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- allsnps: YES
- ## qpAdm version: 810
- seed: 1919201983
- left pops:
- SPGT
- InPe
- Armenia_MBA.SG
- Molaly_LBA
- right pops:
- Kazakhstan_Botai.SG
- Ganj_Dareh_N
- PPN
- Anatolia_N
- Iberia_MN
- Russia_MA1.SG
- Georgia_Satsurblia.SG
- Kostenki14.SG
- Russia_Karelia_HG
- Serbia_Iron_Gates_HG
- Tyumen_HG
- Onge.DG
- Russia_Shamanka_EN.SG
- 0 SPGT 85
- 1 InPe 10
- 2 Armenia_MBA.SG 4
- 3 Molaly_LBA 1
- 4 Kazakhstan_Botai.SG 3
- 5 Ganj_Dareh_N 7
- 6 PPN 8
- 7 Anatolia_N 22
- 8 Iberia_MN 4
- 9 Russia_MA1.SG 1
- 10 Georgia_Satsurblia.SG 1
- 11 Kostenki14.SG 1
- 12 Russia_Karelia_HG 2
- 13 Serbia_Iron_Gates_HG 32
- 14 Tyumen_HG 2
- 15 Onge.DG 2
- 16 Russia_Shamanka_EN.SG 10
- jackknife block size: 0.050
- snps: 1150476 indivs: 195
- number of blocks for block jackknife: 552
- ## ncols: 1150476
- coverage: SPGT 1134632
- coverage: InPe 878190
- coverage: Armenia_MBA.SG 919421
- coverage: Molaly_LBA 732706
- coverage: Kazakhstan_Botai.SG 1149870
- coverage: Ganj_Dareh_N 1029695
- coverage: PPN 835499
- coverage: Anatolia_N 1134099
- coverage: Iberia_MN 967760
- coverage: Russia_MA1.SG 805960
- coverage: Georgia_Satsurblia.SG 801311
- coverage: Kostenki14.SG 1048972
- coverage: Russia_Karelia_HG 1010733
- coverage: Serbia_Iron_Gates_HG 1139259
- coverage: Tyumen_HG 807474
- coverage: Onge.DG 1120748
- coverage: Russia_Shamanka_EN.SG 1149998
- dof (jackknife): 466.936
- numsnps used: 1150476
- codimension 1
- f4info:
- f4rank: 2 dof: 10 chisq: 12.644 tail: 0.244288311 dofdiff: 12 chisqdiff: -12.644 taildiff: 1
- B:
- scale 1.000 1.000
- Ganj_Dareh_N 0.338 2.102
- PPN 1.709 0.041
- Anatolia_N 1.755 -0.237
- Iberia_MN 1.556 -0.322
- Russia_MA1.SG 0.089 0.770
- Georgia_Satsurblia.SG 0.987 0.553
- Kostenki14.SG 0.362 0.694
- Russia_Karelia_HG 0.680 -0.162
- Serbia_Iron_Gates_HG 1.069 -0.833
- Tyumen_HG -0.094 0.471
- Onge.DG -0.518 2.072
- Russia_Shamanka_EN.SG -0.686 0.896
- A:
- scale 744.124 1105.649
- InPe 0.007 0.776
- Armenia_MBA.SG 1.577 -0.339
- Molaly_LBA -0.717 -1.511
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 12.644 taildiff: 0.244288311
- B:
- scale 1.000 1.000 1.000
- Ganj_Dareh_N 0.411 2.060 -1.763
- PPN 1.722 -0.033 -0.165
- Anatolia_N 1.750 -0.350 -0.468
- Iberia_MN 1.567 -0.441 0.388
- Russia_MA1.SG 0.111 0.773 -0.363
- Georgia_Satsurblia.SG 1.008 0.507 -0.215
- Kostenki14.SG 0.417 0.648 0.012
- Russia_Karelia_HG 0.687 -0.247 -0.249
- Serbia_Iron_Gates_HG 1.064 -0.879 1.294
- Tyumen_HG -0.075 0.430 -0.576
- Onge.DG -0.410 2.076 -0.336
- Russia_Shamanka_EN.SG -0.609 0.915 2.477
- A:
- scale 756.845 1231.609 6660.103
- InPe 0.163 1.030 0.770
- Armenia_MBA.SG 1.628 -0.434 0.189
- Molaly_LBA -0.568 -1.323 1.540
- best coefficients: 0.597 0.124 0.279
- Jackknife mean: 0.596943783 0.124427839 0.278628377
- std. errors: 0.022 0.020 0.028
- error covariance (* 1000000)
- 501 -51 -450
- -51 395 -344
- -450 -344 795
- summ: SPGT 3 0.244288 0.597 0.124 0.279 501 -51 -450 395 -344 795
- fixed pat wt dof chisq tail prob
- 000 0 10 12.644 0.244288 0.597 0.124 0.279
- 001 1 11 103.708 3.28434e-17 0.776 0.224 -0.000
- 010 1 11 41.565 1.92571e-05 0.601 0.000 0.399
- 100 1 11 166.320 6.73966e-30 0.000 -0.319 1.319 infeasible
- 011 2 12 235.235 0 1.000 0.000 -0.000
- 101 2 12 684.626 0 0.000 1.000 -0.000
- 110 2 12 186.250 0 0.000 0.000 1.000
