API tools faq
paste
Advertisement
RG701

Untitled

RG701
Jun 19th, 2022
68
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 11.27 KB | None | 0 0
raw download clone embed print report
  1. popleft: pleftA.txt
  2. popright: pRightC.tx
  3. fstatsoutname: fstats.tx
  4. allsnps: YES
  5. ## qpAdm version: 1201
  6. seed: -1850907926
  7. read 1073741824 bytes
  8. read 2147483648 bytes
  9. read 3213231878 bytes
  10. packed geno read OK
  11. end of inpack
  12.  
  13. left pops:
  14. Turkey_N
  15. Pinarbasi
  16. Satsurblia_HG
  17. Jordan_PPNB
  18.  
  19. right pops:
  20. Cameroon_SMA.DG
  21. Morocco_Iberomaurusian
  22. MA1
  23. Brazil_LapaDoSanto_9600BP
  24. Iran_GanjDareh_N
  25. Kostenki14a
  26. Tianyuan
  27. WSHG1
  28. Tagliente_LPaleolithic
  29. Mongolia_North_N
  30. Russia_HG_Karelia
  31.  
  32. 0 Turkey_N 16
  33. 1 Pinarbasi 1
  34. 2 Satsurblia_HG 1
  35. 3 Jordan_PPNB 3
  36. 4 Cameroon_SMA.DG 1
  37. 5 Morocco_Iberomaurusian 6
  38. 6 MA1 1
  39. 7 Brazil_LapaDoSanto_9600BP 4
  40. 8 Iran_GanjDareh_N 8
  41. 9 Kostenki14a 1
  42. 10 Tianyuan 1
  43. 11 WSHG1 1
  44. 12 Tagliente_LPaleolithic 1
  45. 13 Mongolia_North_N 5
  46. 14 Russia_HG_Karelia 2
  47. jackknife block size: 0.050
  48. snps: 1150172 indivs: 52
  49. number of blocks for block jackknife: 714
  50. ## ncols: 1150172
  51. coverage: Turkey_N 1131246
  52. coverage: Pinarbasi 848431
  53. coverage: Satsurblia_HG 801311
  54. coverage: Jordan_PPNB 258760
  55. coverage: Cameroon_SMA.DG 1140138
  56. coverage: Morocco_Iberomaurusian 1101342
  57. coverage: MA1 805960
  58. coverage: Brazil_LapaDoSanto_9600BP 883139
  59. coverage: Iran_GanjDareh_N 1057358
  60. coverage: Kostenki14a 1068326
  61. coverage: Tianyuan 885079
  62. coverage: WSHG1 805417
  63. coverage: Tagliente_LPaleolithic 186096
  64. coverage: Mongolia_North_N 1057834
  65. coverage: Russia_HG_Karelia 1010733
  66. Effective number of blocks: 614.917
  67. numsnps used: 1150172
  68. codimension 1
  69. f4info:
  70. f4rank: 2 dof: 8 chisq: 13.340 tail: 0.10066741 dofdiff: 10 chisqdiff: -13.340 taildiff: 1
  71. B:
  72. scale 1.000 1.000
  73. Morocco_Iberomaurusian 2.121 -1.766
  74. MA1 -0.038 1.231
  75. Brazil_LapaDoSanto_9600BP 0.281 0.929
  76. Iran_GanjDareh_N -1.391 0.608
  77. Kostenki14a 1.376 0.854
  78. Tianyuan 0.373 0.309
  79. WSHG1 0.100 1.006
  80. Tagliente_LPaleolithic 0.673 0.246
  81. Mongolia_North_N 0.452 0.737
  82. Russia_HG_Karelia 0.887 1.302
  83. A:
  84. scale 1184.246 2186.103
  85. Pinarbasi 0.707 1.395
  86. Satsurblia_HG -1.580 0.457
  87. Jordan_PPNB -0.051 -0.920
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 13.340 taildiff: 0.10066741
  93. B:
  94. scale 1762.705 676.353 1725.676
  95. Morocco_Iberomaurusian -0.575 -2.346 0.742
  96. MA1 0.906 0.140 -0.986
  97. Brazil_LapaDoSanto_9600BP 0.242 -0.360 -1.227
  98. Iran_GanjDareh_N -1.932 1.078 -0.881
  99. Kostenki14a 1.686 -1.299 -0.934
  100. Tianyuan 0.031 -0.423 -0.597
  101. WSHG1 0.133 -0.114 -1.231
  102. Tagliente_LPaleolithic 0.604 -0.657 -0.459
  103. Mongolia_North_N 0.678 -0.429 -0.892
  104. Russia_HG_Karelia 1.171 -0.830 -1.564
  105. A:
  106. scale 1.732 1.732 1.732
  107. Pinarbasi 1.732 0.000 0.000
  108. Satsurblia_HG 0.000 1.732 0.000
  109. Jordan_PPNB 0.000 0.000 1.732
  110.  
