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- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- indivname: Indian.ind
- snpname: Indian.snp
- genotypename: Indian.geno
- popleft: left.txt
- popright: right.txt
- inbreed: NO
- allsnps: YES
- details: YES
- ## qpAdm version: 1201
- seed: -2089145294
- read 1073741824 bytes
- read 1493178743 bytes
- packed geno read OK
- end of inpack
- left pops:
- Kumaoni_Rajput
- Onge.SG
- Indus_PeripheryB
- Russia_Srubnaya_Alakul.SG
- Nepal_Chokhopani_2800BP.SG
- right pops:
- Mbuti.DG
- EHG
- CHG
- WSHG
- Turkey_N
- Levant_PPN
- China_Paleolithic
- Iran_GanjDareh_N
- Mongolia_North_N
- Serbia_IronGates_Mesolithic
- 0 Kumaoni_Rajput 10
- 1 Onge.SG 6
- 2 Indus_PeripheryB 3
- 3 Russia_Srubnaya_Alakul.SG 7
- 4 Nepal_Chokhopani_2800BP.SG 1
- 5 Mbuti.DG 10
- 6 EHG 16
- 7 CHG 2
- 8 WSHG 2
- 9 Turkey_N 24
- 10 Levant_PPN 10
- 11 China_Paleolithic 2
- 12 Iran_GanjDareh_N 8
- 13 Mongolia_North_N 5
- 14 Serbia_IronGates_Mesolithic 32
- jackknife block size: 0.050
- snps: 1150571 indivs: 138
- number of blocks for block jackknife: 714
- ## ncols: 1150571
- coverage: Kumaoni_Rajput 562052
- coverage: Onge.SG 1143397
- coverage: Indus_PeripheryB 802231
- coverage: Russia_Srubnaya_Alakul.SG 1148418
- coverage: Nepal_Chokhopani_2800BP.SG 1131012
- coverage: Mbuti.DG 1149658
- coverage: EHG 1113964
- coverage: CHG 1147700
- coverage: WSHG 856571
- coverage: Turkey_N 1138912
- coverage: Levant_PPN 660682
- coverage: China_Paleolithic 1008603
- coverage: Iran_GanjDareh_N 1057033
- coverage: Mongolia_North_N 1057835
- coverage: Serbia_IronGates_Mesolithic 1138678
- Effective number of blocks: 615.326
- numsnps used: 1150571
- codimension 1
- f4info:
- f4rank: 3 dof: 6 chisq: 16.011 tail: 0.0136933279 dofdiff: 8 chisqdiff: -16.011 taildiff: 1
- B:
- scale 1.000 1.000 1.000
- EHG 1.191 0.569 -0.609
- CHG 0.998 -0.436 0.674
- WSHG 0.759 0.570 0.342
- Turkey_N 1.143 0.195 -0.294
- Levant_PPN 0.857 0.007 0.142
- China_Paleolithic -0.755 0.796 -0.177
- Iran_GanjDareh_N 0.768 -1.085 1.985
- Mongolia_North_N -1.045 2.372 1.036
- Serbia_IronGates_Mesolithic 1.310 0.827 -1.705
- A:
- scale 320.107 900.857 1521.247
- Onge.SG -1.021 -0.781 -1.662
- Indus_PeripheryB 0.227 -0.986 0.444
- Russia_Srubnaya_Alakul.SG 1.425 0.426 -0.898
- Nepal_Chokhopani_2800BP.SG -0.935 1.495 0.484
- full rank
- f4info:
- f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 6 chisqdiff: 16.011 taildiff: 0.0136933279
- B:
- scale 322.013 668.237 220.829 271.502
- EHG -1.186 -0.112 1.307 -0.754
- CHG -1.225 0.563 0.795 -1.056
- WSHG -1.057 -0.101 0.760 -0.326
- Turkey_N -1.155 0.283 1.178 -0.847
- Levant_PPN -0.924 0.532 0.839 -0.612
- China_Paleolithic 0.576 -1.158 -0.653 0.890
- Iran_GanjDareh_N -1.204 1.531 0.374 -0.918
- Mongolia_North_N 0.007 -2.115 -0.927 1.956
- Serbia_IronGates_Mesolithic -1.002 -0.372 1.601 -0.811
- A:
- scale 2.000 2.000 2.000 2.000
- Onge.SG 2.000 0.000 0.000 0.000
- Indus_PeripheryB 0.000 2.000 0.000 0.000
- Russia_Srubnaya_Alakul.SG 0.000 0.000 2.000 0.000
- Nepal_Chokhopani_2800BP.SG 0.000 0.000 0.000 2.000
- best coefficients: 0.097 0.433 0.187 0.283
- Jackknife mean: 0.097778445 0.432672918 0.186734393 0.282814244
- std. errors: 0.032 0.022 0.013 0.022
- error covariance (* 1,000,000)
- 1056 -399 -25 -631
- -399 498 -203 104
- -25 -203 172 56
- -631 104 56 472
- summ: Kumaoni_Rajput 4 0.013693 0.098 0.433 0.187 0.283 1056 -399 -25 -631 498 ...
