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bcl2fastq.py_error_Feb18

Feb 18th, 2022
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  1. [2022-02-16 15:08:24 - INFO] Using 210408_VH00511_2_AAAFFWNHV/SampleSheet.csv
  2. [2022-02-16 15:08:24 - INFO] Processing 210408_VH00511_2_AAAFFWNHV/SampleSheet.csv
  3. [2022-02-16 15:08:24 - INFO] Found 384 samples for run 210408_VH00511_2_AAAFFWNHV
  4. [2022-02-16 15:08:24 - INFO] Converting .bcl to .fastq using: $>bcl2fastq --sample-sheet 210408_VH00511_2_AAAFFWNHV/SampleSheet.csv.2022-02-16-1508-24.csv --loading-threads 12 --processing-threads 24 --writing-threads 12 --barcode-mismatches 0 --no-lane-splitting --runfolder-dir 210408_VH00511_2_AAAFFWNHV --tiles 1105 --no-lane-splitting
  5. Traceback (most recent call last):
  6. File "/usr/local/sbin/bcl2fastq.py", line 625, in <module>
  7. bcl2fastq()
  8. File "/opt/conda/envs/main/lib/python3.10/site-packages/click/core.py", line 1128, in __call__
  9. return self.main(*args, **kwargs)
  10. File "/opt/conda/envs/main/lib/python3.10/site-packages/click/core.py", line 1053, in main
  11. rv = self.invoke(ctx)
  12. File "/opt/conda/envs/main/lib/python3.10/site-packages/click/core.py", line 1395, in invoke
  13. return ctx.invoke(self.callback, **ctx.params)
  14. File "/opt/conda/envs/main/lib/python3.10/site-packages/click/core.py", line 754, in invoke
  15. return __callback(*args, **kwargs)
  16. File "/usr/local/sbin/bcl2fastq.py", line 582, in bcl2fastq
  17. run_bcl2fastq(runfolder_dir, cmd_args)
  18. File "/usr/local/sbin/bcl2fastq.py", line 162, in run_bcl2fastq
  19. sp.check_call(cmd, stdout=fh, stderr=fh, shell=True)
  20. File "/opt/conda/envs/main/lib/python3.10/subprocess.py", line 369, in check_call
  21. raise CalledProcessError(retcode, cmd)
  22. subprocess.CalledProcessError: Command 'bcl2fastq --sample-sheet
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