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misnomer001

yamnaya ozera geoksyur pass

misnomer001
Feb 8th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1861404644
  4. read 1073741824 bytes
  5. read 1324255962 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Ukraine_Yamnaya_Ozera
  11. EEHG
  12. Georgia_Kotias.SG
  13. Ukraine_Globular_Amphora
  14. Geoksyur_EN
  15.  
  16. right pops:
  17. Russia_MA1_HG
  18. Italy_Villabruna
  19. Russia_Kostenki14
  20. Luxembourg_Loschbour
  21. Anatolia_N
  22. Czech_Vestonice16
  23. Morocco_Iberomaurusian
  24. Russia_Shamanka_EN.SG
  25. Georgia_Satsurblia.SG
  26. Ganj_Dareh_N
  27. Onge.DG
  28. SE_Iberia_MLN
  29. PPN
  30. WEHG
  31.  
  32. 0 Ukraine_Yamnaya_Ozera 1
  33. 1 EEHG 5
  34. 2 Georgia_Kotias.SG 1
  35. 3 Ukraine_Globular_Amphora 3
  36. 4 Geoksyur_EN 21
  37. 5 Russia_MA1_HG 1
  38. 6 Italy_Villabruna 1
  39. 7 Russia_Kostenki14 1
  40. 8 Luxembourg_Loschbour 1
  41. 9 Anatolia_N 23
  42. 10 Czech_Vestonice16 1
  43. 11 Morocco_Iberomaurusian 6
  44. 12 Russia_Shamanka_EN.SG 10
  45. 13 Georgia_Satsurblia.SG 1
  46. 14 Ganj_Dareh_N 8
  47. 15 Onge.DG 2
  48. 16 SE_Iberia_MLN 14
  49. 17 PPN 8
  50. 18 WEHG 36
  51. jackknife block size: 0.050
  52. snps: 1150471 indivs: 144
  53. number of blocks for block jackknife: 713
  54. ## ncols: 1150471
  55. coverage: Ukraine_Yamnaya_Ozera 601867
  56. coverage: EEHG 1052093
  57. coverage: Georgia_Kotias.SG 1149097
  58. coverage: Ukraine_Globular_Amphora 1036892
  59. coverage: Geoksyur_EN 1018577
  60. coverage: Russia_MA1_HG 805960
  61. coverage: Italy_Villabruna 883779
  62. coverage: Russia_Kostenki14 1068326
  63. coverage: Luxembourg_Loschbour 460892
  64. coverage: Anatolia_N 1136560
  65. coverage: Czech_Vestonice16 732091
  66. coverage: Morocco_Iberomaurusian 1101342
  67. coverage: Russia_Shamanka_EN.SG 1149998
  68. coverage: Georgia_Satsurblia.SG 801311
  69. coverage: Ganj_Dareh_N 1057358
  70. coverage: Onge.DG 1120748
  71. coverage: SE_Iberia_MLN 985553
  72. coverage: PPN 835499
  73. coverage: WEHG 1141246
  74. dof (jackknife): 616.908
  75. numsnps used: 1150471
  76. codimension 1
  77. f4info:
  78. f4rank: 3 dof: 10 chisq: 17.083 tail: 0.072540537 dofdiff: 12 chisqdiff: -17.083 taildiff: 1
  79. B:
  80. scale 1.000 1.000 1.000
  81. Italy_Villabruna 0.656 1.382 0.916
  82. Russia_Kostenki14 0.721 0.111 -0.141
  83. Luxembourg_Loschbour 0.368 0.772 0.786
  84. Anatolia_N 1.634 0.405 -0.112
  85. Czech_Vestonice16 0.746 0.336 0.052
  86. Morocco_Iberomaurusian 1.133 -0.167 -0.332
  87. Russia_Shamanka_EN.SG 0.626 -0.478 -0.053
  88. Georgia_Satsurblia.SG 0.904 -1.576 1.742
  89. Ganj_Dareh_N 1.154 -2.059 -2.460
  90. Onge.DG 0.798 -0.583 -0.449
  91. SE_Iberia_MLN 1.355 0.721 0.218
  92. PPN 1.452 0.089 -0.609
  93. WEHG 0.530 1.536 1.299
  94. A:
  95. scale 414.033 761.567 2011.241
  96. EEHG -1.637 0.509 0.253
  97. Georgia_Kotias.SG 0.311 -1.294 1.893
  98. Ukraine_Globular_Amphora 1.106 1.187 0.081
  99. Geoksyur_EN 0.035 -0.809 -0.589
  100.  