- -203 104 172 56 472
- fixed pat wt dof chisq tail prob
- 0000 0 6 16.011 0.0136933 0.097 0.433 0.187 0.283
- 0001 1 7 168.493 0 0.483 0.396 0.121 0.000
- 0010 1 7 155.378 3.00886e-30 -0.094 0.749 0.000 0.345 infeasible
- 0100 1 7 311.963 0 1.456 0.000 0.113 -0.569 infeasible
- 1000 1 7 23.796 0.00123729 0.000 0.472 0.187 0.341
- 0011 2 8 218.604 0 0.436 0.564 0.000 0.000
- 0101 2 8 331.833 0 0.704 0.000 0.296 0.000
- 0110 2 8 309.810 0 1.884 0.000 0.000 -0.884 infeasible
- 1001 2 8 495.792 0 0.000 1.158 -0.158 0.000 infeasible
- 1010 2 8 159.494 2.041e-30 0.000 0.714 0.000 0.286
- 1100 2 8 429.839 0 0.000 0.000 0.441 0.559
- 0111 3 9 761.936 0 1.000 0.000 0.000 0.000
- 1011 3 9 549.217 0 0.000 1.000 0.000 0.000
- 1101 3 9 3710.600 0 0.000 0.000 1.000 0.000
- 1110 3 9 1427.042 0 0.000 0.000 0.000 1.000
- best pat: 0000 0.0136933 - -
- best pat: 1000 0.00123729 chi(nested): 7.785 p-value for nested model: 0.00526895
- best pat: 1010 2.041e-30 chi(nested): 135.697 p-value for nested model: 2.32367e-31
- best pat: 1011 1.63871e-112 chi(nested): 389.723 p-value for nested model: 9.50903e-87
- coeffs: 0.097 0.433 0.187 0.283
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Onge.SG EHG -0.003684 -17.054675
- details: Indus_PeripheryB EHG -0.000168 -0.744967
- details: Russia_Srubnaya_Alakul.SG EHG 0.005918 33.603134
- details: Nepal_Chokhopani_2800BP.SG EHG -0.002777 -9.889855
- dscore: EHG f4: -0.000113 Z: -0.816090
- details: Onge.SG CHG -0.003804 -15.217076
- details: Indus_PeripheryB CHG 0.000843 3.398616
- details: Russia_Srubnaya_Alakul.SG CHG 0.003601 18.014142
- details: Nepal_Chokhopani_2800BP.SG CHG -0.003888 -12.823905
- dscore: CHG f4: -0.000434 Z: -2.915805
- details: Onge.SG WSHG -0.003282 -13.061275
- details: Indus_PeripheryB WSHG -0.000151 -0.563937
- details: Russia_Srubnaya_Alakul.SG WSHG 0.003442 16.804477
- details: Nepal_Chokhopani_2800BP.SG WSHG -0.001202 -3.741474
- dscore: WSHG f4: -0.000083 Z: -0.499056
- details: Onge.SG Turkey_N -0.003587 -17.871009
- details: Indus_PeripheryB Turkey_N 0.000423 2.125911
- details: Russia_Srubnaya_Alakul.SG Turkey_N 0.005334 31.591083
- details: Nepal_Chokhopani_2800BP.SG Turkey_N -0.003121 -12.221197
- dscore: Turkey_N f4: -0.000054 Z: -0.429663
- details: Onge.SG Levant_PPN -0.002870 -14.094743
- details: Indus_PeripheryB Levant_PPN 0.000796 3.305533
- details: Russia_Srubnaya_Alakul.SG Levant_PPN 0.003801 21.301312
- details: Nepal_Chokhopani_2800BP.SG Levant_PPN -0.002254 -8.219270
- dscore: Levant_PPN f4: 0.000137 Z: 0.943956
- details: Onge.SG China_Paleolithic 0.001788 6.872411
- details: Indus_PeripheryB China_Paleolithic -0.001733 -7.290696
- details: Russia_Srubnaya_Alakul.SG China_Paleolithic -0.002959 -15.400161
- details: Nepal_Chokhopani_2800BP.SG China_Paleolithic 0.003277 9.935735
- dscore: China_Paleolithic f4: -0.000201 Z: -1.304481
- details: Onge.SG Iran_GanjDareh_N -0.003740 -17.681737
- details: Indus_PeripheryB Iran_GanjDareh_N 0.002291 10.900972
