thorpedosg

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Jul 24th, 2018
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  1. basic_model = pm.Model()
  2. with basic_model:
  3.  
  4. # Priors for unknown model parameters
  5. a = pm.Normal('a', mu=10, sd=10, shape=4)
  6. b = pm.Normal('b', mu=10, sd=10, shape=4)
  7. c = pm.Normal('c', mu=0, sd=10)
  8. sigma = pm.HalfNormal('sigma', sd=1)
  9.  
  10. alpha = np.tile(a, (4, 1)).T
  11. beta = np.tile(b, (4, 1))
  12. offset = np.tile(c, (4, 4))
  13.  
  14. # Expected values of outcome
  15. mu = sigmoid(alpha, beta, offset) # 4x4 matrix here
  16.  
  17. # Likelihood (sampling distribution) of observations
  18. # (data also 4x4 matrix)
  19. Y_obs = pm.Normal('Y_obs', mu=mu, sd=sigma, observed=data) # ERROR!
  20.  
  21. with basic_model:
  22. # draw 500 posterior samples
  23. trace = pm.sample(500)
  24.  
  25. alpha = pm.Normal('alpha', mu=0, sd=10)
  26. beta = pm.Normal('beta', mu=0, sd=10, shape=2)
  27. sigma = pm.HalfNormal('sigma', sd=1)
  28. mu = alpha + beta[0] * X1 + beta[1] * X2 # mu = Elemwise{add,no_inplace}.0
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