  111.  
  112. best coefficients: 0.322 0.126 0.551
  113. Jackknife mean: 0.320027746 0.126290608 0.553681646
  114. std. errors: 0.063 0.026 0.071
  115.  
  116. error covariance (* 1,000,000)
  117. 3994 196 -4190
  118. 196 702 -898
  119. -4190 -898 5088
  120.  
  121.  
  122. summ: Turkey_N 3 0.100667 0.320 0.126 0.554 3994 196 -4190 702 -898 ...
  123. 5088
  124.  
  125. fixed pat wt dof chisq tail prob
  126. 000 0 8 13.340 0.100667 0.322 0.126 0.551
  127. 001 1 9 38.923 1.18952e-05 0.806 0.194 0.000
  128. 010 1 9 36.209 3.63955e-05 0.393 0.000 0.607
  129. 100 1 9 48.090 2.45729e-07 0.000 0.107 0.893
  130. 011 2 10 52.051 1.11635e-07 1.000 0.000 0.000
  131. 101 2 10 259.340 0 0.000 1.000 0.000
  132. 110 2 10 62.149 1.41767e-09 0.000 0.000 1.000
  133. best pat: 000 0.100667 - -
  134. best pat: 010 3.63955e-05 chi(nested): 22.869 p-value for nested model: 1.73421e-06
  135. best pat: 011 1.11635e-07 chi(nested): 15.842 p-value for nested model: 6.885e-05
  136.  
  137. coeffs: 0.322 0.126 0.551
  138.  
  139. ## dscore:: f_4(Base, Fit, Rbase, right2)
  140. ## genstat:: f_4(Base, Fit, right1, right2)
  141.  
  142. details: Pinarbasi Morocco_Iberomaurusian -0.000326 -1.075589
  143. details: Satsurblia_HG Morocco_Iberomaurusian -0.003469 -10.386619
  144. details: Jordan_PPNB Morocco_Iberomaurusian 0.000430 2.657430
  145. dscore: Morocco_Iberomaurusian f4: -0.000307 Z: -2.091472
  146.  
  147. details: Pinarbasi MA1 0.000514 1.318369
  148. details: Satsurblia_HG MA1 0.000207 0.518491
  149. details: Jordan_PPNB MA1 -0.000571 -2.759143
  150. dscore: MA1 f4: -0.000123 Z: -0.648053
  151.  
  152. details: Pinarbasi Brazil_LapaDoSanto_9600BP 0.000137 0.386821
  153. details: Satsurblia_HG Brazil_LapaDoSanto_9600BP -0.000532 -1.603791
  154. details: Jordan_PPNB Brazil_LapaDoSanto_9600BP -0.000711 -3.699870
  155. dscore: Brazil_LapaDoSanto_9600BP f4: -0.000415 Z: -2.399864
  156.  
  157. details: Pinarbasi Iran_GanjDareh_N -0.001096 -3.485511
  158. details: Satsurblia_HG Iran_GanjDareh_N 0.001594 4.660137
  159. details: Jordan_PPNB Iran_GanjDareh_N -0.000510 -3.060468
  160. dscore: Iran_GanjDareh_N f4: -0.000433 Z: -2.754499
  161.  
  162. details: Pinarbasi Kostenki14a 0.000957 2.251455
  163. details: Satsurblia_HG Kostenki14a -0.001921 -4.538124
  164. details: Jordan_PPNB Kostenki14a -0.000541 -2.996169
  165. dscore: Kostenki14a f4: -0.000233 Z: -1.250081
  166.  
  167. details: Pinarbasi Tianyuan 0.000017 0.043803
  168. details: Satsurblia_HG Tianyuan -0.000625 -1.648361
  169. details: Jordan_PPNB Tianyuan -0.000346 -1.729139
  170. dscore: Tianyuan f4: -0.000264 Z: -1.456559
  171.  
  172. details: Pinarbasi WSHG1 0.000075 0.184814
  173. details: Satsurblia_HG WSHG1 -0.000168 -0.439160
  174. details: Jordan_PPNB WSHG1 -0.000713 -3.257617
  175. dscore: WSHG1 f4: -0.000390 Z: -2.010244
  176.  
  177. details: Pinarbasi Tagliente_LPaleolithic 0.000343 1.388131
  178. details: Satsurblia_HG Tagliente_LPaleolithic -0.000971 -3.828861
  179. details: Jordan_PPNB Tagliente_LPaleolithic -0.000266 -1.199894
  180. dscore: Tagliente_LPaleolithic f4: -0.000159 Z: -1.025564
  181.  
  182. details: Pinarbasi Mongolia_North_N 0.000384 1.190625
  183. details: Satsurblia_HG Mongolia_North_N -0.000635 -1.789727
  184. details: Jordan_PPNB Mongolia_North_N -0.000517 -2.839081
  185. dscore: Mongolia_North_N f4: -0.000241 Z: -1.501385
  186.  
