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misnomer001

megiddo outlier catacomb

misnomer001
May 31st, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1854654858
  4. read 1073741824 bytes
  5. read 2147483648 bytes
  6. read 2202161218 bytes
  7. packed geno read OK
  8. end of inpack
  9.  
  10. left pops:
  11. Megiddo_MLBA_outlierfamily
  12. Megiddo_MLBA
  13. Russia_Steppe_Catacomb
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Botai
  26. Russia_MLBA_Sintashta
  27. Uzbekistan_BA_Dzharkutan1
  28.  
  29. 0 Megiddo_MLBA_outlierfamily 2
  30. 1 Megiddo_MLBA 22
  31. 2 Russia_Steppe_Catacomb 4
  32. 3 Cameroon_SMA.DG 1
  33. 4 EEHG 5
  34. 5 WSHG 3
  35. 6 PPN 11
  36. 7 WEHG 33
  37. 8 Anatolia_N 22
  38. 9 Iran_GanjDareh_N 8
  39. 10 Russia_UstBelaya_Angara 8
  40. 11 ONG.SG 6
  41. 12 Botai 2
  42. 13 Russia_MLBA_Sintashta 36
  43. 14 Uzbekistan_BA_Dzharkutan1 7
  44. jackknife block size: 0.050
  45. snps: 1150506 indivs: 170
  46. number of blocks for block jackknife: 713
  47. ## ncols: 1150506
  48. coverage: Megiddo_MLBA_outlierfamily 625041
  49. coverage: Megiddo_MLBA 989505
  50. coverage: Russia_Steppe_Catacomb 863785
  51. coverage: Cameroon_SMA.DG 1140138
  52. coverage: EEHG 1052093
  53. coverage: WSHG 858019
  54. coverage: PPN 847771
  55. coverage: WEHG 1140599
  56. coverage: Anatolia_N 1139031
  57. coverage: Iran_GanjDareh_N 1057358
  58. coverage: Russia_UstBelaya_Angara 1072574
  59. coverage: ONG.SG 1143397
  60. coverage: Botai 926654
  61. coverage: Russia_MLBA_Sintashta 1128449
  62. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  63. dof (jackknife): 622.825
  64. numsnps used: 1150506
  65. codimension 1
  66. f4info:
  67. f4rank: 1 dof: 10 chisq: 5.423 tail: 0.861169218 dofdiff: 12 chisqdiff: -5.423 taildiff: 1
  68. B:
  69. scale 1.000
  70. EEHG 1.551
  71. WSHG 1.662
  72. PPN -0.867
  73. WEHG 1.029
  74. Anatolia_N -0.530
  75. Iran_GanjDareh_N 0.137
  76. Russia_UstBelaya_Angara 0.771
  77. ONG.SG 0.288
  78. Botai 1.529
  79. Russia_MLBA_Sintashta 0.824
  80. Uzbekistan_BA_Dzharkutan1 0.168
  81. A:
  82. scale 467.697
  83. Megiddo_MLBA -0.476
  84. Russia_Steppe_Catacomb 1.332
  85.  
  86.  
  87. full rank
  88. f4info:
  89. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 5.423 taildiff: 0.861169218
  90. B:
  91. scale 1024.812 343.770
  92. EEHG -1.340 1.617
  93. WSHG -1.647 1.664
  94. PPN 1.047 -0.785
  95. WEHG -1.142 0.997
  96. Anatolia_N 0.593 -0.485
  97. Iran_GanjDareh_N -0.276 0.105
  98. Russia_UstBelaya_Angara -0.842 0.754
  99. ONG.SG -0.310 0.286
  100. Botai -1.416 1.558
  101. Russia_MLBA_Sintashta -0.905 0.806
  102. Uzbekistan_BA_Dzharkutan1 -0.188 0.177
  103. A:
  104. scale 1.414 1.414
  105. Megiddo_MLBA 1.414 0.000
  106. Russia_Steppe_Catacomb 0.000 1.414
  107.  
  108.  
  109. best coefficients: 0.737 0.263
  110. Jackknife mean: 0.736568384 0.263431616
  111. std. errors: 0.021 0.021
  112.  
  113. error covariance (* 1,000,000)
  114. 456 -456
  115. -456 456
  116.  
  117.  
  118. summ: Megiddo_MLBA_outlierfamily 2 0.861169 0.737 0.263 456 -456 456
  119.  
