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  1. == 2018-06-23 16:45:21,431 easyblock.py:266 INFO This is EasyBuild 3.6.2.dev0 (framework: 3.6.2.dev0, easyblocks: 3.6.2.dev0) on host node3100.skitty.os.
  2. == 2018-06-23 16:45:21,431 easyblock.py:272 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.6.2.dev0-py2.7.egg/easybuild/easyblocks/generic/configuremake.pyo)
  3. == 2018-06-23 16:45:21,431 easyblock.py:818 INFO Build dir set to /tmp/vsc40023/easybuild_build/GMT/4.5.17/foss-2018a
  4. == 2018-06-23 16:45:21,431 config.py:486 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/software
  5. == 2018-06-23 16:45:21,431 easyconfig.py:1697 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1d0bdd0>
  6. == 2018-06-23 16:45:21,431 easyconfig.py:1703 DEBUG Obtained subdir GMT/4.5.17-foss-2018a
  7. == 2018-06-23 16:45:21,431 easyblock.py:859 INFO Software install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/software/GMT/4.5.17-foss-2018a
  8. == 2018-06-23 16:45:21,431 config.py:486 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules
  9. == 2018-06-23 16:45:21,431 easyblock.py:864 INFO Module install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all
  10. == 2018-06-23 16:45:21,432 easyblock.py:251 INFO Init completed for application name GMT version 4.5.17
  11. == 2018-06-23 16:45:21,432 easyblock.py:2754 INFO Obtained application instance of for GMT (easyblock: ConfigureMake)
  12. == 2018-06-23 16:45:21,432 easyblock.py:2767 DEBUG Skip set to False
  13. == 2018-06-23 16:45:21,432 easyconfig.py:1211 WARNING Unable to resolve template value --with-gshhg-dir=%(builddir)s/gshhg-gmt-2.3.7 with dict {'nameletterlower': 'g', 'versionsuffix': '', 'toolchain_name': 'foss', 'namelower': 'gmt', 'version_minor': '5', 'name': 'GMT', 'versionprefix': '', 'version_major': '4', 'nameletter': 'G', 'version_major_minor': '4.5', 'version': '4.5.17', 'toolchain_version': '2018a'}
  14. == 2018-06-23 16:45:21,432 build_log.py:233 INFO building and installing GMT/4.5.17-foss-2018a...
  15. == 2018-06-23 16:45:21,432 easyblock.py:2524 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
  16. == 2018-06-23 16:45:21,432 build_log.py:233 INFO fetching files...
  17. == 2018-06-23 16:45:21,432 easyblock.py:2532 INFO Starting fetch step
  18. == 2018-06-23 16:45:21,432 templates.py:153 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1d0bdd0>
  19. == 2018-06-23 16:45:21,432 templates.py:177 DEBUG version found in easyconfig is 4.5.17
  20. == 2018-06-23 16:45:21,432 templates.py:221 DEBUG name: github_account, config: None
  21. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: name, config: GMT
  22. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: version, config: 4.5.17
  23. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: versionsuffix, config:
  24. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: versionprefix, config:
  25. == 2018-06-23 16:45:21,433 templates.py:153 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1d0bdd0>
  26. == 2018-06-23 16:45:21,433 templates.py:177 DEBUG version found in easyconfig is 4.5.17
  27. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: github_account, config: None
  28. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: name, config: GMT
  29. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: version, config: 4.5.17
  30. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: versionsuffix, config:
  31. == 2018-06-23 16:45:21,433 templates.py:221 DEBUG name: versionprefix, config:
  32. == 2018-06-23 16:45:21,433 easyblock.py:2538 INFO Running method fetch_step part of step fetch
  33. == 2018-06-23 16:45:21,433 easyblock.py:1581 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
  34. == 2018-06-23 16:45:21,434 filetools.py:343 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb
  35. == 2018-06-23 16:45:21,434 tools.py:263 DEBUG Also considering installation prefix /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed...
