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misnomer001

megiddo outlier arm_mba

misnomer001
Jun 1st, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1777850924
  4. read 1073741824 bytes
  5. read 2147483648 bytes
  6. read 2202161218 bytes
  7. packed geno read OK
  8. end of inpack
  9.  
  10. left pops:
  11. Megiddo_MLBA_outlierfamily
  12. Megiddo_MLBA
  13. Armenia_MBA.SG
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Botai
  26. Russia_MLBA_Sintashta
  27. Uzbekistan_BA_Dzharkutan1
  28.  
  29. 0 Megiddo_MLBA_outlierfamily 2
  30. 1 Megiddo_MLBA 22
  31. 2 Armenia_MBA.SG 4
  32. 3 Cameroon_SMA.DG 1
  33. 4 EEHG 5
  34. 5 WSHG 3
  35. 6 PPN 11
  36. 7 WEHG 33
  37. 8 Anatolia_N 22
  38. 9 Iran_GanjDareh_N 8
  39. 10 Russia_UstBelaya_Angara 8
  40. 11 ONG.SG 6
  41. 12 Botai 2
  42. 13 Russia_MLBA_Sintashta 36
  43. 14 Uzbekistan_BA_Dzharkutan1 7
  44. jackknife block size: 0.050
  45. snps: 1150506 indivs: 170
  46. number of blocks for block jackknife: 713
  47. ## ncols: 1150506
  48. coverage: Megiddo_MLBA_outlierfamily 625041
  49. coverage: Megiddo_MLBA 989505
  50. coverage: Armenia_MBA.SG 919421
  51. coverage: Cameroon_SMA.DG 1140138
  52. coverage: EEHG 1052093
  53. coverage: WSHG 858019
  54. coverage: PPN 847771
  55. coverage: WEHG 1140599
  56. coverage: Anatolia_N 1139031
  57. coverage: Iran_GanjDareh_N 1057358
  58. coverage: Russia_UstBelaya_Angara 1072574
  59. coverage: ONG.SG 1143397
  60. coverage: Botai 926654
  61. coverage: Russia_MLBA_Sintashta 1128449
  62. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  63. dof (jackknife): 622.504
  64. numsnps used: 1150506
  65. codimension 1
  66. f4info:
  67. f4rank: 1 dof: 10 chisq: 8.549 tail: 0.575332075 dofdiff: 12 chisqdiff: -8.549 taildiff: 1
  68. B:
  69. scale 1.000
  70. EEHG 1.444
  71. WSHG 1.476
  72. PPN -1.407
  73. WEHG 0.859
  74. Anatolia_N -0.698
  75. Iran_GanjDareh_N 0.360
  76. Russia_UstBelaya_Angara 0.747
  77. ONG.SG 0.273
  78. Botai 1.451
  79. Russia_MLBA_Sintashta 0.786
  80. Uzbekistan_BA_Dzharkutan1 0.213
  81. A:
  82. scale 1304.095
  83. Megiddo_MLBA -1.204
  84. Armenia_MBA.SG 0.742
  85.  
  86.  
  87. full rank
  88. f4info:
  89. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 8.549 taildiff: 0.575332075
  90. B:
  91. scale 1024.813 1744.608
  92. EEHG -1.340 1.456
  93. WSHG -1.647 0.891
  94. PPN 1.047 -2.151
  95. WEHG -1.142 0.044
  96. Anatolia_N 0.593 -0.870
  97. Iran_GanjDareh_N -0.276 0.512
  98. Russia_UstBelaya_Angara -0.842 0.433
  99. ONG.SG -0.310 0.217
  100. Botai -1.416 1.405
  101. Russia_MLBA_Sintashta -0.905 0.390
  102. Uzbekistan_BA_Dzharkutan1 -0.188 0.280
  103. A:
  104. scale 1.414 1.414
  105. Megiddo_MLBA 1.414 0.000
  106. Armenia_MBA.SG 0.000 1.414
  107.  
  108.  
  109. best coefficients: 0.381 0.619
  110. Jackknife mean: 0.382459132 0.617540868
  111. std. errors: 0.056 0.056
  112.  
  113. error covariance (* 1,000,000)
  114. 3143 -3143
  115. -3143 3143
  116.  
  117.  
  118. summ: Megiddo_MLBA_outlierfamily 2 0.575332 0.382 0.618 3143 -3143 3143
  119.  
