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misnomer001

Brahmin.dg loebanr + irula fail kangju in right

misnomer001
Sep 11th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. popleft: left
  5. popright: right
  6. details: YES
  7. allsnps: YES
  8. inbreed: NO
  9. oldallsnps: NO
  10. fstatsname: fstatsa8.txt
  11. ## qpAdm version: 1520
  12. seed: 1896499515
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Brahmin.DG
  18. Pakistan_Loebanr_IA
  19. Irula.DG
  20.  
  21. right pops:
  22. Mbuti.DG
  23. EHG
  24. CHG
  25. Russia_Shamanka_Eneolithic.SG
  26. WSHG
  27. PPN
  28. Serbia_IronGates_Mesolithic
  29. Iran_GanjDareh_N
  30. Turkey_N
  31. Tarim_EMBA1
  32. ONG.SG
  33. Kazakhstan_Kangju
  34.  
  35. codimension 1
  36. f4info:
  37. f4rank: 1 dof: 10 chisq: 21.343 tail: 0.0188256685 dofdiff: 12 chisqdiff: -21.343 taildiff: 1
  38. B:
  39. scale 1.000
  40. EHG 1.102
  41. CHG 1.145
  42. Russia_Shamanka_Eneolithic.SG -0.370
  43. WSHG 1.038
  44. PPN 1.129
  45. Serbia_IronGates_Mesolithic 1.008
  46. Iran_GanjDareh_N 1.253
  47. Turkey_N 1.149
  48. Tarim_EMBA1 0.903
  49. ONG.SG -0.768
  50. Kazakhstan_Kangju 0.821
  51. A:
  52. scale 466.636
  53. Pakistan_Loebanr_IA 0.949
  54. Irula.DG -1.049
  55.  
  56.  
  57. full rank
  58. f4info:
  59. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 21.343 taildiff: 0.0188256685
  60. B:
  61. scale 500.753 442.909
  62. EHG 1.100 -1.116
  63. CHG 1.064 -1.206
  64. Russia_Shamanka_Eneolithic.SG -0.245 0.523
  65. WSHG 1.053 -0.993
  66. PPN 1.223 -1.014
  67. Serbia_IronGates_Mesolithic 1.017 -0.996
  68. Iran_GanjDareh_N 1.387 -1.091
  69. Turkey_N 1.147 -1.146
  70. Tarim_EMBA1 0.909 -0.883
  71. ONG.SG -0.722 0.793
  72. Kazakhstan_Kangju 0.609 -1.053
  73. A:
  74. scale 1.414 1.414
  75. Pakistan_Loebanr_IA 1.414 0.000
  76. Irula.DG 0.000 1.414
  77.  
  78.  
  79. best coefficients: 0.525 0.475
  80. totmean: 0.525 0.475
  81. boot mean: 0.525 0.475
  82. std. errors: 0.026 0.026
  83.  
  84. error covariance (* 1,000,000)
  85. 651 -651
  86. -651 651
  87.  
  88.  
  89. summ: Brahmin.DG 2 0.018826 0.525 0.475 651 -651 651
  90.  
  91. fixed pat wt dof chisq tail prob
  92. 00 0 10 21.343 0.0188257 0.525 0.475
  93. 01 1 11 368.307 0 1.000 0.000
  94. 10 1 11 284.680 0 0.000 1.000
  95. best pat: 00 0.0188257 - -
  96. best pat: 10 1.47085e-54 chi(nested): 263.337 p-value for nested model: 3.21514e-59
  97.  
  98. coeffs: 0.525 0.475
  99.  
  100. ## dscore:: f_4(Base, Fit, Rbase, right2)
  101. ## genstat:: f_4(Base, Fit, right1, right2)
  102.  
  103. details: Pakistan_Loebanr_IA EHG 0.002196 7.602534
  104. details: Irula.DG EHG -0.002521 -7.188478
  105. dscore: EHG f4: -0.000045 Z: -0.156584
  106.  
  107. details: Pakistan_Loebanr_IA CHG 0.002125 7.368111
  108. details: Irula.DG CHG -0.002722 -7.351505
  109. dscore: CHG f4: -0.000178 Z: -0.608277
  110.  
  111. details: Pakistan_Loebanr_IA Russia_Shamanka_Eneolithic.SG -0.000490 -2.089738
  112. details: Irula.DG Russia_Shamanka_Eneolithic.SG 0.001180 3.725751
  113. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000304 Z: 1.239796
  114.  
  115. details: Pakistan_Loebanr_IA WSHG 0.002102 7.171909
  116. details: Irula.DG WSHG -0.002242 -6.170346
  117. dscore: WSHG f4: 0.000038 Z: 0.131833
  118.  
  119. details: Pakistan_Loebanr_IA PPN 0.002443 9.315577
  120. details: Irula.DG PPN -0.002290 -6.619172
  121. dscore: PPN f4: 0.000195 Z: 0.715335
  122.  
  123. details: Pakistan_Loebanr_IA Serbia_IronGates_Mesolithic 0.002031 8.022112
  124. details: Irula.DG Serbia_IronGates_Mesolithic -0.002248 -6.941402
  125. dscore: Serbia_IronGates_Mesolithic f4: -0.000002 Z: -0.007021
  126.  
  127. details: Pakistan_Loebanr_IA Iran_GanjDareh_N 0.002769 11.178855
  128. details: Irula.DG Iran_GanjDareh_N -0.002462 -8.037192
  129. dscore: Iran_GanjDareh_N f4: 0.000284 Z: 1.156763
  130.  