  36. == 2018-06-23 16:45:21,434 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
  37. == 2018-06-23 16:45:21,434 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-k8v8Xc/files_pr6496/easybuild/easyconfigs
  38. == 2018-06-23 16:45:21,434 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
  39. == 2018-06-23 16:45:21,434 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
  40. == 2018-06-23 16:45:21,434 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/python_dateutil-2.6.1-py2.7.egg/easybuild/easyconfigs
  41. == 2018-06-23 16:45:21,434 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
  42. == 2018-06-23 16:45:21,434 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  43. == 2018-06-23 16:45:21,434 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  44. == 2018-06-23 16:45:21,435 tools.py:272 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
  45. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  46. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/gvo000/gvo00002/JUBE/easybuild/easyconfigs
  47. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/easybuild/easyconfigs
  48. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs
  49. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
  50. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /kyukon/home/gent/vsc400/vsc40023/easybuild/easyconfigs
  51. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
  52. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
  53. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
  54. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
  55. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
  56. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
  57. == 2018-06-23 16:45:21,435 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs
  58. == 2018-06-23 16:45:21,436 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
  59. == 2018-06-23 16:45:21,436 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
  60. == 2018-06-23 16:45:21,436 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
  61. == 2018-06-23 16:45:21,436 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
  62. == 2018-06-23 16:45:21,441 easyblock.py:649 INFO Found file gmt-4.5.17-src.tar.bz2 at /apps/gent/source/g/GMT/gmt-4.5.17-src.tar.bz2
  63. == 2018-06-23 16:45:21,441 easyblock.py:366 DEBUG File /apps/gent/source/g/GMT/gmt-4.5.17-src.tar.bz2 found for source gmt-4.5.17-src.tar.bz2
  64. == 2018-06-23 16:45:21,441 filetools.py:343 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb
  65. == 2018-06-23 16:45:21,441 tools.py:263 DEBUG Also considering installation prefix /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed...
  66. == 2018-06-23 16:45:21,441 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
  67. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-k8v8Xc/files_pr6496/easybuild/easyconfigs
  68. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
  69. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
  70. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/python_dateutil-2.6.1-py2.7.egg/easybuild/easyconfigs
  71. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
  72. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  73. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  74. == 2018-06-23 16:45:21,442 tools.py:272 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
  75. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  76. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/gvo000/gvo00002/JUBE/easybuild/easyconfigs
  77. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/easybuild/easyconfigs
  78. == 2018-06-23 16:45:21,442 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs
  79. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
  80. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /kyukon/home/gent/vsc400/vsc40023/easybuild/easyconfigs
  81. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
  82. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
  83. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
  84. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
  85. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
  86. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
  87. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs
  88. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
  89. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
  90. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
  91. == 2018-06-23 16:45:21,443 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
  92. == 2018-06-23 16:45:21,445 easyblock.py:649 INFO Found file gshhg-gmt-2.3.7.tar.gz at /apps/gent/source/g/GMT/gshhg-gmt-2.3.7.tar.gz
  93. == 2018-06-23 16:45:21,445 easyblock.py:366 DEBUG File /apps/gent/source/g/GMT/gshhg-gmt-2.3.7.tar.gz found for source gshhg-gmt-2.3.7.tar.gz
  94. == 2018-06-23 16:45:21,445 filetools.py:343 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb
  95. == 2018-06-23 16:45:21,445 tools.py:263 DEBUG Also considering installation prefix /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed...
