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Oct 15th, 2017
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  1. -> DBI->connect(dbi:mysql:driver=mysql;host=localhost;dbname=pddb_gene_models_3_26, webuser, ****)
  2. <- connect('driver=mysql;host=localhost;dbname=pddb_gene_models_3_26', 'webuser', ...)= DBI::db=HASH(0x67ddb78) at DBI.pm line 665
  3. <- STORE('PrintError', 1)= 1 at DBI.pm line 717
  4. <- STORE('AutoCommit', 1)= 1 at DBI.pm line 717
  5. <- STORE('Username', 'webuser')= 1 at DBI.pm line 720
  6. <- connected('dbi:mysql:driver=mysql;host=localhost;dbname=pddb_gene_models_3_26', 'webuser', ...)= undef at DBI.pm line 727
  7. <- connect= DBI::db=HASH(0x67ddb78)
  8. <- STORE('dbi_connect_closure', CODE(0x66fac58))= 1 at DBI.pm line 736
  9. <- STORE('PrintError', 0)= 1 at caching_handle.pm line 136
  10. <- STORE('LongReadLen', 6553500)= 1 at caching_handle.pm line 139
  11. <- STORE('LongTruncOk', 0)= 1 at caching_handle.pm line 140
  12. <- STORE('mysql_auto_reconnect', 1)= 1 at caching_handle.pm line 141
  13. $VAR1 = [
  14. 'CDS:Ensembl',
  15. 'UTR:Ensembl'
  16. ];
  17. <- FETCH('ActiveKids')= 0 at caching_handle.pm line 225
  18. <- prepare_cached('SELECT fref,fstart,fstop,fsource,fmethod,fscore,fstrand,fphase,gclass,gname,ftarget_start,ftarget_stop,fdata.fidfdata.gid
  19. FROM fdata,ftype,fgroup,fattribute,fattribute_to_feature
  20. WHERE fgroup.gid = fdata.gid
  21. AND ftype.ftypeid = fdata.ftypeid
  22. AND fattribute.fattribute_id=fattribute_to_feature.fattribute_id
  23. AND fdata.fid=fattribute_to_feature.fid
  24. AND ((fmethod = ? AND fsource = ?) OR (fmethod = ? AND fsource = ?))
  25.  
  26. AND ((fattribute.fattribute_name=? AND fattribute_to_feature.fattribute_value=?))', HASH(0x67e5f50), ...)= DBI::st=HASH(0x66ec67) at caching_handle.pm line 246
  27. <- execute('CDS', 'Ensembl', ...)= 1 at caching_handle.pm line 123
  28. <- fetchrow_array= ( 'chr4' '154622652' '154626851' 'Ensembl' 'CDS' undef '+' undef 'Native_id' 'ENST00000260010' undef undef '280262' '422357' ) [14 items] row1 at dbi.pm line 298
  29. <- fetchrow_array= ( ) [0 items] row1 at dbi.pm line 298
  30. <- finish= 1 at dbi.pm line 302
  31. <- FETCH('ActiveKids')= 0 at caching_handle.pm line 225
  32. <- prepare_cached('SELECT fattribute_value FROM fattribute_to_feature,fattribute WHERE fid=? AND fattribute_name=? AND fattribute.fatribute_id=fattribute_to_feature.fattribute_id', HASH(0x6708060), ...)= DBI::st=HASH(0x66ecbf8) at caching_handle.pm line 246
  33. <- execute('2802692', 'Build')= 1 at caching_handle.pm line 123
  34. <- fetchrow_array= ( 'GRCh37' ) [1 items] row1 at dbi.pm line 1548
  35. <- fetchrow_array= ( ) [0 items] row1 at dbi.pm line 1548
  36. <- finish= 1 at dbi.pm line 1551
  37. <- disconnect= 1 at caching_handle.pm line 246
  38. <- DESTROY(DBI::st=HASH(0x67081b0))= undef at GFF.t line 53
  39. <- DESTROY(DBI::st=HASH(0x67e6010))= undef at GFF.t line 53
  40. <- DESTROY(DBI::db=HASH(0x67ddb18))= undef at GFF.t line 53
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