  101.  
  102. full rank
  103. f4info:
  104. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 17.083 taildiff: 0.072540537
  105. B:
  106. scale 254.078 564.893 294.683 780.951
  107. Italy_Villabruna -0.314 -0.279 1.333 -0.998
  108. Russia_Kostenki14 -0.735 0.152 0.646 -0.019
  109. Luxembourg_Loschbour -0.130 0.037 0.780 -0.502
  110. Anatolia_N -1.563 0.386 1.563 -0.033
  111. Czech_Vestonice16 -0.525 0.382 1.009 0.394
  112. Morocco_Iberomaurusian -1.159 0.611 0.901 0.472
  113. Russia_Shamanka_EN.SG -0.698 0.763 0.347 0.597
  114. Georgia_Satsurblia.SG -1.088 2.944 0.095 1.131
  115. Ganj_Dareh_N -1.507 1.433 0.097 2.716
  116. Onge.DG -0.887 0.824 0.463 0.869
  117. SE_Iberia_MLN -1.154 0.272 1.564 -0.183
  118. PPN -1.481 0.252 1.200 0.194
  119. WEHG -0.174 -0.331 1.297 -1.239
  120. A:
  121. scale 2.000 2.000 2.000 2.000
  122. EEHG 2.000 0.000 0.000 0.000
  123. Georgia_Kotias.SG 0.000 2.000 0.000 0.000
  124. Ukraine_Globular_Amphora 0.000 0.000 2.000 0.000
  125. Geoksyur_EN 0.000 0.000 0.000 2.000
  126.  
  127.  
  128. best coefficients: 0.217 0.087 0.283 0.413
  129. Jackknife mean: 0.216832899 0.087850613 0.283311837 0.412004651
  130. std. errors: 0.023 0.056 0.026 0.055
  131.  
  132. error covariance (* 1,000,000)
  133. 513 -115 -308 -89
  134. -115 3126 -227 -2783
  135. -308 -227 679 -144
  136. -89 -2783 -144 3016
  137.  
  138.  
  139. summ: Ukraine_Yamnaya_Ozera 4 0.072541 0.217 0.088 0.283 0.412 513 -115 -308 -89 3126 ...
  140. -227 -2783 679 -144 3016
  141.  
  142. fixed pat wt dof chisq tail prob
  143. 0000 0 10 17.083 0.0725405 0.217 0.087 0.283 0.413
  144. 0001 1 11 71.661 5.89943e-11 0.222 0.492 0.285 0.000
  145. 0010 1 11 257.602 0 0.150 2.737 0.000 -1.887 infeasible
  146. 0100 1 11 21.059 0.032765 0.218 0.000 0.293 0.489
  147. 1000 1 11 101.055 1.10385e-16 0.000 0.102 0.426 0.471
  148. 0011 2 12 179.640 0 0.327 0.673 0.000 0.000
  149. 0101 2 12 378.286 0 0.374 0.000 0.626 0.000
  150. 0110 2 12 134.446 7.88501e-23 0.368 0.000 0.000 0.632
  151. 1001 2 12 170.795 3.28235e-30 0.000 0.593 0.407 0.000
  152. 1010 2 12 285.483 0 0.000 3.190 0.000 -2.190 infeasible
  153. 1100 2 12 110.873 4.01972e-18 0.000 0.000 0.438 0.562
  154. 0111 3 13 838.803 0 1.000 0.000 0.000 0.000
  155. 1011 3 13 317.035 0 0.000 1.000 0.000 0.000
  156. 1101 3 13 554.867 0 0.000 0.000 1.000 0.000
  157. 1110 3 13 437.462 0 0.000 0.000 0.000 1.000
  158. best pat: 0000 0.0725405 - -
  159. best pat: 0100 0.032765 chi(nested): 3.976 p-value for nested model: 0.046162
  160. best pat: 1100 4.01972e-18 chi(nested): 89.814 p-value for nested model: 2.61589e-21
  161. best pat: 1011 6.50505e-60 not nested
  162.  
  163. coeffs: 0.217 0.087 0.283 0.413
  164.  