  96. == 2018-06-23 16:45:21,445 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
  97. == 2018-06-23 16:45:21,445 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-k8v8Xc/files_pr6496/easybuild/easyconfigs
  98. == 2018-06-23 16:45:21,445 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
  99. == 2018-06-23 16:45:21,445 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
  100. == 2018-06-23 16:45:21,445 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/python_dateutil-2.6.1-py2.7.egg/easybuild/easyconfigs
  101. == 2018-06-23 16:45:21,445 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
  102. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  103. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  104. == 2018-06-23 16:45:21,446 tools.py:272 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
  105. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.6.2.dev0-py2.7.egg/easybuild/easyconfigs
  106. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/gvo000/gvo00002/JUBE/easybuild/easyconfigs
  107. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/easybuild/easyconfigs
  108. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs
  109. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
  110. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /kyukon/home/gent/vsc400/vsc40023/easybuild/easyconfigs
  111. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
  112. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
  113. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
  114. == 2018-06-23 16:45:21,446 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
  115. == 2018-06-23 16:45:21,447 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
  116. == 2018-06-23 16:45:21,447 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
  117. == 2018-06-23 16:45:21,447 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs
  118. == 2018-06-23 16:45:21,447 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
  119. == 2018-06-23 16:45:21,447 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
  120. == 2018-06-23 16:45:21,447 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
  121. == 2018-06-23 16:45:21,447 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /kyukon/data/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
  122. == 2018-06-23 16:45:21,448 easyblock.py:649 INFO Found file dcw-gmt-1.1.3.tar.gz at /apps/gent/source/g/GMT/dcw-gmt-1.1.3.tar.gz
  123. == 2018-06-23 16:45:21,448 easyblock.py:366 DEBUG File /apps/gent/source/g/GMT/dcw-gmt-1.1.3.tar.gz found for source dcw-gmt-1.1.3.tar.gz
  124. == 2018-06-23 16:45:21,448 easyblock.py:378 INFO Added sources: [{'path': '/apps/gent/source/g/GMT/gmt-4.5.17-src.tar.bz2', 'cmd': None, 'finalpath': '/tmp/vsc40023/easybuild_build/GMT/4.5.17/foss-2018a', 'name': 'gmt-4.5.17-src.tar.bz2', 'checksum': 'd69c4e2075f16fb7c153ba77429a7b60e45c44583ebefd7aae63ae05439d1d41'}, {'path': '/apps/gent/source/g/GMT/gshhg-gmt-2.3.7.tar.gz', 'cmd': None, 'finalpath': '/tmp/vsc40023/easybuild_build/GMT/4.5.17/foss-2018a', 'name': 'gshhg-gmt-2.3.7.tar.gz', 'checksum': '9bb1a956fca0718c083bef842e625797535a00ce81f175df08b042c2a92cfe7f'}, {'path': '/apps/gent/source/g/GMT/dcw-gmt-1.1.3.tar.gz', 'cmd': None, 'finalpath': '/tmp/vsc40023/easybuild_build/GMT/4.5.17/foss-2018a', 'name': 'dcw-gmt-1.1.3.tar.gz', 'checksum': '1395e772c3f2d2900c78260ad4a9df2fecd9216e362ad141762f7499bfeb4f23'}]
  125. == 2018-06-23 16:45:21,448 easyblock.py:1622 INFO no patches provided
  126. == 2018-06-23 16:45:21,448 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
  127. == 2018-06-23 16:45:21,674 easyblock.py:1632 INFO md5 checksum for /apps/gent/source/g/GMT/gmt-4.5.17-src.tar.bz2: 1d6f9d927e5334e30407171e16d8831f
  128. == 2018-06-23 16:45:21,674 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
  129. == 2018-06-23 16:45:21,789 easyblock.py:1632 INFO sha256 checksum for /apps/gent/source/g/GMT/gmt-4.5.17-src.tar.bz2: d69c4e2075f16fb7c153ba77429a7b60e45c44583ebefd7aae63ae05439d1d41
  130. == 2018-06-23 16:45:21,789 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
  131. == 2018-06-23 16:45:22,019 easyblock.py:1632 INFO md5 checksum for /apps/gent/source/g/GMT/gshhg-gmt-2.3.7.tar.gz: 8ee2653f9daf84d49fefbf990bbfa1e7
  132. == 2018-06-23 16:45:22,019 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
  133. == 2018-06-23 16:45:22,181 easyblock.py:1632 INFO sha256 checksum for /apps/gent/source/g/GMT/gshhg-gmt-2.3.7.tar.gz: 9bb1a956fca0718c083bef842e625797535a00ce81f175df08b042c2a92cfe7f
  134. == 2018-06-23 16:45:22,181 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
  135. == 2018-06-23 16:45:22,375 easyblock.py:1632 INFO md5 checksum for /apps/gent/source/g/GMT/dcw-gmt-1.1.3.tar.gz: 57b9bf8f6c266fbc379ebe75ce78c3d4
  136. == 2018-06-23 16:45:22,375 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
  137. == 2018-06-23 16:45:22,437 easyblock.py:1632 INFO sha256 checksum for /apps/gent/source/g/GMT/dcw-gmt-1.1.3.tar.gz: 1395e772c3f2d2900c78260ad4a9df2fecd9216e362ad141762f7499bfeb4f23
  138. == 2018-06-23 16:45:22,437 easyconfig.py:1685 DEBUG Determining full module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1d0bdd0> (force_visible: False)
  139. == 2018-06-23 16:45:22,437 easyconfig.py:1665 DEBUG No alternative software name specified to determine module name with
  140. == 2018-06-23 16:45:22,437 utilities.py:103 DEBUG Module name GMT/4.5.17-foss-2018a validated
  141. == 2018-06-23 16:45:22,437 easyconfig.py:1692 DEBUG Obtained valid full module name GMT/4.5.17-foss-2018a
  142. == 2018-06-23 16:45:22,437 config.py:486 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules
  143. == 2018-06-23 16:45:22,437 easyblock.py:1665 INFO Checking dirs that need to be created: ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/software/GMT/4.5.17-foss-2018a', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all/GMT', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/geo/GMT']
  144. == 2018-06-23 16:45:22,439 filetools.py:1108 INFO Creating directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/software/GMT/4.5.17-foss-2018a (parents: True, set_gid: False, sticky: False)
  145. == 2018-06-23 16:45:22,440 filetools.py:1136 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all/GMT
  146. == 2018-06-23 16:45:22,441 filetools.py:1136 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/geo/GMT
  147. == 2018-06-23 16:45:22,441 easyblock.py:2524 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
  148. == 2018-06-23 16:45:22,441 build_log.py:233 INFO creating build dir, resetting environment...
