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  1. (IQS) ubuntu@ip-172-31-26-116:~/mpi4py-3.0.3$ pip install mpi mpi4py --no-cache-dir
  2. Requirement already satisfied: mpi in /home/ubuntu/miniconda3/envs/IQS/lib/python3.8/site-packages (0.0.2)
  3. Collecting mpi4py
  4. Downloading mpi4py-3.0.3.tar.gz (1.4 MB)
  5. |████████████████████████████████| 1.4 MB 15.6 MB/s
  6. Building wheels for collected packages: mpi4py
  7. Building wheel for mpi4py (setup.py) ... error
  8. ERROR: Command errored out with exit status 1:
  9. command: /home/ubuntu/miniconda3/envs/IQS/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-s8aso6k1/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-s8aso6k1/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2whyis12
  10. cwd: /tmp/pip-install-s8aso6k1/mpi4py/
  11. Complete output (138 lines):
  12. running bdist_wheel
  13. running build
  14. running build_src
  15. running build_py
  16. creating build
  17. creating build/lib.linux-x86_64-3.8
  18. creating build/lib.linux-x86_64-3.8/mpi4py
  19. copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py
  20. copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.8/mpi4py
  21. copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py
  22. copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.8/mpi4py
  23. creating build/lib.linux-x86_64-3.8/mpi4py/futures
  24. copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  25. copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  26. copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  27. copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  28. copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  29. copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  30. copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  31. copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.8/mpi4py
  32. copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.8/mpi4py
  33. copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.8/mpi4py
  34. creating build/lib.linux-x86_64-3.8/mpi4py/include
  35. creating build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  36. copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  37. copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  38. copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  39. copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  40. copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  41. running build_clib
  42. MPI configuration: [mpi] from 'mpi.cfg'
  43. MPI C compiler: /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc
  44. MPI C++ compiler: /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicxx
  45. checking for library 'lmpe' ...
  46. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  47. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -llmpe -o _configtest
  48. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -llmpe
  49. collect2: error: ld returned 1 exit status
  50. failure.
  51. removing: _configtest.c _configtest.o
  52. building 'mpe' dylib library
  53. creating build/temp.linux-x86_64-3.8
  54. creating build/temp.linux-x86_64-3.8/src
  55. creating build/temp.linux-x86_64-3.8/src/lib-pmpi
  56. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o
  57. creating build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi
  58. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libmpe.so
  59. checking for library 'vt-mpi' ...
  60. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  61. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
  62. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt-mpi
  63. collect2: error: ld returned 1 exit status
  64. failure.
  65. removing: _configtest.c _configtest.o
  66. checking for library 'vt.mpi' ...
  67. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  68. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
  69. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt.mpi
  70. collect2: error: ld returned 1 exit status
  71. failure.
  72. removing: _configtest.c _configtest.o
  73. building 'vt' dylib library
  74. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o
  75. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt.so
  76. checking for library 'vt-mpi' ...
  77. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  78. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
  79. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt-mpi
  80. collect2: error: ld returned 1 exit status
  81. failure.
  82. removing: _configtest.c _configtest.o
  83. checking for library 'vt.mpi' ...
  84. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  85. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
  86. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt.mpi
  87. collect2: error: ld returned 1 exit status
  88. failure.
  89. removing: _configtest.c _configtest.o
  90. building 'vt-mpi' dylib library
  91. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o
  92. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-mpi.so
  93. checking for library 'vt-hyb' ...
  94. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  95. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-hyb -o _configtest
  96. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt-hyb
  97. collect2: error: ld returned 1 exit status
  98. failure.
  99. removing: _configtest.c _configtest.o
  100. checking for library 'vt.ompi' ...
  101. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  102. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.ompi -o _configtest
  103. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt.ompi
  104. collect2: error: ld returned 1 exit status
  105. failure.
  106. removing: _configtest.c _configtest.o
  107. building 'vt-hyb' dylib library
  108. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o
  109. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-hyb.so
  110. running build_ext
  111. MPI configuration: [mpi] from 'mpi.cfg'
  112. MPI C compiler: /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc
  113. MPI C++ compiler: /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicxx
  114. checking for dlopen() availability ...