- best pat: 000 0.244288 - -
- best pat: 010 1.92571e-05 chi(nested): 28.922 p-value for nested model: 7.53643e-08
- best pat: 110 2.21936e-33 chi(nested): 144.684 p-value for nested model: 2.51737e-33
- coeffs: 0.597 0.124 0.279
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: InPe Ganj_Dareh_N 0.001603 8.929601
- details: Armenia_MBA.SG Ganj_Dareh_N 0.000127 0.456095
- details: Molaly_LBA Ganj_Dareh_N -0.002977 -9.436498
- dscore: Ganj_Dareh_N f4: 0.000142 Z: 1.019026
- details: InPe PPN 0.000330 1.675276
- details: Armenia_MBA.SG PPN 0.003751 12.169763
- details: Molaly_LBA PPN -0.001321 -3.849371
- dscore: PPN f4: 0.000294 Z: 1.939490
- details: InPe Anatolia_N 0.000043 0.283606
- details: Armenia_MBA.SG Anatolia_N 0.003907 15.158860
- details: Molaly_LBA Anatolia_N -0.001068 -3.498937
- dscore: Anatolia_N f4: 0.000214 Z: 1.710087
- details: InPe Iberia_MN 0.000013 0.081125
- details: Armenia_MBA.SG Iberia_MN 0.003576 12.637624
- details: Molaly_LBA Iberia_MN -0.000631 -1.924074
- dscore: Iberia_MN f4: 0.000276 Z: 2.017688
- details: InPe Russia_MA1.SG 0.000629 3.188670
- details: Armenia_MBA.SG Russia_MA1.SG -0.000030 -0.105129
- details: Molaly_LBA Russia_MA1.SG -0.001025 -3.256534
- dscore: Russia_MA1.SG f4: 0.000086 Z: 0.548256
- details: InPe Georgia_Satsurblia.SG 0.000622 2.801914
- details: Armenia_MBA.SG Georgia_Satsurblia.SG 0.001997 6.130598
- details: Molaly_LBA Georgia_Satsurblia.SG -0.001401 -4.027519
- dscore: Georgia_Satsurblia.SG f4: 0.000229 Z: 1.331812
- details: InPe Kostenki14.SG 0.000649 3.102896
- details: Armenia_MBA.SG Kostenki14.SG 0.000702 2.288000
- details: Molaly_LBA Kostenki14.SG -0.001017 -2.872073
- dscore: Kostenki14.SG f4: 0.000191 Z: 1.156125
- details: InPe Russia_Karelia_HG -0.000076 -0.423295
- details: Armenia_MBA.SG Russia_Karelia_HG 0.001590 5.881447
- details: Molaly_LBA Russia_Karelia_HG -0.000316 -1.033789
- dscore: Russia_Karelia_HG f4: 0.000064 Z: 0.445621
- details: InPe Serbia_Iron_Gates_HG -0.000351 -2.436458
- details: Armenia_MBA.SG Serbia_Iron_Gates_HG 0.002657 11.421091
- details: Molaly_LBA Serbia_Iron_Gates_HG 0.000408 1.462518
- dscore: Serbia_Iron_Gates_HG f4: 0.000234 Z: 1.954829
- details: InPe Tyumen_HG 0.000271 1.465266
- details: Armenia_MBA.SG Tyumen_HG -0.000309 -1.200609
- details: Molaly_LBA Tyumen_HG -0.000586 -1.761741
- dscore: Tyumen_HG f4: -0.000040 Z: -0.275017
- details: InPe Onge.DG 0.001632 9.074287
- details: Armenia_MBA.SG Onge.DG -0.001606 -5.686297
- details: Molaly_LBA Onge.DG -0.002012 -6.036164
- dscore: Onge.DG f4: 0.000214 Z: 1.471934
- details: InPe Russia_Shamanka_EN.SG 0.000932 6.153595
- details: Armenia_MBA.SG Russia_Shamanka_EN.SG -0.001541 -6.730942
- details: Molaly_LBA Russia_Shamanka_EN.SG 0.000046 0.144597
- dscore: Russia_Shamanka_EN.SG f4: 0.000378 Z: 2.965879
- gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 1.019
- gendstat: Kazakhstan_Botai.SG PPN 1.939
- gendstat: Kazakhstan_Botai.SG Anatolia_N 1.710
- gendstat: Kazakhstan_Botai.SG Iberia_MN 2.018
- gendstat: Kazakhstan_Botai.SG Russia_MA1.SG 0.548
- gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 1.332
- gendstat: Kazakhstan_Botai.SG Kostenki14.SG 1.156
- gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG 0.446
- gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG 1.955
- gendstat: Kazakhstan_Botai.SG Tyumen_HG -0.275