  149. == 2018-06-23 16:45:22,441 easyblock.py:2532 INFO Starting ready step
  150. == 2018-06-23 16:45:22,442 templates.py:153 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1d0bdd0>
  151. == 2018-06-23 16:45:22,442 templates.py:177 DEBUG version found in easyconfig is 4.5.17
  152. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: github_account, config: None
  153. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: name, config: GMT
  154. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: version, config: 4.5.17
  155. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: versionsuffix, config:
  156. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: versionprefix, config:
  157. == 2018-06-23 16:45:22,442 templates.py:153 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1d0bdd0>
  158. == 2018-06-23 16:45:22,442 templates.py:177 DEBUG version found in easyconfig is 4.5.17
  159. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: github_account, config: None
  160. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: name, config: GMT
  161. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: version, config: 4.5.17
  162. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: versionsuffix, config:
  163. == 2018-06-23 16:45:22,442 templates.py:221 DEBUG name: versionprefix, config:
  164. == 2018-06-23 16:45:22,443 easyblock.py:2538 INFO Running method check_readiness_step part of step ready
  165. == 2018-06-23 16:45:22,443 easyblock.py:1513 DEBUG Desired parallelism specified via 'parallel' easyconfig parameter: 1
  166. == 2018-06-23 16:45:22,443 easyblock.py:1521 INFO Setting parallelism: 1
  167. == 2018-06-23 16:45:22,443 modules.py:648 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc
  168. == 2018-06-23 16:45:22,443 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
  169. == 2018-06-23 16:45:22,443 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
  170. == 2018-06-23 16:45:22,443 modules.py:659 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /kyukon/home/gent/vsc400/vsc40023
  171. == 2018-06-23 16:45:22,480 modules.py:665 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc";
  172. os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPTcyMDAsWyJjX3Nob3J0VGltZSJdPTAuNDIyMzY2MTQyMjcyOTUsZGVwdGhUPXt9LGZhbWlseT17WyJjbHVzdGVyIl09ImNsdXN0ZXIiLH0sbVQ9e2NsdXN0ZXI9e1siZm4iXT0iL2V0Yy9tb2R1bGVmaWxlcy92c2MvY2x1c3Rlci9za2l0dHkubHVhIixbImZ1bGxOYW1lIl09ImNsdXN0ZXIvc2tpdHR5IixbImxvYWRPcmRlciJdPTEscHJvcFQ9e2xtb2Q9e1sic3RpY2t5Il09MSx9LH0sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iY2x1c3Rlci9za2l0dHkiLH0sfSxtcGF0aEE9eyIvdXNlci9ob21lL2dlbnQvdnNjNDAwL3ZzYzQwMDIzL2ViX3Bo";
  173. os.environ["_ModuleTable002_"] = "YW5weXNjcmF0Y2gvQ083L3NreWxha2UtaWIvbW9kdWxlcy9hbGwiLCIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfQ==";
  174. os.environ["_ModuleTable_Sz_"] = "2";
  175. ; stderr: cluster/skitty
  176.  