  120. fixed pat wt dof chisq tail prob
  121. 00 0 10 5.423 0.861169 0.737 0.263
  122. 01 1 11 146.647 7.20827e-26 1.000 0.000
  123. 10 1 11 835.705 0 0.000 1.000
  124. best pat: 00 0.861169 - -
  125. best pat: 01 7.20827e-26 chi(nested): 141.224 p-value for nested model: 1.43749e-32
  126.  
  127. coeffs: 0.737 0.263
  128.  
  129. ## dscore:: f_4(Base, Fit, Rbase, right2)
  130. ## genstat:: f_4(Base, Fit, right1, right2)
  131.  
  132. details: Megiddo_MLBA EEHG -0.001307 -4.473821
  133. details: Russia_Steppe_Catacomb EEHG 0.004704 14.825450
  134. dscore: EEHG f4: 0.000276 Z: 0.985857
  135.  
  136. details: Megiddo_MLBA WSHG -0.001607 -4.817192
  137. details: Russia_Steppe_Catacomb WSHG 0.004841 13.444304
  138. dscore: WSHG f4: 0.000092 Z: 0.284707
  139.  
  140. details: Megiddo_MLBA PPN 0.001022 3.431629
  141. details: Russia_Steppe_Catacomb PPN -0.002284 -6.907843
  142. dscore: PPN f4: 0.000151 Z: 0.519684
  143.  
  144. details: Megiddo_MLBA WEHG -0.001115 -3.920750
  145. details: Russia_Steppe_Catacomb WEHG 0.002900 8.892585
  146. dscore: WEHG f4: -0.000057 Z: -0.205536
  147.  
  148. details: Megiddo_MLBA Anatolia_N 0.000578 2.199389
  149. details: Russia_Steppe_Catacomb Anatolia_N -0.001411 -4.806858
  150. dscore: Anatolia_N f4: 0.000054 Z: 0.210487
  151.  
  152. details: Megiddo_MLBA Iran_GanjDareh_N -0.000269 -1.031422
  153. details: Russia_Steppe_Catacomb Iran_GanjDareh_N 0.000305 1.038393
  154. dscore: Iran_GanjDareh_N f4: -0.000118 Z: -0.464681
  155.  
  156. details: Megiddo_MLBA Russia_UstBelaya_Angara -0.000822 -3.011560
  157. details: Russia_Steppe_Catacomb Russia_UstBelaya_Angara 0.002194 7.116631
  158. dscore: Russia_UstBelaya_Angara f4: -0.000027 Z: -0.102513
  159.  
  160. details: Megiddo_MLBA ONG.SG -0.000302 -1.112605
  161. details: Russia_Steppe_Catacomb ONG.SG 0.000831 2.735534
  162. dscore: ONG.SG f4: -0.000004 Z: -0.013458
  163.  
  164. details: Megiddo_MLBA Botai -0.001381 -4.438500
  165. details: Russia_Steppe_Catacomb Botai 0.004532 13.665827
  166. dscore: Botai f4: 0.000176 Z: 0.595396
  167.  
  168. details: Megiddo_MLBA Russia_MLBA_Sintashta -0.000883 -3.464897
  169. details: Russia_Steppe_Catacomb Russia_MLBA_Sintashta 0.002345 8.348099
  170. dscore: Russia_MLBA_Sintashta f4: -0.000033 Z: -0.133200
  171.  
  172. details: Megiddo_MLBA Uzbekistan_BA_Dzharkutan1 -0.000183 -0.756697
  173. details: Russia_Steppe_Catacomb Uzbekistan_BA_Dzharkutan1 0.000515 1.883541
  174. dscore: Uzbekistan_BA_Dzharkutan1 f4: 0.000001 Z: 0.003672
  175.  