  120. fixed pat wt dof chisq tail prob
  121. 00 0 10 8.549 0.575332 0.381 0.619
  122. 01 1 11 145.937 1.00609e-25 1.000 0.000
  123. 10 1 11 44.226 6.63372e-06 0.000 1.000
  124. best pat: 00 0.575332 - -
  125. best pat: 10 6.63372e-06 chi(nested): 35.676 p-value for nested model: 2.32984e-09
  126.  
  127. coeffs: 0.381 0.619
  128.  
  129. ## dscore:: f_4(Base, Fit, Rbase, right2)
  130. ## genstat:: f_4(Base, Fit, right1, right2)
  131.  
  132. details: Megiddo_MLBA EEHG -0.001307 -4.469990
  133. details: Armenia_MBA.SG EEHG 0.000835 2.332913
  134. dscore: EEHG f4: 0.000018 Z: 0.059431
  135.  
  136. details: Megiddo_MLBA WSHG -0.001607 -4.813503
  137. details: Armenia_MBA.SG WSHG 0.000511 1.229018
  138. dscore: WSHG f4: -0.000296 Z: -0.824898
  139.  
  140. details: Megiddo_MLBA PPN 0.001022 3.428986
  141. details: Armenia_MBA.SG PPN -0.001233 -3.295508
  142. dscore: PPN f4: -0.000374 Z: -1.159486
  143.  
  144. details: Megiddo_MLBA WEHG -0.001115 -3.917466
  145. details: Armenia_MBA.SG WEHG 0.000025 0.065750
  146. dscore: WEHG f4: -0.000409 Z: -1.270335
  147.  
  148. details: Megiddo_MLBA Anatolia_N 0.000578 2.197529
  149. details: Armenia_MBA.SG Anatolia_N -0.000499 -1.487482
  150. dscore: Anatolia_N f4: -0.000088 Z: -0.307541
  151.  
  152. details: Megiddo_MLBA Iran_GanjDareh_N -0.000269 -1.030609
  153. details: Armenia_MBA.SG Iran_GanjDareh_N 0.000293 0.885851
  154. dscore: Iran_GanjDareh_N f4: 0.000079 Z: 0.278674
  155.  
  156. details: Megiddo_MLBA Russia_UstBelaya_Angara -0.000822 -3.008990
  157. details: Armenia_MBA.SG Russia_UstBelaya_Angara 0.000248 0.730367
  158. dscore: Russia_UstBelaya_Angara f4: -0.000160 Z: -0.544074
  159.  
  160. details: Megiddo_MLBA ONG.SG -0.000302 -1.111499
  161. details: Armenia_MBA.SG ONG.SG 0.000125 0.358849
  162. dscore: ONG.SG f4: -0.000038 Z: -0.127139
  163.  
  164. details: Megiddo_MLBA Botai -0.001381 -4.434580
  165. details: Armenia_MBA.SG Botai 0.000805 2.129665
  166. dscore: Botai f4: -0.000028 Z: -0.085986
  167.  
  168. details: Megiddo_MLBA Russia_MLBA_Sintashta -0.000883 -3.461608
  169. details: Armenia_MBA.SG Russia_MLBA_Sintashta 0.000224 0.703593
  170. dscore: Russia_MLBA_Sintashta f4: -0.000198 Z: -0.722924
  171.  
  172. details: Megiddo_MLBA Uzbekistan_BA_Dzharkutan1 -0.000183 -0.755888
  173. details: Armenia_MBA.SG Uzbekistan_BA_Dzharkutan1 0.000160 0.528865
  174. dscore: Uzbekistan_BA_Dzharkutan1 f4: 0.000030 Z: 0.113259
  175.  
