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ImportT1MRI_after_manual_database_creation_prior

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Nov 22nd, 2018
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  1.  
  2. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> brainvisa &
  3. [1] 3009
  4. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> Loading toolbox cortical_surface
  5. Loading toolbox data management
  6. Loading toolbox datamind
  7. Loading toolbox freesurfer
  8. Loading toolbox morphologist
  9. Loading toolbox spm
  10. Loading toolbox structural_analysis
  11. Loading toolbox tools
  12. Loading toolbox viewers
  13. Loading toolbox My processes
  14. The log file for this session is
  15. '/home/homeGlobal/darasan/.brainvisa/brainvisa.log'
  16. exec: /home/brainvisauser/brainvisa-4.6.0/brainvisa/toolboxes/morphologist/startup.py
  17. /mnt2: parse directories and insert items
  18. /mnt2: 3 files are stored as 3 DiskItems in 0 seconds
  19. warning: u'/mnt2' has no uuid
  20.  
  21. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~>
  22. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2
  23. database-2.3.sqlite database-2.3.sqlite.minf database_fso.html database_fso.html.minf database_settings.minf
  24. [1]+ Done brainvisa
  25. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> bash /mnt3/import.sh /home/homeGlobal/darasan/test_subj 100206_1-T1w_acpc_dc_restore_1mm.nii.gz
  26. @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ IMPORTING 100206_1-T1w_acpc_dc_restore_1mm
  27. DATABASE MOUNTED /mnt2
  28. SUBJECT NIFTI DIR MOUNTED /home/homeGlobal/darasan/test_subj
  29. SUBJECT NIFTI FILE NAME 100206_1-T1w_acpc_dc_restore_1mm.nii.gz
  30. SUBJECT NIFTI PREFIX 100206_1-T1w_acpc_dc_restore_1mm
  31. Loading toolbox cortical_surface
  32. Loading toolbox data management
  33. Loading toolbox datamind
  34. Loading toolbox freesurfer
  35. Loading toolbox morphologist
  36. Loading toolbox spm
  37. Loading toolbox structural_analysis
  38. Loading toolbox tools
  39. Loading toolbox viewers
  40. Loading toolbox My processes
  41. The log file for this session is
  42. '/home/homeGlobal/darasan/.brainvisa/brainvisa.log'
  43. Headless Anatomist running in normal (non-headless) mode
  44. exec: /home/brainvisauser/brainvisa-4.6.0/brainvisa/toolboxes/morphologist/startup.py
  45.  
  46. Process Import T1 MRI started on 2018/11/22 07:55
  47. filein : /tmp/tmpaxJ8d5.nii.gz
  48. fileout : /mnt2/subjects/100206_1-T1w_acpc_dc_restore_1mm/t1mri/default_acquisition/100206_1-T1w_acpc_dc_restore_1mm.nii.gz
  49. encoding: Binary
  50. normal : 0
  51. rescale : 1
  52. format :
  53. type : S16
  54. objtype :
  55. xdim : 0
  56. ydim : 0
  57. zdim : 0
  58. imin : default
  59. imax : default
  60. omin : 0
  61. omax : 4095
  62. reading /tmp/tmpaxJ8d5.nii.gz as Volume / FLOAT...
  63. reading done
  64. convert to Volume / S16
  65. converting data...
  66. convert done
  67. writing /mnt2/subjects/100206_1-T1w_acpc_dc_restore_1mm/t1mri/default_acquisition/100206_1-T1w_acpc_dc_restore_1mm.nii.gz...
  68. done
  69. Process Import T1 MRI finished on 2018/11/22 07:55 (4 seconds)
  70. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2
  71. database-2.3.sqlite database-2.3.sqlite.minf database_fso.html database_fso.html.minf database_settings.minf subjects subjects.minf
  72. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~>
  73. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2/*
  74. /mnt2/database-2.3.sqlite /mnt2/database-2.3.sqlite.minf /mnt2/database_fso.html /mnt2/database_fso.html.minf /mnt2/database_settings.minf /mnt2/subjects.minf
  75.  
  76. /mnt2/subjects:
  77. 100206_1-T1w_acpc_dc_restore_1mm 100206_1-T1w_acpc_dc_restore_1mm.minf
  78. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2/*/*
  79. /mnt2/subjects/100206_1-T1w_acpc_dc_restore_1mm.minf
  80.  
  81. /mnt2/subjects/100206_1-T1w_acpc_dc_restore_1mm:
  82. t1mri
  83. Singularity brainvisa_4_6_0_xenial_updatedb_cmdline-2018-11-20-15fd7d8e3095.simg:~> ls /mnt2/*/*/*
  84. default_acquisition default_acquisition.minf
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