  177. == 2018-06-23 16:45:22,481 modules.py:1137 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine
  178. == 2018-06-23 16:45:22,481 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
  179. == 2018-06-23 16:45:22,481 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
  180. == 2018-06-23 16:45:22,481 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
  181. == 2018-06-23 16:45:22,481 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
  182. == 2018-06-23 16:45:22,481 easyblock.py:1526 WARNING Loaded modules detected: ['cluster/skitty']
  183. == 2018-06-23 16:45:22,482 easyconfig.py:612 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.41-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.41-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '8.41', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.2.3-foss-2018a-Python-2.7.14', 'toolchain': {'version': '2018a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.2.3-foss-2018a-Python-2.7.14', 'external_module': False, 'versionsuffix': '-Python-2.7.14', 'version': '2.2.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'FFTW/3.3.7-gompi-2018a', 'toolchain': {'version': '2018a', 'name': 'gompi'}, 'name': 'FFTW', 'dummy': False, 'short_mod_name': 'FFTW/3.3.7-gompi-2018a', 'external_module': False, 'versionsuffix': '', 'version': '3.3.7', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'netCDF/4.6.0-foss-2018a', 'toolchain': {'version': '2018a', 'name': 'foss'}, 'name': 'netCDF', 'dummy': False, 'short_mod_name': 'netCDF/4.6.0-foss-2018a', 'external_module': False, 'versionsuffix': '', 'version': '4.6.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Ghostscript/9.22-GCCcore-6.4.0-cairo-1.14.12', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'Ghostscript', 'dummy': False, 'short_mod_name': 'Ghostscript/9.22-GCCcore-6.4.0-cairo-1.14.12', 'external_module': False, 'versionsuffix': '-cairo-1.14.12', 'version': '9.22', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.58.0-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.58.0-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '7.58.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.11-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': 'zlib/1.2.11-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '1.2.11', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
  184. == 2018-06-23 16:45:22,482 toolchain.py:376 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.41-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.41-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '8.41', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.2.3-foss-2018a-Python-2.7.14', 'toolchain': {'version': '2018a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.2.3-foss-2018a-Python-2.7.14', 'external_module': False, 'versionsuffix': '-Python-2.7.14', 'version': '2.2.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'FFTW/3.3.7-gompi-2018a', 'toolchain': {'version': '2018a', 'name': 'gompi'}, 'name': 'FFTW', 'dummy': False, 'short_mod_name': 'FFTW/3.3.7-gompi-2018a', 'external_module': False, 'versionsuffix': '', 'version': '3.3.7', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'netCDF/4.6.0-foss-2018a', 'toolchain': {'version': '2018a', 'name': 'foss'}, 'name': 'netCDF', 'dummy': False, 'short_mod_name': 'netCDF/4.6.0-foss-2018a', 'external_module': False, 'versionsuffix': '', 'version': '4.6.