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Pathan.DG w Loebanr

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Sep 9th, 2022
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  1. qpAdm: parameter file: ./parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: v52.ind
  5. snpname: v52.snp
  6. genotypename: v52.geno
  7. popleft: left.txt
  8. popright: right.txt
  9. inbreed: NO
  10. allsnps: YES
  11. ## qpAdm version: 1520
  12. seed: -711024383
  13. inbreed set NO
  14. inbreed set NO
  15. tmp: /tmp/fsx.50697
  16.  
  17. left pops:
  18. Pathan.DG
  19. Pakistan_Loebanr_IA_o
  20. Irula.DG
  21.  
  22. right pops:
  23. Mbuti.DG
  24. Russia_Karelia_HG
  25. Iran_GanjDareh_N
  26. CHN_Tianyuan
  27. Georgia_Kotias.SG
  28. Russia_Tyumen_HG
  29. Russia_Shamanka_Eneolithic.SG
  30. Turkey_N
  31. ISR_PPNB
  32. Tarim_EMBA
  33. SRB_Iron_Gates_HG
  34.  
  35. codimension 1
  36. f4info:
  37. f4rank: 1 dof: 9 chisq: 10.184 tail: 0.335821315 dofdiff: 11 chisqdiff: -10.184 taildiff: 1
  38. B:
  39. scale 1.000
  40. Russia_Karelia_HG 1.092
  41. Iran_GanjDareh_N 1.025
  42. CHN_Tianyuan -0.584
  43. Georgia_Kotias.SG 1.263
  44. Russia_Tyumen_HG 0.925
  45. Russia_Shamanka_Eneolithic.SG -0.463
  46. Turkey_N 1.246
  47. ISR_PPNB 1.023
  48. Tarim_EMBA 0.830
  49. SRB_Iron_Gates_HG 1.210
  50. A:
  51. scale 110.846
  52. Pakistan_Loebanr_IA_o 0.429
  53. Irula.DG -1.347
  54.  
  55.  
  56. full rank
  57. f4info:
  58. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 10.184 taildiff: 0.335821315
  59. B:
  60. scale 242.096 81.573
  61. Russia_Karelia_HG 1.067 -1.097
  62. Iran_GanjDareh_N 0.923 -1.016
  63. CHN_Tianyuan -0.659 0.534
  64. Georgia_Kotias.SG 0.476 -1.352
  65. Russia_Tyumen_HG 1.555 -0.845
  66. Russia_Shamanka_Eneolithic.SG -0.591 0.417
  67. Turkey_N 0.941 -1.270
  68. ISR_PPNB 0.801 -1.046
  69. Tarim_EMBA 1.042 -0.808
  70. SRB_Iron_Gates_HG 1.403 -1.184
  71. A:
  72. scale 1.414 1.414
  73. Pakistan_Loebanr_IA_o 1.414 0.000
  74. Irula.DG 0.000 1.414
  75.  
  76.  
  77. best coefficients: 0.758 0.242
  78. totmean: 0.758 0.242
  79. boot mean: 0.759 0.241
  80. std. errors: 0.035 0.035
  81.  
  82. error covariance (* 1,000,000)
  83. 1198 -1198
  84. -1198 1198
  85.  
  86.  
  87. summ: Pathan.DG 2 0.335821 0.759 0.241 1198 -1198 1198
  88.  
  89. fixed pat wt dof chisq tail prob
  90. 00 0 9 10.184 0.335821 0.758 0.242
  91. 01 1 10 44.483 2.69504e-06 1.000 0.000
  92. 10 1 10 529.314 0 0.000 1.000
  93. best pat: 00 0.335821 - -
  94. best pat: 01 2.69504e-06 chi(nested): 34.299 p-value for nested model: 4.72589e-09
  95.  
  96. coeffs: 0.758 0.242
  97.  
  98. ## dscore:: f_4(Base, Fit, Rbase, right2)
  99. ## genstat:: f_4(Base, Fit, right1, right2)
  100.  