  187. details: Pinarbasi Russia_HG_Karelia 0.000664 1.697407
  188. details: Satsurblia_HG Russia_HG_Karelia -0.001227 -3.182739
  189. details: Jordan_PPNB Russia_HG_Karelia -0.000906 -4.742447
  190. dscore: Russia_HG_Karelia f4: -0.000441 Z: -2.466410
  191.  
  192. gendstat: Cameroon_SMA.DG Morocco_Iberomaurusian -2.091
  193. gendstat: Cameroon_SMA.DG MA1 -0.648
  194. gendstat: Cameroon_SMA.DG Brazil_LapaDoSanto_9600BP -2.400
  195. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -2.754
  196. gendstat: Cameroon_SMA.DG Kostenki14a -1.250
  197. gendstat: Cameroon_SMA.DG Tianyuan -1.457
  198. gendstat: Cameroon_SMA.DG WSHG1 -2.010
  199. gendstat: Cameroon_SMA.DG Tagliente_LPaleolithic -1.026
  200. gendstat: Cameroon_SMA.DG Mongolia_North_N -1.501
  201. gendstat: Cameroon_SMA.DG Russia_HG_Karelia -2.466
  202. gendstat: Morocco_Iberomaurusian MA1 0.925
  203. gendstat: Morocco_Iberomaurusian Brazil_LapaDoSanto_9600BP -0.618
  204. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -0.791
  205. gendstat: Morocco_Iberomaurusian Kostenki14a 0.385
  206. gendstat: Morocco_Iberomaurusian Tianyuan 0.231
  207. gendstat: Morocco_Iberomaurusian WSHG1 -0.414
  208. gendstat: Morocco_Iberomaurusian Tagliente_LPaleolithic 0.773
  209. gendstat: Morocco_Iberomaurusian Mongolia_North_N 0.401
  210. gendstat: Morocco_Iberomaurusian Russia_HG_Karelia -0.734
  211. gendstat: MA1 Brazil_LapaDoSanto_9600BP -1.570
  212. gendstat: MA1 Iran_GanjDareh_N -1.790
  213. gendstat: MA1 Kostenki14a -0.530
  214. gendstat: MA1 Tianyuan -0.690
  215. gendstat: MA1 WSHG1 -1.365
  216. gendstat: MA1 Tagliente_LPaleolithic -0.165
  217. gendstat: MA1 Mongolia_North_N -0.648
  218. gendstat: MA1 Russia_HG_Karelia -1.680
  219. gendstat: Brazil_LapaDoSanto_9600BP Iran_GanjDareh_N -0.117
  220. gendstat: Brazil_LapaDoSanto_9600BP Kostenki14a 0.953
  221. gendstat: Brazil_LapaDoSanto_9600BP Tianyuan 0.845
  222. gendstat: Brazil_LapaDoSanto_9600BP WSHG1 0.135
  223. gendstat: Brazil_LapaDoSanto_9600BP Tagliente_LPaleolithic 1.259
  224. gendstat: Brazil_LapaDoSanto_9600BP Mongolia_North_N 1.311
  225. gendstat: Brazil_LapaDoSanto_9600BP Russia_HG_Karelia -0.152
  226. gendstat: Iran_GanjDareh_N Kostenki14a 1.092
  227. gendstat: Iran_GanjDareh_N Tianyuan 1.000
  228. gendstat: Iran_GanjDareh_N WSHG1 0.241
  229. gendstat: Iran_GanjDareh_N Tagliente_LPaleolithic 1.468
  230. gendstat: Iran_GanjDareh_N Mongolia_North_N 1.350
  231. gendstat: Iran_GanjDareh_N Russia_HG_Karelia -0.047
  232. gendstat: Kostenki14a Tianyuan -0.151
  233. gendstat: Kostenki14a WSHG1 -0.749
  234. gendstat: Kostenki14a Tagliente_LPaleolithic 0.345
  235. gendstat: Kostenki14a Mongolia_North_N -0.046
  236. gendstat: Kostenki14a Russia_HG_Karelia -1.057
  237. gendstat: Tianyuan WSHG1 -0.583
  238. gendstat: Tianyuan Tagliente_LPaleolithic 0.501
  239. gendstat: Tianyuan Mongolia_North_N 0.143
  240. gendstat: Tianyuan Russia_HG_Karelia -0.907
  241. gendstat: WSHG1 Tagliente_LPaleolithic 1.050
  242. gendstat: WSHG1 Mongolia_North_N 0.848
  243. gendstat: WSHG1 Russia_HG_Karelia -0.272
  244. gendstat: Tagliente_LPaleolithic Mongolia_North_N -0.433
  245. gendstat: Tagliente_LPaleolithic Russia_HG_Karelia -1.371
  246. gendstat: Mongolia_North_N Russia_HG_Karelia -1.197
  247.  
  248. ##end of qpAdm: 254.787 seconds cpu 1295.254 Mbytes in use
  249.  
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!