- gendstat: Kazakhstan_Botai.SG Onge.DG 1.472
- gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 2.966
- gendstat: Ganj_Dareh_N PPN 1.002
- gendstat: Ganj_Dareh_N Anatolia_N 0.582
- gendstat: Ganj_Dareh_N Iberia_MN 0.960
- gendstat: Ganj_Dareh_N Russia_MA1.SG -0.299
- gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG 0.508
- gendstat: Ganj_Dareh_N Kostenki14.SG 0.268
- gendstat: Ganj_Dareh_N Russia_Karelia_HG -0.454
- gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG 0.662
- gendstat: Ganj_Dareh_N Tyumen_HG -1.005
- gendstat: Ganj_Dareh_N Onge.DG 0.446
- gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 1.526
- gendstat: PPN Anatolia_N -0.734
- gendstat: PPN Iberia_MN -0.143
- gendstat: PPN Russia_MA1.SG -1.057
- gendstat: PPN Georgia_Satsurblia.SG -0.347
- gendstat: PPN Kostenki14.SG -0.581
- gendstat: PPN Russia_Karelia_HG -1.325
- gendstat: PPN Serbia_Iron_Gates_HG -0.457
- gendstat: PPN Tyumen_HG -1.722
- gendstat: PPN Onge.DG -0.475
- gendstat: PPN Russia_Shamanka_EN.SG 0.527
- gendstat: Anatolia_N Iberia_MN 0.690
- gendstat: Anatolia_N Russia_MA1.SG -0.736
- gendstat: Anatolia_N Georgia_Satsurblia.SG 0.097
- gendstat: Anatolia_N Kostenki14.SG -0.150
- gendstat: Anatolia_N Russia_Karelia_HG -0.984
- gendstat: Anatolia_N Serbia_Iron_Gates_HG 0.213
- gendstat: Anatolia_N Tyumen_HG -1.439
- gendstat: Anatolia_N Onge.DG -0.002
- gendstat: Anatolia_N Russia_Shamanka_EN.SG 1.231
- gendstat: Iberia_MN Russia_MA1.SG -1.043
- gendstat: Iberia_MN Georgia_Satsurblia.SG -0.261
- gendstat: Iberia_MN Kostenki14.SG -0.495
- gendstat: Iberia_MN Russia_Karelia_HG -1.312
- gendstat: Iberia_MN Serbia_Iron_Gates_HG -0.371
- gendstat: Iberia_MN Tyumen_HG -1.706
- gendstat: Iberia_MN Onge.DG -0.394
- gendstat: Iberia_MN Russia_Shamanka_EN.SG 0.686
- gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.660
- gendstat: Russia_MA1.SG Kostenki14.SG 0.533
- gendstat: Russia_MA1.SG Russia_Karelia_HG -0.113
- gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 0.887
- gendstat: Russia_MA1.SG Tyumen_HG -0.637
- gendstat: Russia_MA1.SG Onge.DG 0.659
- gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 1.577
- gendstat: Georgia_Satsurblia.SG Kostenki14.SG -0.191
- gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG -0.824
- gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG 0.030
- gendstat: Georgia_Satsurblia.SG Tyumen_HG -1.318
- gendstat: Georgia_Satsurblia.SG Onge.DG -0.081
- gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 0.822
- gendstat: Kostenki14.SG Russia_Karelia_HG -0.714
- gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 0.292
- gendstat: Kostenki14.SG Tyumen_HG -1.152
- gendstat: Kostenki14.SG Onge.DG 0.124
- gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 1.079
- gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 1.243
- gendstat: Russia_Karelia_HG Tyumen_HG -0.559
- gendstat: Russia_Karelia_HG Onge.DG 0.862
- gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG 1.888
- gendstat: Serbia_Iron_Gates_HG Tyumen_HG -1.644
- gendstat: Serbia_Iron_Gates_HG Onge.DG -0.137
- gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG 1.027
- gendstat: Tyumen_HG Onge.DG 1.364
- gendstat: Tyumen_HG Russia_Shamanka_EN.SG 2.354
- gendstat: Onge.DG Russia_Shamanka_EN.SG 1.272
- ## end of run
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