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Ghostscript/9.22-GCCcore-6.4.0-cairo-1.14.12', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'Ghostscript', 'dummy': False, 'short_mod_name': 'Ghostscript/9.22-GCCcore-6.4.0-cairo-1.14.12', 'external_module': False, 'versionsuffix': '-cairo-1.14.12', 'version': '9.22', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.58.0-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.58.0-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '7.58.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.11-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': 'zlib/1.2.11-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '1.2.11', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
  185. == 2018-06-23 16:45:22,482 toolchain.py:386 DEBUG add_dependencies: MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc
  186. == 2018-06-23 16:45:22,482 modules.py:444 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc', 'lmod', '--show-hidden')': ['ABINIT/8.6.3-intel-2018a', 'ANTLR/2.7.7-foss-2018a-Python-2.7.14', 'ASE/3.16.2-iomkl-2018.02-Python-3.6.4', 'Autoconf/2.69-GCCcore-6.4.0', 'Autoconf/2.69-GCCcore-7.3.0', 'Automake/1.15.1-GCCcore-6.4.0', 'Automake/1.16.1-GCCcore-7.3.0', 'Autotools/20170619-GCCcore-6.4.0', 'Autotools/20180311-GCCcore-7.3.0', 'BamUtil/1.0.14-intel-2018a', 'Bazel/0.10.0-GCCcore-6.4.0', 'Bazel/0.12.0-GCCcore-6.4.0', 'Biopython/1.71-intel-2018a-Python-3.6.4', 'Bison/3.0.4', 'Bison/3.0.4-GCCcore-6.4.0', 'Bison/3.0.4-GCCcore-7.3.0', 'Bison/3.0.4-GCCcore-8.1.0', 'Bison/3.0.5-GCCcore-7.3.0', 'Boost/1.63.0-foss-2018a-Python-2.7.14', 'Boost/1.66.0-foss-2018a', 'Boost/1.66.0-intel-2018a', 'Boost/1.67.0-intel-2018a', 'CGAL/4.11.1-foss-2018a-Python-2.7.14', 'CMake/3.10.2-GCCcore-6.4.0', 'CMake/3.9.1-GCCcore-6.4.0', 'CMake/3.9.5-GCCcore-6.4.0', 'CP2K/5.1-foss-2018a', 'CP2K/5.1-intel-2018a', 'CUnit/2.1-3-GCCcore-6.4.0', 'Canu/1.7-intel-2018a', 'Cython/0.25.2-intel-2018a-Python-3.6.4', 'Cython/0.28.2', 'DBD-mysql/4.046-intel-2018a-Perl-5.26.1', 'Doxygen/1.8.13-GCCcore-6.4.0', 'Doxygen/1.8.14-GCCcore-6.4.0', 'Eigen/3.3.4', 'FANN/2.2.0-GCCcore-6.4.0', 'FANN/2.2.0-intel-2018a', 'FASTX-Toolkit/0.0.14-intel-2018a', 'FFTW/3.3.7-GCC-6.4.0-2.28-serial', 'FFTW/3.3.7-gompi-2018a', 'FFTW/3.3.7-gompi-2018a-test', 'FFTW/3.3.7-intel-2017b', 'FFTW/3.3.7-intel-2018a', 'FFTW/3.3.7-iomkl-2018a', 'FFTW/3.3.8-gompi-2018b', 'GCC/6.4.0-2.28', 'GCC/7.3.0-2.30', 'GCC/8.1.0-2.30', 'GCCcore/6.4.0', 'GCCcore/7.3.0', 'GCCcore/8.1.0', 'GDAL/2.2.2-intel-2017b-Python-2.7.14', 'GDAL/2.2.2-intel-2017b-Python-2.7.14-HDF5-1.8.19', 'GDAL/2.2.3-intel-2018a-Python-3.6.4', 'GDAL/2.2.3-iomkl-2018a-Python-3.6.4', 'GEOS/3.6.2-foss-2018a-Python-2.7.14', 'GEOS/3.6.2-intel-2017b-Python-2.7.14', 'GEOS/3.6.2-intel-2018a-Python-3.6.4', 'GEOS/3.6.2-iomkl-2018a-Python-3.6.4', 'GLib/2.53.5-GCCcore-6.4.0', 'GLib/2.54.3-GCCcore-6.4.0', 'GMP/6.1.2-GCCcore-6.4.0', 'GMP/6.1.2-GCCcore-7.3.0', 'GROMACS/2016.5-foss-2018a', 'GSL/2.4-GCCcore-6.4.0', 'Ghostscript/9.22-GCCcore-6.4.0-cairo-1.14.12', 'Ghostscript/9.22-intel-2017b', 'Guile/1.8.8-GCCcore-6.4.0', 'HDF5/1.10.1-intel-2017b', 'HDF5/1.10.1-intel-2018a', 