  165. ## dscore:: f_4(Base, Fit, Rbase, right2)
  166. ## genstat:: f_4(Base, Fit, right1, right2)
  167.  
  168. details: EEHG Italy_Villabruna -0.001236 -2.716152
  169. details: Georgia_Kotias.SG Italy_Villabruna -0.000494 -1.122359
  170. details: Ukraine_Globular_Amphora Italy_Villabruna 0.004525 10.964590
  171. details: Geoksyur_EN Italy_Villabruna -0.001278 -3.372174
  172. dscore: Italy_Villabruna f4: 0.000444 Z: 1.236354
  173.  
  174. details: EEHG Russia_Kostenki14 -0.002894 -7.257586
  175. details: Georgia_Kotias.SG Russia_Kostenki14 0.000270 0.632130
  176. details: Ukraine_Globular_Amphora Russia_Kostenki14 0.002192 5.843095
  177. details: Geoksyur_EN Russia_Kostenki14 -0.000025 -0.074709
  178. dscore: Russia_Kostenki14 f4: 0.000007 Z: 0.023080
  179.  
  180. details: EEHG Luxembourg_Loschbour -0.000513 -1.757735
  181. details: Georgia_Kotias.SG Luxembourg_Loschbour 0.000065 0.236747
  182. details: Ukraine_Globular_Amphora Luxembourg_Loschbour 0.002647 9.649023
  183. details: Geoksyur_EN Luxembourg_Loschbour -0.000643 -2.413173
  184. dscore: Luxembourg_Loschbour f4: 0.000379 Z: 1.593092
  185.  
  186. details: EEHG Anatolia_N -0.006150 -14.820877
  187. details: Georgia_Kotias.SG Anatolia_N 0.000683 1.595052
  188. details: Ukraine_Globular_Amphora Anatolia_N 0.005304 13.519370
  189. details: Geoksyur_EN Anatolia_N -0.000042 -0.114842
  190. dscore: Anatolia_N f4: 0.000213 Z: 0.622428
  191.  
  192. details: EEHG Czech_Vestonice16 -0.002066 -5.108861
  193. details: Georgia_Kotias.SG Czech_Vestonice16 0.000676 1.596447
  194. details: Ukraine_Globular_Amphora Czech_Vestonice16 0.003424 8.673740
  195. details: Geoksyur_EN Czech_Vestonice16 0.000505 1.384119
  196. dscore: Czech_Vestonice16 f4: 0.000790 Z: 2.329332
  197.  
  198. details: EEHG Morocco_Iberomaurusian -0.004560 -11.344100
  199. details: Georgia_Kotias.SG Morocco_Iberomaurusian 0.001082 2.513620
  200. details: Ukraine_Globular_Amphora Morocco_Iberomaurusian 0.003059 8.166328
  201. details: Geoksyur_EN Morocco_Iberomaurusian 0.000604 1.718567
  202. dscore: Morocco_Iberomaurusian f4: 0.000222 Z: 0.677516
  203.  
  204. details: EEHG Russia_Shamanka_EN.SG -0.002748 -7.020854
  205. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG 0.001350 3.347985
  206. details: Ukraine_Globular_Amphora Russia_Shamanka_EN.SG 0.001179 3.336924
  207. details: Geoksyur_EN Russia_Shamanka_EN.SG 0.000765 2.272621
  208. dscore: Russia_Shamanka_EN.SG f4: 0.000172 Z: 0.545886
  209.  
  210. details: EEHG Georgia_Satsurblia.SG -0.004284 -12.053415
  211. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005212 13.014668
  212. details: Ukraine_Globular_Amphora Georgia_Satsurblia.SG 0.000324 0.935097
  213. details: Geoksyur_EN Georgia_Satsurblia.SG 0.001448 4.580573
  214. dscore: Georgia_Satsurblia.SG f4: 0.000215 Z: 0.731118
  215.  
  216. details: EEHG Ganj_Dareh_N -0.005930 -14.779366
  217. details: Georgia_Kotias.SG Ganj_Dareh_N 0.002537 6.119509
  218. details: Ukraine_Globular_Amphora Ganj_Dareh_N 0.000328 0.894467
  219. details: Geoksyur_EN Ganj_Dareh_N 0.003477 10.232331
  220. dscore: Ganj_Dareh_N f4: 0.000464 Z: 1.447464
  221.  