  131. details: Pakistan_Loebanr_IA Turkey_N 0.002292 9.861906
  132. details: Irula.DG Turkey_N -0.002588 -8.820052
  133. dscore: Turkey_N f4: -0.000027 Z: -0.114657
  134.  
  135. details: Pakistan_Loebanr_IA Tarim_EMBA1 0.001816 6.343880
  136. details: Irula.DG Tarim_EMBA1 -0.001993 -5.517277
  137. dscore: Tarim_EMBA1 f4: 0.000006 Z: 0.021170
  138.  
  139. details: Pakistan_Loebanr_IA ONG.SG -0.001441 -5.518368
  140. details: Irula.DG ONG.SG 0.001790 5.274368
  141. dscore: ONG.SG f4: 0.000094 Z: 0.350439
  142.  
  143. details: Pakistan_Loebanr_IA Kazakhstan_Kangju 0.001217 4.981254
  144. details: Irula.DG Kazakhstan_Kangju -0.002377 -8.045909
  145. dscore: Kazakhstan_Kangju f4: -0.000491 Z: -2.045834
  146.  
  147. gendstat: Mbuti.DG EHG -0.157
  148. gendstat: Mbuti.DG CHG -0.608
  149. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 1.240
  150. gendstat: Mbuti.DG WSHG 0.132
  151. gendstat: Mbuti.DG PPN 0.715
  152. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.007
  153. gendstat: Mbuti.DG Iran_GanjDareh_N 1.157
  154. gendstat: Mbuti.DG Turkey_N -0.115
  155. gendstat: Mbuti.DG Tarim_EMBA1 0.021
  156. gendstat: Mbuti.DG ONG.SG 0.350
  157. gendstat: Mbuti.DG Kazakhstan_Kangju -2.046
  158. gendstat: EHG CHG -0.453
  159. gendstat: EHG Russia_Shamanka_Eneolithic.SG 1.319
  160. gendstat: EHG WSHG 0.321
  161. gendstat: EHG PPN 0.879
  162. gendstat: EHG Serbia_IronGates_Mesolithic 0.203
  163. gendstat: EHG Iran_GanjDareh_N 1.198
  164. gendstat: EHG Turkey_N 0.075
  165. gendstat: EHG Tarim_EMBA1 0.213
  166. gendstat: EHG ONG.SG 0.437
  167. gendstat: EHG Kazakhstan_Kangju -1.912
  168. gendstat: CHG Russia_Shamanka_Eneolithic.SG 1.627
  169. gendstat: CHG WSHG 0.673
  170. gendstat: CHG PPN 1.323
  171. gendstat: CHG Serbia_IronGates_Mesolithic 0.661
  172. gendstat: CHG Iran_GanjDareh_N 1.799
  173. gendstat: CHG Turkey_N 0.619
  174. gendstat: CHG Tarim_EMBA1 0.586
  175. gendstat: CHG ONG.SG 0.843
  176. gendstat: CHG Kazakhstan_Kangju -1.250
  177. gendstat: Russia_Shamanka_Eneolithic.SG WSHG -0.971
  178. gendstat: Russia_Shamanka_Eneolithic.SG PPN -0.394
  179. gendstat: Russia_Shamanka_Eneolithic.SG Serbia_IronGates_Mesolithic -1.252
  180. gendstat: Russia_Shamanka_Eneolithic.SG Iran_GanjDareh_N -0.076
  181. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -1.353
  182. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA1 -1.178
  183. gendstat: Russia_Shamanka_Eneolithic.SG ONG.SG -0.903
  184. gendstat: Russia_Shamanka_Eneolithic.SG Kazakhstan_Kangju -3.328
  185. gendstat: WSHG PPN 0.510
  186. gendstat: WSHG Serbia_IronGates_Mesolithic -0.152
  187. gendstat: WSHG Iran_GanjDareh_N 0.830
  188. gendstat: WSHG Turkey_N -0.233
  189. gendstat: WSHG Tarim_EMBA1 -0.139
  190. gendstat: WSHG ONG.SG 0.174
  191. gendstat: WSHG Kazakhstan_Kangju -2.023
  192. gendstat: PPN Serbia_IronGates_Mesolithic -0.864
  193. gendstat: PPN Iran_GanjDareh_N 0.346
  194. gendstat: PPN Turkey_N -1.212
  195. gendstat: PPN Tarim_EMBA1 -0.630
  196. gendstat: PPN ONG.SG -0.325
  197. gendstat: PPN Kazakhstan_Kangju -3.018
  198. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 1.184
  199. gendstat: Serbia_IronGates_Mesolithic Turkey_N -0.138
  200. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 0.031
  201. gendstat: Serbia_IronGates_Mesolithic ONG.SG 0.334
  202. gendstat: Serbia_IronGates_Mesolithic Kazakhstan_Kangju -2.556
  203. gendstat: Iran_GanjDareh_N Turkey_N -1.473
  204. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -0.976
  205. gendstat: Iran_GanjDareh_N ONG.SG -0.665
  206. gendstat: Iran_GanjDareh_N Kazakhstan_Kangju -3.519
  207. gendstat: Turkey_N Tarim_EMBA1 0.121
  208. gendstat: Turkey_N ONG.SG 0.440
  209. gendstat: Turkey_N Kazakhstan_Kangju -2.727
  210. gendstat: Tarim_EMBA1 ONG.SG 0.290
  211. gendstat: Tarim_EMBA1 Kazakhstan_Kangju -2.005
  212. gendstat: ONG.SG Kazakhstan_Kangju -2.113
  213.  
  214. ##end of qpAdm: 1.291 seconds cpu 0.684 Mbytes in use
  215.  
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