'HDF5/1.10.1-iomkl-2018a', 'HDF5/1.8.19-intel-2017b', 'HPL/2.2-foss-2018b', 'HPL/2.2-intel-2018.03', 'HPL/2.2-intel-2018b', 'HTSlib/1.8-foss-2018a', 'HTSlib/1.8-intel-2018a', 'ICU/61.1-GCCcore-6.4.0', 'IPy/0.83', 'IPython/5.7.0-foss-2018a-Python-2.7.14', 'JasPer/1.900.1-GCCcore-6.4.0', 'JasPer/2.0.14-GCCcore-6.4.0', 'Java/1.8.0_162', 'LibTIFF/4.0.8-intel-2017b', 'LibTIFF/4.0.9-GCCcore-6.4.0', 'LibTIFF/4.0.9-intel-2017b', 'LibUUID/1.0.3-GCCcore-7.3.0', 'Libint/1.1.6-foss-2018a', 'Libint/1.1.6-intel-2018a', 'M4/1.4.17', 'M4/1.4.18', 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'iccifort/2018.3.222-GCC-7.3.0-2.30', 'ifort/2017.4.196-GCC-6.4.0-2.28', 'ifort/2018.1.163-GCC-6.4.0-2.28', 'ifort/2018.2.199-GCC-6.4.0-2.28', 'ifort/2018.3.222-GCC-7.3.0-2.30', 'iimpi/2017b', 'iimpi/2018.01', 'iimpi/2018.03', 'iimpi/2018a', 'iimpi/2018b', 'imkl/2017.3.196-iimpi-2017b', 'imkl/2018.1.163-iimpi-2018.01', 'imkl/2018.1.163-iimpi-2018a', 'imkl/2018.1.163-iompi-2018a', 'imkl/2018.2.199-iompi-2018.02', 'imkl/2018.3.222-iimpi-2018.03', 'imkl/2018.3.222-iimpi-2018b', 'impi/2017.3.196-iccifort-2017.4.196-GCC-6.4.0-2.28', 'impi/2018.1.163-iccifort-2018.1.163-GCC-6.4.0-2.28', 'impi/2018.3.222-iccifort-2018.3.222-GCC-7.3.0-2.30', 'intel/2017b', 'intel/2018.01', 'intel/2018.03', 'intel/2018a', 'intel/2018b', 'intltool/0.51.0-GCCcore-6.4.0-Perl-5.26.0', 'intltool/0.51.0-GCCcore-6.4.0-Perl-5.26.1', 'intltool/0.51.0-GCCcore-7.3.0-Perl-5.26.2', 'iomkl/2018.02', 'iomkl/2018a', 'iompi/2018.02', 'iompi/2018a', 'jemalloc/5.0.1-GCCcore-6.4.0', 'libGLU/9.0.0-iomkl-2018a', 'libffi/3.2.1-GCCcore-6.4.0', 'libffi/3.2.1-GCCcore-7.3.0', 'libgtextutils/0.7-intel-2018a', 'libjpeg-turbo/1.5.2-GCCcore-6.4.0', 'libjpeg-turbo/1.5.3-GCCcore-6.4.0', 'libmatheval/1.1.11-GCCcore-6.4.0', 'libpng/1.6.32-GCCcore-6.4.0', 'libpng/1.6.34-GCCcore-6.4.0', 'libpng/1.6.34-GCCcore-7.3.0', 'libreadline/7.0-GCCcore-6.4.0', 'libreadline/7.0-GCCcore-7.3.0', 'libsndfile/1.0.28-GCCcore-6.4.0', 'libtool/2.4.6-GCCcore-6.4.0', 'libtool/2.4.6-GCCcore-7.3.0', 'libunistring/0.9.7-GCCcore-6.4.0', 'libxc/3.0.1-foss-2018a', 'libxc/3.0.1-intel-2018a', 'libxml2/2.9.4-GCCcore-6.4.0', 'libxml2/2.9.7-GCCcore-6.4.0', 'libxml2/2.9.8-GCCcore-7.3.0', 'libxslt/1.1.32-GCCcore-6.4.0', 'libxsmm/1.8.3-foss-2018a', 'libxsmm/1.8.3-intel-2018a', 'libyaml/0.1.7-GCCcore-6.4.0', 'lxml/4.2.0-intel-2018a-Python-2.7.14', 'matplotlib/2.1.2-intel-2018a-Python-2.7.14', 'matplotlib/2.1.2-intel-2018a-Python-3.6.4', 'matplotlib/2.1.2-iomkl-2018.02-Python-3.6.4', 'mympingpong/0.8.0-foss-2018a-Python-2.7.14', 'mympingpong/0.8.0-intel-2018a-Python-2.7.14', 'nanopolish/0.9.2-intel-2018a', 'ncurses/6.0', 'ncurses/6.0-GCCcore-6.4.0', 'ncurses/6.1-GCCcore-7.3.0', 'netCDF-Fortran/4.4.4-intel-2018a', 'netCDF/4.4.1.1-intel-2017b-HDF5-1.8.19', 'netCDF/4.5.0-intel-2017b', 'netCDF/4.6.0-intel-2018a', 'netCDF/4.6.0-iomkl-2018a', 'nettle/3.4-iomkl-2018a', 'numactl/2.0.11-GCCcore-6.4.0', 'numactl/2.0.11-GCCcore-7.3.0', 'phonopy/1.13.0.64-intel-2018a-Python-2.7.14', 'pixman/0.34.0-GCCcore-6.4.0', 'pkg-config/0.29.2-GCCcore-6.4.0', 'pkg-config/0.29.2-GCCcore-7.3.0', 'pkgconfig/1.3.1-intel-2018a-Python-2.7.14', 'pkgconfig/1.3.1-intel-2018a-Python-3.6.4', 'poretools/0.6.0-intel-2018a-Python-2.7.14', 'pyslurm/17.11.0.7', 