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misnomer001
Apr 28th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1627803765
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Turkmenistan_C_TepeAnau
  11. Iran_GanjDareh_N
  12. Georgia_Kotias.SG
  13. WSHG
  14. Anatolia_N
  15.  
  16. right pops:
  17. Mbuti.DG
  18. Russia_Ust_Ishim.DG
  19. Russia_Kostenki14.SG
  20. Russia_MA1_HG.SG
  21. Han.DG
  22. ONG.SG
  23. Papuan.DG
  24. Italy_North_Villabruna_HG
  25. Czech_Vestonice16
  26. Iberia_ElMiron
  27. Ethiopia_4500BP_published.SG
  28. Karitiana.DG
  29. Israel_Natufian
  30. Georgia_Satsurblia.SG
  31. Russia_HG_Karelia
  32.  
  33. 0 Turkmenistan_C_TepeAnau 3
  34. 1 Iran_GanjDareh_N 8
  35. 2 Georgia_Kotias.SG 1
  36. 3 WSHG 3
  37. 4 Anatolia_N 22
  38. 5 Mbuti.DG 4
  39. 6 Russia_Ust_Ishim.DG 1
  40. 7 Russia_Kostenki14.SG 1
  41. 8 Russia_MA1_HG.SG 1
  42. 9 Han.DG 3
  43. 10 ONG.SG 6
  44. 11 Papuan.DG 15
  45. 12 Italy_North_Villabruna_HG 1
  46. 13 Czech_Vestonice16 1
  47. 14 Iberia_ElMiron 1
  48. 15 Ethiopia_4500BP_published.SG 1
  49. 16 Karitiana.DG 3
  50. 17 Israel_Natufian 6
  51. 18 Georgia_Satsurblia.SG 1
  52. 19 Russia_HG_Karelia 2
  53. jackknife block size: 0.050
  54. snps: 1150509 indivs: 84
  55. number of blocks for block jackknife: 713
  56. ## ncols: 1150509
  57. coverage: Turkmenistan_C_TepeAnau 930778
  58. coverage: Iran_GanjDareh_N 1057358
  59. coverage: Georgia_Kotias.SG 1149097
  60. coverage: WSHG 858019
  61. coverage: Anatolia_N 1139031
  62. coverage: Mbuti.DG 1121438
  63. coverage: Russia_Ust_Ishim.DG 1062044
  64. coverage: Russia_Kostenki14.SG 1048972
  65. coverage: Russia_MA1_HG.SG 805960
  66. coverage: Han.DG 1121416
  67. coverage: ONG.SG 1143397
  68. coverage: Papuan.DG 1121459
  69. coverage: Italy_North_Villabruna_HG 883779
  70. coverage: Czech_Vestonice16 732091
  71. coverage: Iberia_ElMiron 626974
  72. coverage: Ethiopia_4500BP_published.SG 1149598
  73. coverage: Karitiana.DG 1121394
  74. coverage: Israel_Natufian 535079
  75. coverage: Georgia_Satsurblia.SG 801311
  76. coverage: Russia_HG_Karelia 1010733
  77. dof (jackknife): 619.513
  78. numsnps used: 1150509
  79. codimension 1
  80. f4info:
  81. f4rank: 3 dof: 11 chisq: 20.423 tail: 0.0398718392 dofdiff: 13 chisqdiff: -20.423 taildiff: 1
  82. B:
  83. scale 1.000 1.000 1.000
  84. Russia_Ust_Ishim.DG 0.411 0.060 -0.034
  85. Russia_Kostenki14.SG 0.557 0.619 0.058
  86. Russia_MA1_HG.SG 1.699 -1.111 -0.502
  87. Han.DG 0.833 -0.478 -0.238
  88. ONG.SG 0.530 -0.295 -0.075
  89. Papuan.DG 0.582 -0.393 -0.327
  90. Italy_North_Villabruna_HG 0.898 1.529 0.275
  91. Czech_Vestonice16 0.656 1.027 0.045
  92. Iberia_ElMiron 0.744 1.089 0.016
  93. Ethiopia_4500BP_published.SG -0.050 0.104 -0.001
  94. Karitiana.DG 1.675 -1.107 -0.460
  95. Israel_Natufian 0.003 2.285 0.020
  96. Georgia_Satsurblia.SG -0.363 -0.808 3.641
  97. Russia_HG_Karelia 2.142 -0.471 -0.162
  98. A:
  99. scale 342.991 883.238 1085.392
  100. Iran_GanjDareh_N -0.359 -0.412 -0.383
  101. Georgia_Kotias.SG 0.164 -0.105 1.949
  102. WSHG 1.939 -0.285 -0.172
  103. Anatolia_N 0.293 1.933 0.152
  104.  