  176. gendstat: Cameroon_SMA.DG EEHG 0.986
  177. gendstat: Cameroon_SMA.DG WSHG 0.285
  178. gendstat: Cameroon_SMA.DG PPN 0.520
  179. gendstat: Cameroon_SMA.DG WEHG -0.206
  180. gendstat: Cameroon_SMA.DG Anatolia_N 0.210
  181. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.465
  182. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara -0.103
  183. gendstat: Cameroon_SMA.DG ONG.SG -0.013
  184. gendstat: Cameroon_SMA.DG Botai 0.595
  185. gendstat: Cameroon_SMA.DG Russia_MLBA_Sintashta -0.133
  186. gendstat: Cameroon_SMA.DG Uzbekistan_BA_Dzharkutan1 0.004
  187. gendstat: EEHG WSHG -0.727
  188. gendstat: EEHG PPN -0.452
  189. gendstat: EEHG WEHG -1.648
  190. gendstat: EEHG Anatolia_N -0.975
  191. gendstat: EEHG Iran_GanjDareh_N -1.530
  192. gendstat: EEHG Russia_UstBelaya_Angara -1.337
  193. gendstat: EEHG ONG.SG -1.060
  194. gendstat: EEHG Botai -0.397
  195. gendstat: EEHG Russia_MLBA_Sintashta -1.601
  196. gendstat: EEHG Uzbekistan_BA_Dzharkutan1 -1.240
  197. gendstat: WSHG PPN 0.181
  198. gendstat: WSHG WEHG -0.578
  199. gendstat: WSHG Anatolia_N -0.129
  200. gendstat: WSHG Iran_GanjDareh_N -0.719
  201. gendstat: WSHG Russia_UstBelaya_Angara -0.467
  202. gendstat: WSHG ONG.SG -0.338
  203. gendstat: WSHG Botai 0.336
  204. gendstat: WSHG Russia_MLBA_Sintashta -0.512
  205. gendstat: WSHG Uzbekistan_BA_Dzharkutan1 -0.341
  206. gendstat: PPN WEHG -0.870
  207. gendstat: PPN Anatolia_N -0.510
  208. gendstat: PPN Iran_GanjDareh_N -1.006
  209. gendstat: PPN Russia_UstBelaya_Angara -0.679
  210. gendstat: PPN ONG.SG -0.565
  211. gendstat: PPN Botai 0.084
  212. gendstat: PPN Russia_MLBA_Sintashta -0.852
  213. gendstat: PPN Uzbekistan_BA_Dzharkutan1 -0.650
  214. gendstat: WEHG Anatolia_N 0.603
  215. gendstat: WEHG Iran_GanjDareh_N -0.253
  216. gendstat: WEHG Russia_UstBelaya_Angara 0.136
  217. gendstat: WEHG ONG.SG 0.222
  218. gendstat: WEHG Botai 0.919
  219. gendstat: WEHG Russia_MLBA_Sintashta 0.160
  220. gendstat: WEHG Uzbekistan_BA_Dzharkutan1 0.286
  221. gendstat: Anatolia_N Iran_GanjDareh_N -0.804
  222. gendstat: Anatolia_N Russia_UstBelaya_Angara -0.372
  223. gendstat: Anatolia_N ONG.SG -0.248
  224. gendstat: Anatolia_N Botai 0.447
  225. gendstat: Anatolia_N Russia_MLBA_Sintashta -0.614
  226. gendstat: Anatolia_N Uzbekistan_BA_Dzharkutan1 -0.308
  227. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.410
  228. gendstat: Iran_GanjDareh_N ONG.SG 0.498
  229. gendstat: Iran_GanjDareh_N Botai 1.071
  230. gendstat: Iran_GanjDareh_N Russia_MLBA_Sintashta 0.425
  231. gendstat: Iran_GanjDareh_N Uzbekistan_BA_Dzharkutan1 0.713
  232. gendstat: Russia_UstBelaya_Angara ONG.SG 0.119
  233. gendstat: Russia_UstBelaya_Angara Botai 0.889
  234. gendstat: Russia_UstBelaya_Angara Russia_MLBA_Sintashta -0.029
  235. gendstat: Russia_UstBelaya_Angara Uzbekistan_BA_Dzharkutan1 0.143
  236. gendstat: ONG.SG Botai 0.667
  237. gendstat: ONG.SG Russia_MLBA_Sintashta -0.140
  238. gendstat: ONG.SG Uzbekistan_BA_Dzharkutan1 0.021
  239. gendstat: Botai Russia_MLBA_Sintashta -0.900
  240. gendstat: Botai Uzbekistan_BA_Dzharkutan1 -0.712
  241. gendstat: Russia_MLBA_Sintashta Uzbekistan_BA_Dzharkutan1 0.217
  242.  
  243. ##end of qpAdm: 379.139 seconds cpu 1294.426 Mbytes in use
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