML browser interface to help.
  1938. Type 'q()' to quit R.
  1939.  
  1940. > testthat::test_dir('tests', reporter='stop')
  1941. No encoding supplied: defaulting to UTF-8.
  1942. Error in resContent[["status"]] : subscript out of bounds
  1943. Calls: <Anonymous> ... eval -> eval -> <Anonymous> -> queryRD -> checkStatus
  1944. Execution halted
  1945.  
  1946. travis_time:end:0e15bc02:start=1492420019491680264,finish=1492420020180138322,duration=688458058
  1947. 
  1948. The command "R -e "testthat::test_dir('tests', reporter='stop')"" exited with 1.
  1949. travis_fold:start:cache.2
  1950. store build cache
  1951. travis_time:start:013e3b58
  1952. 
  1953. travis_time:end:013e3b58:start=1492420020186159725,finish=1492420020190523120,duration=4363395
  1954. travis_time:start:044ada71
  1955. change detected (content changed, file is created, or file is deleted):
  1956. /home/travis/R/Library/devtools/DESCRIPTION
  1957. /home/travis/R/Library/devtools/help/devtools.rdb
  1958. /home/travis/R/Library/devtools/help/devtools.rdx
  1959. /home/travis/R/Library/devtools/help/paths.rds
  1960. /home/travis/R/Library/devtools/libs/devtools.so
  1961. /home/travis/R/Library/devtools/Meta/package.rds
  1962. /home/travis/R/Library/future/DESCRIPTION
  1963. /home/travis/R/Library/future/help/future.rdb
  1964. /home/travis/R/Library/future/help/future.rdx
  1965. /home/travis/R/Library/future/help/paths.rds
  1966. /home/travis/R/Library/future/Meta/package.rds
  1967. /home/travis/R/Library/ggplot2/DESCRIPTION
  1968. /home/travis/R/Library/ggplot2/help/ggplot2.rdb
  1969. /home/travis/R/Library/ggplot2/help/ggplot2.rdx
  1970. /home/travis/R/Library/ggplot2/help/paths.rds
  1971. /home/travis/R/Library/ggplot2/Meta/package.rds
  1972. /home/travis/R/Library/gridExtra/DESCRIPTION
  1973. /home/travis/R/Library/gridExtra/help/gridExtra.rdb
  1974. /home/travis/R/Library/gridExtra/help/gridExtra.rdx
  1975. /home/travis/R/Library/gridExtra/help/paths.rds
  1976. /home/travis/R/Library/gridExtra/Meta/package.rds
  1977. /home/
  1978. 
  1979. ...
  1980. 
  1981. changes detected, packing new archive
  1982. .
  1983. uploading archive
  1984.  
  1985. travis_time:end:044ada71:start=1492420020195625843,finish=1492420032362546831,duration=12166920988
  1986. travis_fold:end:cache.2
  1987. travis_fold:start:sauce_connect.stop
  1988. Stopping Sauce Connect
  1989. travis_time:start:004f698c
  1990. $ travis_stop_sauce_connect
  1991. Waiting for graceful Sauce Connect shutdown
  1992. 17 Apr 09:07:12 - Got signal terminated
  1993. 17 Apr 09:07:12 - Cleaning up.
  1994. 17 Apr 09:07:12 - Removing tunnel 91ac76acd3dd450b8170a07e50f8db9d.
  1995. 17 Apr 09:07:12 - Waiting for any active jobs using this tunnel to finish.
  1996. 17 Apr 09:07:12 - Press CTRL-C again to shut down immediately.
  1997. 17 Apr 09:07:12 - Note: if you do this, tests that are still running will fail.
  1998. Waiting for graceful Sauce Connect shutdown
  1999. Waiting for graceful Sauce Connect shutdown
  2000. Waiting for graceful Sauce Connect shutdown
  2001. 17 Apr 09:07:16 - All jobs using the tunnel have finished.
  2002. 17 Apr 09:07:16 - Waiting for the connection to terminate...
  2003. Waiting for graceful Sauce Connect shutdown
  2004. 17 Apr 09:07:17 - Connection closed (8).
  2005. 17 Apr 09:07:17 - Goodbye.
  2006. Sauce Connect shutdown complete
  2007.  
  2008. travis_time:end:004f698c:start=1492420032369149590,finish=1492420037382911580,duration=5013761990
  2009. travis_fold:end:sauce_connect.stop
  2010. 
  2011. Done. Your build exited with 1.
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