  105.  
  106. full rank
  107. f4info:
  108. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 20.423 taildiff: 0.0398718392
  109. B:
  110. scale 919.213 553.440 171.910 449.272
  111. Russia_Ust_Ishim.DG 0.057 0.387 0.478 0.413
  112. Russia_Kostenki14.SG -0.709 0.284 0.546 0.885
  113. Russia_MA1_HG.SG -1.345 -0.143 1.689 -0.601
  114. Han.DG -0.715 -0.015 0.838 -0.229
  115. ONG.SG -0.601 -0.025 0.522 -0.165
  116. Papuan.DG -0.307 -0.073 0.605 -0.180
  117. Italy_North_Villabruna_HG -1.517 0.519 0.805 1.910
  118. Czech_Vestonice16 -1.343 0.018 0.559 1.180
  119. Iberia_ElMiron -1.337 0.125 0.663 1.325
  120. Ethiopia_4500BP_published.SG 0.170 0.092 -0.023 0.147
  121. Karitiana.DG -0.929 0.086 1.734 -0.485
  122. Israel_Natufian -1.098 -0.123 -0.132 2.205
  123. Georgia_Satsurblia.SG -0.537 3.617 -0.400 -0.705
  124. Russia_HG_Karelia -1.561 0.586 2.166 0.403
  125. A:
  126. scale 2.000 2.000 2.000 2.000
  127. Iran_GanjDareh_N 2.000 0.000 0.000 0.000
  128. Georgia_Kotias.SG 0.000 2.000 0.000 0.000
  129. WSHG 0.000 0.000 2.000 0.000
  130. Anatolia_N 0.000 0.000 0.000 2.000
  131.  
  132.  
  133. best coefficients: 0.639 0.121 0.085 0.155
  134. Jackknife mean: 0.638340974 0.121498571 0.084806165 0.155354291
  135. std. errors: 0.045 0.033 0.014 0.024
  136.  
  137. error covariance (* 1,000,000)
  138. 2020 -1173 -249 -599
  139. -1173 1099 45 29
  140. -249 45 207 -3
  141. -599 29 -3 573
  142.  
  143.  
  144. summ: Turkmenistan_C_TepeAnau 4 0.039872 0.638 0.121 0.085 0.155 2020 -1173 -249 -599 1099 ...
  145. 45 29 207 -3 573
  146.  
  147. fixed pat wt dof chisq tail prob
  148. 0000 0 11 20.423 0.0398718 0.639 0.121 0.085 0.155
  149. 0001 1 12 57.824 5.60867e-08 0.822 0.096 0.082 0.000
  150. 0010 1 12 51.665 7.10692e-07 0.752 0.099 0.000 0.149
  151. 0100 1 12 33.676 0.00075861 0.771 0.000 0.081 0.148
  152. 1000 1 12 171.237 2.66553e-30 0.000 0.573 0.148 0.279
  153. 0011 2 13 84.195 1.78101e-12 0.929 0.071 0.000 0.000
  154. 0101 2 13 65.582 5.16669e-09 0.918 0.000 0.082 0.000
  155. 0110 2 13 61.266 3.11558e-08 0.856 0.000 0.000 0.144
  156. 1001 2 13 241.778 0 0.000 0.862 0.138 0.000
  157. 1010 2 13 229.899 0 0.000 0.753 0.000 0.247
  158. 1100 2 13 612.037 0 0.000 0.000 0.210 0.790
  159. 0111 3 14 88.180 8.36599e-13 1.000 0.000 0.000 0.000
  160. 1011 3 14 270.277 0 0.000 1.000 0.000 0.000
  161. 1101 3 14 1828.021 0 0.000 0.000 1.000 0.000
  162. 1110 3 14 751.440 0 0.000 0.000 0.000 1.000
  163. best pat: 0000 0.0398718 - -
  164. best pat: 0100 0.00075861 chi(nested): 13.253 p-value for nested model: 0.000272078
  165. best pat: 0110 3.11558e-08 chi(nested): 27.590 p-value for nested model: 1.49935e-07
  166. best pat: 0111 8.36599e-13 chi(nested): 26.914 p-value for nested model: 2.12745e-07
  167.  