  101. details: Pakistan_Loebanr_IA_o Russia_Karelia_HG 0.004409 2.254811
  102. details: Irula.DG Russia_Karelia_HG -0.013448 -9.650712
  103. dscore: Russia_Karelia_HG f4: 0.000094 Z: 0.057492
  104.  
  105. details: Pakistan_Loebanr_IA_o Iran_GanjDareh_N 0.003813 2.779154
  106. details: Irula.DG Iran_GanjDareh_N -0.012460 -11.597643
  107. dscore: Iran_GanjDareh_N f4: -0.000119 Z: -0.104208
  108.  
  109. details: Pakistan_Loebanr_IA_o CHN_Tianyuan -0.002721 -1.423757
  110. details: Irula.DG CHN_Tianyuan 0.006547 4.514011
  111. dscore: CHN_Tianyuan f4: -0.000482 Z: -0.298974
  112.  
  113. details: Pakistan_Loebanr_IA_o Georgia_Kotias.SG 0.001967 1.037284
  114. details: Irula.DG Georgia_Kotias.SG -0.016572 -11.539430
  115. dscore: Georgia_Kotias.SG f4: -0.002513 Z: -1.590578
  116.  
  117. details: Pakistan_Loebanr_IA_o Russia_Tyumen_HG 0.006422 3.257561
  118. details: Irula.DG Russia_Tyumen_HG -0.010364 -7.276656
  119. dscore: Russia_Tyumen_HG f4: 0.002366 Z: 1.436806
  120.  
  121. details: Pakistan_Loebanr_IA_o Russia_Shamanka_Eneolithic.SG -0.002440 -1.753618
  122. details: Irula.DG Russia_Shamanka_Eneolithic.SG 0.005108 4.753831
  123. dscore: Russia_Shamanka_Eneolithic.SG f4: -0.000616 Z: -0.524202
  124.  
  125. details: Pakistan_Loebanr_IA_o Turkey_N 0.003886 3.114385
  126. details: Irula.DG Turkey_N -0.015573 -15.933959
  127. dscore: Turkey_N f4: -0.000816 Z: -0.776946
  128.  
  129. details: Pakistan_Loebanr_IA_o ISR_PPNB 0.003310 1.790516
  130. details: Irula.DG ISR_PPNB -0.012826 -9.144069
  131. dscore: ISR_PPNB f4: -0.000589 Z: -0.380960
  132.  
  133. details: Pakistan_Loebanr_IA_o Tarim_EMBA 0.004302 2.531805
  134. details: Irula.DG Tarim_EMBA -0.009909 -8.117982
  135. dscore: Tarim_EMBA f4: 0.000869 Z: 0.613345
  136.  
  137. details: Pakistan_Loebanr_IA_o SRB_Iron_Gates_HG 0.005796 3.911848
  138. details: Irula.DG SRB_Iron_Gates_HG -0.014509 -13.251161
  139. dscore: SRB_Iron_Gates_HG f4: 0.000890 Z: 0.714819
  140.  