  222. details: EEHG Onge.DG -0.003491 -8.716941
  223. details: Georgia_Kotias.SG Onge.DG 0.001459 3.395632
  224. details: Ukraine_Globular_Amphora Onge.DG 0.001572 4.190841
  225. details: Geoksyur_EN Onge.DG 0.001113 3.182840
  226. dscore: Onge.DG f4: 0.000275 Z: 0.841014
  227.  
  228. details: EEHG SE_Iberia_MLN -0.004543 -11.486366
  229. details: Georgia_Kotias.SG SE_Iberia_MLN 0.000482 1.178237
  230. details: Ukraine_Globular_Amphora SE_Iberia_MLN 0.005307 14.151585
  231. details: Geoksyur_EN SE_Iberia_MLN -0.000234 -0.672620
  232. dscore: SE_Iberia_MLN f4: 0.000465 Z: 1.420532
  233.  
  234. details: EEHG PPN -0.005829 -14.073295
  235. details: Georgia_Kotias.SG PPN 0.000446 1.062911
  236. details: Ukraine_Globular_Amphora PPN 0.004073 10.603726
  237. details: Geoksyur_EN PPN 0.000248 0.681901
  238. dscore: PPN f4: 0.000032 Z: 0.095432
  239.  
  240. details: EEHG WEHG -0.000683 -1.695245
  241. details: Georgia_Kotias.SG WEHG -0.000587 -1.473945
  242. details: Ukraine_Globular_Amphora WEHG 0.004401 12.071632
  243. details: Geoksyur_EN WEHG -0.001587 -4.746906
  244. dscore: WEHG f4: 0.000393 Z: 1.249083
  245.  
  246. gendstat: Russia_MA1_HG Italy_Villabruna 1.236
  247. gendstat: Russia_MA1_HG Russia_Kostenki14 0.023
  248. gendstat: Russia_MA1_HG Luxembourg_Loschbour 1.593
  249. gendstat: Russia_MA1_HG Anatolia_N 0.622
  250. gendstat: Russia_MA1_HG Czech_Vestonice16 2.329
  251. gendstat: Russia_MA1_HG Morocco_Iberomaurusian 0.678
  252. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 0.546
  253. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG 0.731
  254. gendstat: Russia_MA1_HG Ganj_Dareh_N 1.447
  255. gendstat: Russia_MA1_HG Onge.DG 0.841
  256. gendstat: Russia_MA1_HG SE_Iberia_MLN 1.421
  257. gendstat: Russia_MA1_HG PPN 0.095
  258. gendstat: Russia_MA1_HG WEHG 1.249
  259. gendstat: Italy_Villabruna Russia_Kostenki14 -1.355
  260. gendstat: Italy_Villabruna Luxembourg_Loschbour -0.210
  261. gendstat: Italy_Villabruna Anatolia_N -0.800
  262. gendstat: Italy_Villabruna Czech_Vestonice16 0.996
  263. gendstat: Italy_Villabruna Morocco_Iberomaurusian -0.703
  264. gendstat: Italy_Villabruna Russia_Shamanka_EN.SG -0.875
  265. gendstat: Italy_Villabruna Georgia_Satsurblia.SG -0.645
  266. gendstat: Italy_Villabruna Ganj_Dareh_N 0.062
  267. gendstat: Italy_Villabruna Onge.DG -0.504
  268. gendstat: Italy_Villabruna SE_Iberia_MLN 0.072
  269. gendstat: Italy_Villabruna PPN -1.278
  270. gendstat: Italy_Villabruna WEHG -0.218
  271. gendstat: Russia_Kostenki14 Luxembourg_Loschbour 1.192
  272. gendstat: Russia_Kostenki14 Anatolia_N 0.780
  273. gendstat: Russia_Kostenki14 Czech_Vestonice16 2.441
  274. gendstat: Russia_Kostenki14 Morocco_Iberomaurusian 0.766
  275. gendstat: Russia_Kostenki14 Russia_Shamanka_EN.SG 0.608
  276. gendstat: Russia_Kostenki14 Georgia_Satsurblia.SG 0.657
  277. gendstat: Russia_Kostenki14 Ganj_Dareh_N 1.640
  278. gendstat: Russia_Kostenki14 Onge.DG 0.936
  279. gendstat: Russia_Kostenki14 SE_Iberia_MLN 1.659
  280. gendstat: Russia_Kostenki14 PPN 0.087
