Model: branch

Step 0:
Git clone git@github.com:rabramoff/ACME.git
Git checkout rzacplsumms
git submodule update --init


Step 1: create domain file and surface dataset
module load matlab

CLM45SparseGridDriver('US-Blo/US-Blo_grid.cfg')



/global/u1/j/jinyun/matlab-script-for-clm-sparse-grid/single_point_scripts/US-Blo

domain_US-Blo_grid_c181114.nc
surfdata_US-Blo_grid_c181114.nc



Step 2:
/global/u1/j/jinyun/rose_summf/ACME/cime/scripts/create_newcase -mach edison -project acme -compiler intel --res f19_g16 --compset ICB1850CNPECACNTBC --case /global/u1/j/jinyun/elmsim_edison/rose.summ.edison.`date +"%Y%m%d"`



Forcing data

cat <<EOF > ./user_nl_clm
reaction_method='summs'
nu_com='ECA'
paramfile = '/global/u1/j/jinyun/elm_paramf/elm_params.c1801112.nc'
fsurdat = '/global/u1/j/jinyun/matlab-script-for-clm-sparse-grid/single_point_scripts/US-Blo/surfdata_US-Blo_grid_c181114.nc'
finidat=''
use_dynroot = .false.
hist_empty_htapes = .true.
hist_fincl1 = 'CO2x_TRACER_CONC_BULK','CH4_TRACER_CONC_BULK','CWDC_TRACER_CONC_BULK','ENZC_TRACER_CONC_BULK','ENZC_TRACER_CONC_SOLID_EQUIL','F_CO2_SOIL','F_CO2_SOIL_vr','FWDC_TRACER_CONC_BULK','GPP','H2OSOI','HR', 'HR_vr', 'LAISHA', 'LAISUN','LIT1C_TRACER_CONC_BULK','LIT2C_TRACER_CONC_BULK','LIT3C_TRACER_CONC_BULK','LWDC_TRACER_CONC_BULK','MICC_TRACER_CONC_BULK','MONOC_TRACER_CONC_BULK','MONOC_TRACER_CONC_SOLID_EQUIL','NH3x_TRACER_CONC_BULK','NO3x_TRACER_CONC_BULK','NPP','O2_TRACER_CONC_BULK','POLYC_TRACER_CONC_BULK','RESC_TRACER_CONC_BULK','SOILC','SOILC_HR','SOILPSI','SOM_C_LEACHED','TOTABGC','TOTABGC','TOTECOSYSC','TOTLITC','TOTLITC_1m','TOTSOMC','TOTSOMC_1m','TOTVEGC','TSOI_10CM','CO2x_FLX_SURFEMI','CO2x_FLX_DIF','CO2x_FLX_EBU','CO2x_FLX_ARCHM'
hist_avgflag_pertape = 'A','I'
hist_mfilt = 10
hist_nhtfrq = -8760
suplphos='ALL'
suplnitro='ALL'
stream_fldfilename_pdep='/global/project/projectdirs/acme/jinyun/surf_data/pdep_1850-2013_c20180125.nc'
stream_year_first_pdep = 1850
stream_year_last_pdep = 1850
use_warm = .false.
metdata_type = 'cru'
metdata_bypass = '/global/project/projectdirs/acme/inputdata/atm/datm7/atm_forcing.datm7.cruncep_qianFill.0.5d.V7.c160715/cpl_bypass_full'
co2_file = '/project/projectdirs/acme/inputdata/atm/datm7/CO2/fco2_datm_1765-2007_c100614.nc'
aero_file = '/project/projectdirs/acme/inputdata/atm/cam/chem/trop_mozart_aero/aero/aerosoldep_monthly_1849-2006_1.9x2.5_c090803.nc'
EOF

Change cray-mpich/7.6.0 to cray-mpich/7.7.0 in file  env_mach_specific.xml
<env name="HDF5_USE_FILE_LOCKING">FALSE</env>


setenv NPROCS 1
setenv NTHRDS 1
./xmlchange -file env_mach_pes.xml -id NTASKS_ATM -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTASKS_CPL -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTASKS_LND -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTASKS_ICE -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTASKS_OCN -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTASKS_GLC -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTASKS_ROF -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTASKS_WAV -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTASKS_ESP -val ${NPROCS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_ATM -val ${NTHRDS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_CPL -val ${NTHRDS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_LND -val ${NTHRDS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_ICE -val ${NTHRDS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_OCN -val ${NTHRDS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_GLC -val ${NTHRDS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_ROF -val ${NTHRDS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_WAV -val ${NTHRDS}
./xmlchange -file env_mach_pes.xml -id NTHRDS_ESP -val ${NTHRDS}



./xmlchange ATM_DOMAIN_FILE="domain_US-Blo_grid_c181114.nc"
./xmlchange LND_DOMAIN_FILE="domain_US-Blo_grid_c181114.nc"
./xmlchange LND_DOMAIN_PATH="/global/u1/j/jinyun/matlab-script-for-clm-sparse-grid/single_point_scripts/US-Blo"
./xmlchange ATM_DOMAIN_PATH="/global/u1/j/jinyun/matlab-script-for-clm-sparse-grid/single_point_scripts/US-Blo"

./xmlchange MOSART_MODE=NULL

./xmlchange JOB_WALLCLOCK_TIME="24:00:00"
./xmlchange JOB_QUEUE="regular"

./xmlchange STOP_N=2500,REST_OPTION=nyears,REST_N=1,STOP_OPTION=nyears

./case_setup
sed -i '8iCPPDEFS+= -DCPL_BYPASS' Macros.make

#SBATCH --mail-user=jinyuntang@lbl.gov
#SBATCH --mail-type=all