'scikit-learn/0.19.1-intel-2018a-Python-3.6.4', 'setuptools/1.4.2', 'util-linux/2.31-GCCcore-6.4.0', 'util-linux/2.31.1-GCCcore-6.4.0', 'vsc-base/2.8.0', 'vsc-base/2.8.0dev', 'vsc-install/0.11.1', 'vsc-mympirun/4.1.1dev', 'vsc-mympirun/4.1.2dev', 'vsc-mympirun/4.1.4', 'vsc-mympirun/4.1.4dev', 'wheel/0.30.0-intel-2017b-Python-3.6.3', 'wheel/0.31.0-foss-2018a-Python-3.6.4', 'worker/1.6.8-intel-2018a', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-6.4.0', 'zlib/1.2.11-GCCcore-7.3.0', 'zlib/1.2.11-GCCcore-8.1.0', 'zlib/1.2.8']
  187. == 2018-06-23 16:45:22,483 modules.py:648 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc
  188. == 2018-06-23 16:45:22,483 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
  189. == 2018-06-23 16:45:22,483 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
  190. == 2018-06-23 16:45:22,483 modules.py:659 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show GDAL/2.2.3-foss-2018a-Python-2.7.14' from /kyukon/home/gent/vsc400/vsc40023
  191. == 2018-06-23 16:45:22,575 modules.py:665 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show GDAL/2.2.3-foss-2018a-Python-2.7.14': stdout: os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc";
  192. os.environ["_ModuleTable001_"] = "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";
  193. os.environ["_ModuleTable002_"] = "YW5weXNjcmF0Y2gvQ083L3NreWxha2UtaWIvbW9kdWxlcy9hbGwiLCIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfQ==";
  194. os.environ["_ModuleTable_Sz_"] = "2";
  195. ; stderr:
  196. == 2018-06-23 16:45:22,576 modules.py:561 DEBUG Cached result for 'module show GDAL/2.2.3-foss-2018a-Python-2.7.14' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'GDAL/2.2.3-foss-2018a-Python-2.7.14')': os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc";
  197. os.environ["_ModuleTable001_"] = "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";
  198. os.environ["_ModuleTable002_"] = "YW5weXNjcmF0Y2gvQ083L3NreWxha2UtaWIvbW9kdWxlcy9hbGwiLCIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfQ==";
  199. os.environ["_ModuleTable_Sz_"] = "2";
  200.  
  201. == 2018-06-23 16:45:22,576 modules.py:557 DEBUG Found cached result for 'module show netCDF/4.6.0-foss-2018a' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'netCDF/4.6.0-foss-2018a')': os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc";
  202. os.environ["_ModuleTable001_"] = "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";
  203. os.environ["_ModuleTable002_"] = "YW5weXNjcmF0Y2gvQ083L3NreWxha2UtaWIvbW9kdWxlcy9hbGwiLCIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfQ==";
  204. os.environ["_ModuleTable_Sz_"] = "2";
  205.  
  206. == 2018-06-23 16:45:22,577 build_log.py:158 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Missing modules for one or more dependencies: GDAL/2.2.3-foss-2018a-Python-2.7.14, netCDF/4.6.0-foss-2018a (at easybuild/tools/toolchain/toolchain.py:401 in add_dependencies)
  207. == 2018-06-23 16:45:22,577 easyblock.py:2780 WARNING build failed (first 300 chars): Missing modules for one or more dependencies: GDAL/2.2.3-foss-2018a-Python-2.7.14, netCDF/4.6.0-foss-2018a
  208. == 2018-06-23 16:45:22,577 easyblock.py:281 INFO Closing log for application name GMT version 4.5.17
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