  176. gendstat: Cameroon_SMA.DG EEHG 0.059
  177. gendstat: Cameroon_SMA.DG WSHG -0.825
  178. gendstat: Cameroon_SMA.DG PPN -1.159
  179. gendstat: Cameroon_SMA.DG WEHG -1.270
  180. gendstat: Cameroon_SMA.DG Anatolia_N -0.308
  181. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 0.279
  182. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara -0.544
  183. gendstat: Cameroon_SMA.DG ONG.SG -0.127
  184. gendstat: Cameroon_SMA.DG Botai -0.086
  185. gendstat: Cameroon_SMA.DG Russia_MLBA_Sintashta -0.723
  186. gendstat: Cameroon_SMA.DG Uzbekistan_BA_Dzharkutan1 0.113
  187. gendstat: EEHG WSHG -1.182
  188. gendstat: EEHG PPN -1.290
  189. gendstat: EEHG WEHG -1.942
  190. gendstat: EEHG Anatolia_N -0.443
  191. gendstat: EEHG Iran_GanjDareh_N 0.219
  192. gendstat: EEHG Russia_UstBelaya_Angara -0.708
  193. gendstat: EEHG ONG.SG -0.198
  194. gendstat: EEHG Botai -0.174
  195. gendstat: EEHG Russia_MLBA_Sintashta -1.050
  196. gendstat: EEHG Uzbekistan_BA_Dzharkutan1 0.046
  197. gendstat: WSHG PPN -0.221
  198. gendstat: WSHG WEHG -0.410
  199. gendstat: WSHG Anatolia_N 0.685
  200. gendstat: WSHG Iran_GanjDareh_N 1.199
  201. gendstat: WSHG Russia_UstBelaya_Angara 0.500
  202. gendstat: WSHG ONG.SG 0.842
  203. gendstat: WSHG Botai 0.985
  204. gendstat: WSHG Russia_MLBA_Sintashta 0.379
  205. gendstat: WSHG Uzbekistan_BA_Dzharkutan1 1.134
  206. gendstat: PPN WEHG -0.134
  207. gendstat: PPN Anatolia_N 1.348
  208. gendstat: PPN Iran_GanjDareh_N 1.507
  209. gendstat: PPN Russia_UstBelaya_Angara 0.741
  210. gendstat: PPN ONG.SG 1.105
  211. gendstat: PPN Botai 1.045
  212. gendstat: PPN Russia_MLBA_Sintashta 0.731
  213. gendstat: PPN Uzbekistan_BA_Dzharkutan1 1.543
  214. gendstat: WEHG Anatolia_N 1.573
  215. gendstat: WEHG Iran_GanjDareh_N 1.791
  216. gendstat: WEHG Russia_UstBelaya_Angara 1.007
  217. gendstat: WEHG ONG.SG 1.340
  218. gendstat: WEHG Botai 1.370
  219. gendstat: WEHG Russia_MLBA_Sintashta 1.210
  220. gendstat: WEHG Uzbekistan_BA_Dzharkutan1 1.876
  221. gendstat: Anatolia_N Iran_GanjDareh_N 0.690
  222. gendstat: Anatolia_N Russia_UstBelaya_Angara -0.300
  223. gendstat: Anatolia_N ONG.SG 0.197
  224. gendstat: Anatolia_N Botai 0.208
  225. gendstat: Anatolia_N Russia_MLBA_Sintashta -0.726
  226. gendstat: Anatolia_N Uzbekistan_BA_Dzharkutan1 0.614
  227. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara -0.981
  228. gendstat: Iran_GanjDareh_N ONG.SG -0.460
  229. gendstat: Iran_GanjDareh_N Botai -0.359
  230. gendstat: Iran_GanjDareh_N Russia_MLBA_Sintashta -1.239
  231. gendstat: Iran_GanjDareh_N Uzbekistan_BA_Dzharkutan1 -0.268
  232. gendstat: Russia_UstBelaya_Angara ONG.SG 0.566
  233. gendstat: Russia_UstBelaya_Angara Botai 0.523
  234. gendstat: Russia_UstBelaya_Angara Russia_MLBA_Sintashta -0.185
  235. gendstat: Russia_UstBelaya_Angara Uzbekistan_BA_Dzharkutan1 0.862
  236. gendstat: ONG.SG Botai 0.034
  237. gendstat: ONG.SG Russia_MLBA_Sintashta -0.686
  238. gendstat: ONG.SG Uzbekistan_BA_Dzharkutan1 0.289
  239. gendstat: Botai Russia_MLBA_Sintashta -0.690
  240. gendstat: Botai Uzbekistan_BA_Dzharkutan1 0.215
  241. gendstat: Russia_MLBA_Sintashta Uzbekistan_BA_Dzharkutan1 1.305
  242.  
  243. ##end of qpAdm: 425.730 seconds cpu 1294.426 Mbytes in use
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