  115. checking for header 'dlfcn.h' ...
  116. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  117. success!
  118. removing: _configtest.c _configtest.o
  119. success!
  120. checking for library 'dl' ...
  121. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  122. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
  123. success!
  124. removing: _configtest.c _configtest.o _configtest
  125. checking for function 'dlopen' ...
  126. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  127. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
  128. success!
  129. removing: _configtest.c _configtest.o _configtest
  130. building 'mpi4py.dl' extension
  131. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c src/dynload.c -o build/temp.linux-x86_64-3.8/src/dynload.o
  132. gcc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.8/src/dynload.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o build/lib.linux-x86_64-3.8/mpi4py/dl.cpython-38-x86_64-linux-gnu.so
  133. checking for MPI compile and link ...
  134. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  135. success!
  136. removing: _configtest.c _configtest.o
  137. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  138. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -o _configtest
  139. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: warning: libfabric.so.1, needed by /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so, not found (try using -rpath or -rpath-link)
  140. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_fabric@FABRIC_1.1'
  141. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_getinfo@FABRIC_1.1'
  142. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_tostr@FABRIC_1.0'
  143. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_freeinfo@FABRIC_1.1'
  144. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_strerror@FABRIC_1.0'
  145. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_dupinfo@FABRIC_1.1'
  146. collect2: error: ld returned 1 exit status
  147. failure.
  148. removing: _configtest.c _configtest.o
  149. error: Cannot link MPI programs. Check your configuration!!!
  150. ----------------------------------------
  151. ERROR: Failed building wheel for mpi4py
  152. Running setup.py clean for mpi4py
  153. Failed to build mpi4py
  154. Installing collected packages: mpi4py
  155. Running setup.py install for mpi4py ... error
  156. ERROR: Command errored out with exit status 1:
  157. command: /home/ubuntu/miniconda3/envs/IQS/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-s8aso6k1/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-s8aso6k1/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-i_igrkh7/install-record.txt --single-version-externally-managed --compile --install-headers /home/ubuntu/miniconda3/envs/IQS/include/python3.8/mpi4py
  158. cwd: /tmp/pip-install-s8aso6k1/mpi4py/
  159. Complete output (138 lines):
  160. running install
  161. running build
  162. running build_src
  163. running build_py
  164. creating build
  165. creating build/lib.linux-x86_64-3.8
  166. creating build/lib.linux-x86_64-3.8/mpi4py
  167. copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py
  168. copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.8/mpi4py
  169. copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py
  170. copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.8/mpi4py
  171. creating build/lib.linux-x86_64-3.8/mpi4py/futures
  172. copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  173. copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  174. copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  175. copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  176. copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  177. copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  178. copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
  179. copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.8/mpi4py
  180. copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.8/mpi4py
  181. copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.8/mpi4py
  182. creating build/lib.linux-x86_64-3.8/mpi4py/include
  183. creating build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  184. copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  185. copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  186. copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  187. copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  188. copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
  189. running build_clib
  190. MPI configuration: [mpi] from 'mpi.cfg'
  191. MPI C compiler: /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc
  192. MPI C++ compiler: /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicxx
  193. checking for library 'lmpe' ...
  194. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  195. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -llmpe -o _configtest
  196. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -llmpe
  197. collect2: error: ld returned 1 exit status
  198. failure.
  199. removing: _configtest.c _configtest.o
  200. building 'mpe' dylib library
  201. creating build/temp.linux-x86_64-3.8
  202. creating build/temp.linux-x86_64-3.8/src
  203. creating build/temp.linux-x86_64-3.8/src/lib-pmpi
  204. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o
  205. creating build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi
  206. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libmpe.so
  207. checking for library 'vt-mpi' ...
  208. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  209. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
  210. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt-mpi
  211. collect2: error: ld returned 1 exit status
  212. failure.