  281. gendstat: Russia_Kostenki14 WEHG 1.497
  282. gendstat: Luxembourg_Loschbour Anatolia_N -0.556
  283. gendstat: Luxembourg_Loschbour Czech_Vestonice16 1.259
  284. gendstat: Luxembourg_Loschbour Morocco_Iberomaurusian -0.513
  285. gendstat: Luxembourg_Loschbour Russia_Shamanka_EN.SG -0.688
  286. gendstat: Luxembourg_Loschbour Georgia_Satsurblia.SG -0.538
  287. gendstat: Luxembourg_Loschbour Ganj_Dareh_N 0.278
  288. gendstat: Luxembourg_Loschbour Onge.DG -0.331
  289. gendstat: Luxembourg_Loschbour SE_Iberia_MLN 0.296
  290. gendstat: Luxembourg_Loschbour PPN -1.111
  291. gendstat: Luxembourg_Loschbour WEHG 0.056
  292. gendstat: Anatolia_N Czech_Vestonice16 1.994
  293. gendstat: Anatolia_N Morocco_Iberomaurusian 0.045
  294. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.184
  295. gendstat: Anatolia_N Georgia_Satsurblia.SG 0.009
  296. gendstat: Anatolia_N Ganj_Dareh_N 1.176
  297. gendstat: Anatolia_N Onge.DG 0.249
  298. gendstat: Anatolia_N SE_Iberia_MLN 1.692
  299. gendstat: Anatolia_N PPN -0.896
  300. gendstat: Anatolia_N WEHG 1.014
  301. gendstat: Czech_Vestonice16 Morocco_Iberomaurusian -1.838
  302. gendstat: Czech_Vestonice16 Russia_Shamanka_EN.SG -2.036
  303. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG -1.645
  304. gendstat: Czech_Vestonice16 Ganj_Dareh_N -1.091
  305. gendstat: Czech_Vestonice16 Onge.DG -1.588
  306. gendstat: Czech_Vestonice16 SE_Iberia_MLN -1.111
  307. gendstat: Czech_Vestonice16 PPN -2.435
  308. gendstat: Czech_Vestonice16 WEHG -1.405
  309. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG -0.212
  310. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG -0.024
  311. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N 1.023
  312. gendstat: Morocco_Iberomaurusian Onge.DG 0.198
  313. gendstat: Morocco_Iberomaurusian SE_Iberia_MLN 1.040
  314. gendstat: Morocco_Iberomaurusian PPN -0.751
  315. gendstat: Morocco_Iberomaurusian WEHG 0.772
  316. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG 0.156
  317. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N 1.292
  318. gendstat: Russia_Shamanka_EN.SG Onge.DG 0.490
  319. gendstat: Russia_Shamanka_EN.SG SE_Iberia_MLN 1.295
  320. gendstat: Russia_Shamanka_EN.SG PPN -0.525
  321. gendstat: Russia_Shamanka_EN.SG WEHG 0.982
  322. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N 0.922
  323. gendstat: Georgia_Satsurblia.SG Onge.DG 0.198
  324. gendstat: Georgia_Satsurblia.SG SE_Iberia_MLN 0.881
  325. gendstat: Georgia_Satsurblia.SG PPN -0.595
  326. gendstat: Georgia_Satsurblia.SG WEHG 0.631
  327. gendstat: Ganj_Dareh_N Onge.DG -0.745
  328. gendstat: Ganj_Dareh_N SE_Iberia_MLN 0.005
  329. gendstat: Ganj_Dareh_N PPN -1.715
  330. gendstat: Ganj_Dareh_N WEHG -0.307
  331. gendstat: Onge.DG SE_Iberia_MLN 0.734
  332. gendstat: Onge.DG PPN -0.868
  333. gendstat: Onge.DG WEHG 0.455
  334. gendstat: SE_Iberia_MLN PPN -1.940
  335. gendstat: SE_Iberia_MLN WEHG -0.389
  336. gendstat: PPN WEHG 1.536
  337.  
  338. ##end of qpAdm: 247.689 seconds cpu 1478.394 Mbytes in use
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