  141. gendstat: Mbuti.DG Russia_Karelia_HG 0.057
  142. gendstat: Mbuti.DG Iran_GanjDareh_N -0.104
  143. gendstat: Mbuti.DG CHN_Tianyuan -0.299
  144. gendstat: Mbuti.DG Georgia_Kotias.SG -1.591
  145. gendstat: Mbuti.DG Russia_Tyumen_HG 1.437
  146. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG -0.524
  147. gendstat: Mbuti.DG Turkey_N -0.777
  148. gendstat: Mbuti.DG ISR_PPNB -0.381
  149. gendstat: Mbuti.DG Tarim_EMBA 0.613
  150. gendstat: Mbuti.DG SRB_Iron_Gates_HG 0.715
  151. gendstat: Russia_Karelia_HG Iran_GanjDareh_N -0.142
  152. gendstat: Russia_Karelia_HG CHN_Tianyuan -0.283
  153. gendstat: Russia_Karelia_HG Georgia_Kotias.SG -1.435
  154. gendstat: Russia_Karelia_HG Russia_Tyumen_HG 1.342
  155. gendstat: Russia_Karelia_HG Russia_Shamanka_Eneolithic.SG -0.450
  156. gendstat: Russia_Karelia_HG Turkey_N -0.640
  157. gendstat: Russia_Karelia_HG ISR_PPNB -0.362
  158. gendstat: Russia_Karelia_HG Tarim_EMBA 0.547
  159. gendstat: Russia_Karelia_HG SRB_Iron_Gates_HG 0.563
  160. gendstat: Iran_GanjDareh_N CHN_Tianyuan -0.208
  161. gendstat: Iran_GanjDareh_N Georgia_Kotias.SG -1.639
  162. gendstat: Iran_GanjDareh_N Russia_Tyumen_HG 1.565
  163. gendstat: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.386
  164. gendstat: Iran_GanjDareh_N Turkey_N -0.677
  165. gendstat: Iran_GanjDareh_N ISR_PPNB -0.306
  166. gendstat: Iran_GanjDareh_N Tarim_EMBA 0.761
  167. gendstat: Iran_GanjDareh_N SRB_Iron_Gates_HG 0.872
  168. gendstat: CHN_Tianyuan Georgia_Kotias.SG -1.005
  169. gendstat: CHN_Tianyuan Russia_Tyumen_HG 1.395
  170. gendstat: CHN_Tianyuan Russia_Shamanka_Eneolithic.SG -0.089
  171. gendstat: CHN_Tianyuan Turkey_N -0.201
  172. gendstat: CHN_Tianyuan ISR_PPNB -0.053
  173. gendstat: CHN_Tianyuan Tarim_EMBA 0.759
  174. gendstat: CHN_Tianyuan SRB_Iron_Gates_HG 0.778
  175. gendstat: Georgia_Kotias.SG Russia_Tyumen_HG 2.501
  176. gendstat: Georgia_Kotias.SG Russia_Shamanka_Eneolithic.SG 1.164
  177. gendstat: Georgia_Kotias.SG Turkey_N 1.173
  178. gendstat: Georgia_Kotias.SG ISR_PPNB 1.061
  179. gendstat: Georgia_Kotias.SG Tarim_EMBA 2.004
  180. gendstat: Georgia_Kotias.SG SRB_Iron_Gates_HG 2.167
  181. gendstat: Russia_Tyumen_HG Russia_Shamanka_Eneolithic.SG -1.898
  182. gendstat: Russia_Tyumen_HG Turkey_N -2.068
  183. gendstat: Russia_Tyumen_HG ISR_PPNB -1.565
  184. gendstat: Russia_Tyumen_HG Tarim_EMBA -1.084
  185. gendstat: Russia_Tyumen_HG SRB_Iron_Gates_HG -0.975
  186. gendstat: Russia_Shamanka_Eneolithic.SG Turkey_N -0.169
  187. gendstat: Russia_Shamanka_Eneolithic.SG ISR_PPNB 0.016
  188. gendstat: Russia_Shamanka_Eneolithic.SG Tarim_EMBA 1.178
  189. gendstat: Russia_Shamanka_Eneolithic.SG SRB_Iron_Gates_HG 1.172
  190. gendstat: Turkey_N ISR_PPNB 0.188
  191. gendstat: Turkey_N Tarim_EMBA 1.291
  192. gendstat: Turkey_N SRB_Iron_Gates_HG 1.979
  193. gendstat: ISR_PPNB Tarim_EMBA 0.842
  194. gendstat: ISR_PPNB SRB_Iron_Gates_HG 1.027
  195. gendstat: Tarim_EMBA SRB_Iron_Gates_HG 0.016
  196.  
  197. removing /tmp/fsx.50697
  198. ##end of qpAdm: 0.746 seconds cpu 0.000 Mbytes in use
  199.  
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