- details: Russia_Srubnaya_Alakul.SG Iran_GanjDareh_N 0.001693 10.206371
- details: Nepal_Chokhopani_2800BP.SG Iran_GanjDareh_N -0.003382 -12.343590
- dscore: Iran_GanjDareh_N f4: -0.000013 Z: -0.098653
- details: Onge.SG Mongolia_North_N 0.000022 0.092715
- details: Indus_PeripheryB Mongolia_North_N -0.003165 -14.088739
- details: Russia_Srubnaya_Alakul.SG Mongolia_North_N -0.004196 -22.394396
- details: Nepal_Chokhopani_2800BP.SG Mongolia_North_N 0.007204 23.690896
- dscore: Mongolia_North_N f4: -0.000112 Z: -0.769813
- details: Onge.SG Serbia_IronGates_Mesolithic -0.003113 -13.722366
- details: Indus_PeripheryB Serbia_IronGates_Mesolithic -0.000557 -2.568498
- details: Russia_Srubnaya_Alakul.SG Serbia_IronGates_Mesolithic 0.007252 38.632438
- details: Nepal_Chokhopani_2800BP.SG Serbia_IronGates_Mesolithic -0.002987 -10.948829
- dscore: Serbia_IronGates_Mesolithic f4: -0.000036 Z: -0.273329
- gendstat: Mbuti.DG EHG -0.816
- gendstat: Mbuti.DG CHG -2.916
- gendstat: Mbuti.DG WSHG -0.499
- gendstat: Mbuti.DG Turkey_N -0.430
- gendstat: Mbuti.DG Levant_PPN 0.944
- gendstat: Mbuti.DG China_Paleolithic -1.304
- gendstat: Mbuti.DG Iran_GanjDareh_N -0.099
- gendstat: Mbuti.DG Mongolia_North_N -0.770
- gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.273
- gendstat: EHG CHG -2.187
- gendstat: EHG WSHG 0.223
- gendstat: EHG Turkey_N 0.523
- gendstat: EHG Levant_PPN 1.646
- gendstat: EHG China_Paleolithic -0.554
- gendstat: EHG Iran_GanjDareh_N 0.748
- gendstat: EHG Mongolia_North_N 0.004
- gendstat: EHG Serbia_IronGates_Mesolithic 0.776
- gendstat: CHG WSHG 1.962
- gendstat: CHG Turkey_N 2.799
- gendstat: CHG Levant_PPN 3.418
- gendstat: CHG China_Paleolithic 1.263
- gendstat: CHG Iran_GanjDareh_N 2.935
- gendstat: CHG Mongolia_North_N 1.883
- gendstat: CHG Serbia_IronGates_Mesolithic 2.718
- gendstat: WSHG Turkey_N 0.182
- gendstat: WSHG Levant_PPN 1.200
- gendstat: WSHG China_Paleolithic -0.653
- gendstat: WSHG Iran_GanjDareh_N 0.414
- gendstat: WSHG Mongolia_North_N -0.170
- gendstat: WSHG Serbia_IronGates_Mesolithic 0.311
- gendstat: Turkey_N Levant_PPN 1.613
- gendstat: Turkey_N China_Paleolithic -0.922
- gendstat: Turkey_N Iran_GanjDareh_N 0.359
- gendstat: Turkey_N Mongolia_North_N -0.390
- gendstat: Turkey_N Serbia_IronGates_Mesolithic 0.183
- gendstat: Levant_PPN China_Paleolithic -1.834
- gendstat: Levant_PPN Iran_GanjDareh_N -0.978
- gendstat: Levant_PPN Mongolia_North_N -1.388
- gendstat: Levant_PPN Serbia_IronGates_Mesolithic -1.232
- gendstat: China_Paleolithic Iran_GanjDareh_N 1.118
- gendstat: China_Paleolithic Mongolia_North_N 0.577
- gendstat: China_Paleolithic Serbia_IronGates_Mesolithic 1.030
- gendstat: Iran_GanjDareh_N Mongolia_North_N -0.616
- gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.179
- gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic 0.487
- ##end of qpAdm: 38.124 seconds cpu 1279.787 Mbytes in use
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