  213. removing: _configtest.c _configtest.o
  214. checking for library 'vt.mpi' ...
  215. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  216. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
  217. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt.mpi
  218. collect2: error: ld returned 1 exit status
  219. failure.
  220. removing: _configtest.c _configtest.o
  221. building 'vt' dylib library
  222. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o
  223. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt.so
  224. checking for library 'vt-mpi' ...
  225. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  226. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
  227. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt-mpi
  228. collect2: error: ld returned 1 exit status
  229. failure.
  230. removing: _configtest.c _configtest.o
  231. checking for library 'vt.mpi' ...
  232. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  233. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
  234. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt.mpi
  235. collect2: error: ld returned 1 exit status
  236. failure.
  237. removing: _configtest.c _configtest.o
  238. building 'vt-mpi' dylib library
  239. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o
  240. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-mpi.so
  241. checking for library 'vt-hyb' ...
  242. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  243. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-hyb -o _configtest
  244. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt-hyb
  245. collect2: error: ld returned 1 exit status
  246. failure.
  247. removing: _configtest.c _configtest.o
  248. checking for library 'vt.ompi' ...
  249. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  250. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.ompi -o _configtest
  251. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: cannot find -lvt.ompi
  252. collect2: error: ld returned 1 exit status
  253. failure.
  254. removing: _configtest.c _configtest.o
  255. building 'vt-hyb' dylib library
  256. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o
  257. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-hyb.so
  258. running build_ext
  259. MPI configuration: [mpi] from 'mpi.cfg'
  260. MPI C compiler: /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc
  261. MPI C++ compiler: /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicxx
  262. checking for dlopen() availability ...
  263. checking for header 'dlfcn.h' ...
  264. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  265. success!
  266. removing: _configtest.c _configtest.o
  267. success!
  268. checking for library 'dl' ...
  269. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  270. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
  271. success!
  272. removing: _configtest.c _configtest.o _configtest
  273. checking for function 'dlopen' ...
  274. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  275. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
  276. success!
  277. removing: _configtest.c _configtest.o _configtest
  278. building 'mpi4py.dl' extension
  279. gcc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c src/dynload.c -o build/temp.linux-x86_64-3.8/src/dynload.o
  280. gcc -pthread -shared -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -L/home/ubuntu/miniconda3/envs/IQS/lib -Wl,-rpath=/home/ubuntu/miniconda3/envs/IQS/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.8/src/dynload.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o build/lib.linux-x86_64-3.8/mpi4py/dl.cpython-38-x86_64-linux-gnu.so
  281. checking for MPI compile and link ...
  282. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  283. success!
  284. removing: _configtest.c _configtest.o
  285. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/ubuntu/miniconda3/envs/IQS/include/python3.8 -c _configtest.c -o _configtest.o
  286. /home/ubuntu/intel/impi/2019.7.217/intel64/bin/mpicc -pthread -B /home/ubuntu/miniconda3/envs/IQS/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -o _configtest
  287. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: warning: libfabric.so.1, needed by /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so, not found (try using -rpath or -rpath-link)
  288. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_fabric@FABRIC_1.1'
  289. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_getinfo@FABRIC_1.1'
  290. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_tostr@FABRIC_1.0'
  291. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_freeinfo@FABRIC_1.1'
  292. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_strerror@FABRIC_1.0'
  293. /home/ubuntu/miniconda3/envs/IQS/compiler_compat/ld: /home/ubuntu/intel/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release/libmpi.so: undefined reference to `fi_dupinfo@FABRIC_1.1'
  294. collect2: error: ld returned 1 exit status
  295. failure.
  296. removing: _configtest.c _configtest.o
  297. error: Cannot link MPI programs. Check your configuration!!!
  298. ----------------------------------------
  299. ERROR: Command errored out with exit status 1: /home/ubuntu/miniconda3/envs/IQS/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-s8aso6k1/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-s8aso6k1/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-i_igrkh7/install-record.txt --single-version-externally-managed --compile --install-headers /home/ubuntu/miniconda3/envs/IQS/include/python3.8/mpi4py Check the logs for full command output.
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