  168. coeffs: 0.639 0.121 0.085 0.155
  169.  
  170. ## dscore:: f_4(Base, Fit, Rbase, right2)
  171. ## genstat:: f_4(Base, Fit, right1, right2)
  172.  
  173. details: Iran_GanjDareh_N Russia_Ust_Ishim.DG 0.000062 0.224037
  174. details: Georgia_Kotias.SG Russia_Ust_Ishim.DG 0.000700 1.704634
  175. details: WSHG Russia_Ust_Ishim.DG 0.002782 7.254631
  176. details: Anatolia_N Russia_Ust_Ishim.DG 0.000920 3.233714
  177. dscore: Russia_Ust_Ishim.DG f4: 0.000503 Z: 2.088572
  178.  
  179. details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.000771 -2.512680
  180. details: Georgia_Kotias.SG Russia_Kostenki14.SG 0.000514 1.131729
  181. details: WSHG Russia_Kostenki14.SG 0.003174 8.015051
  182. details: Anatolia_N Russia_Kostenki14.SG 0.001969 6.070742
  183. dscore: Russia_Kostenki14.SG f4: 0.000144 Z: 0.536501
  184.  
  185. details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.001463 -5.008283
  186. details: Georgia_Kotias.SG Russia_MA1_HG.SG -0.000259 -0.595079
  187. details: WSHG Russia_MA1_HG.SG 0.009827 24.160695
  188. details: Anatolia_N Russia_MA1_HG.SG -0.001338 -4.380061
  189. dscore: Russia_MA1_HG.SG f4: -0.000342 Z: -1.339235
  190.  
  191. details: Iran_GanjDareh_N Han.DG -0.000777 -3.109902
  192. details: Georgia_Kotias.SG Han.DG -0.000026 -0.071045
  193. details: WSHG Han.DG 0.004872 14.392622
  194. details: Anatolia_N Han.DG -0.000510 -1.979984
  195. dscore: Han.DG f4: -0.000167 Z: -0.747395
  196.  
  197. details: Iran_GanjDareh_N ONG.SG -0.000654 -2.547066
  198. details: Georgia_Kotias.SG ONG.SG -0.000045 -0.124259
  199. details: WSHG ONG.SG 0.003039 9.192322
  200. details: Anatolia_N ONG.SG -0.000367 -1.413609
  201. dscore: ONG.SG f4: -0.000223 Z: -0.990343
  202.  
  203. details: Iran_GanjDareh_N Papuan.DG -0.000334 -1.305962
  204. details: Georgia_Kotias.SG Papuan.DG -0.000132 -0.351481
  205. details: WSHG Papuan.DG 0.003520 9.933473
  206. details: Anatolia_N Papuan.DG -0.000401 -1.582564
  207. dscore: Papuan.DG f4: 0.000006 Z: 0.028067
  208.  
  209. details: Iran_GanjDareh_N Italy_North_Villabruna_HG -0.001651 -5.406073
  210. details: Georgia_Kotias.SG Italy_North_Villabruna_HG 0.000938 1.965311
  211. details: WSHG Italy_North_Villabruna_HG 0.004683 10.819864
  212. details: Anatolia_N Italy_North_Villabruna_HG 0.004251 12.709789
  213. dscore: Italy_North_Villabruna_HG f4: 0.000115 Z: 0.428294
  214.  
  215. details: Iran_GanjDareh_N Czech_Vestonice16 -0.001461 -4.827980
  216. details: Georgia_Kotias.SG Czech_Vestonice16 0.000032 0.075028
  217. details: WSHG Czech_Vestonice16 0.003250 8.532676
  218. details: Anatolia_N Czech_Vestonice16 0.002627 8.383913
  219. dscore: Czech_Vestonice16 f4: -0.000247 Z: -0.939410
  220.  
  221. details: Iran_GanjDareh_N Iberia_ElMiron -0.001455 -5.185656
  222. details: Georgia_Kotias.SG Iberia_ElMiron 0.000226 0.583319
  223. details: WSHG Iberia_ElMiron 0.003856 10.152129
  224. details: Anatolia_N Iberia_ElMiron 0.002949 10.040419
  225. dscore: Iberia_ElMiron f4: -0.000118 Z: -0.479468
  226.  
  227. details: Iran_GanjDareh_N Ethiopia_4500BP_published.SG 0.000185 0.880673
  228. details: Georgia_Kotias.SG Ethiopia_4500BP_published.SG 0.000166 0.554196
  229. details: WSHG Ethiopia_4500BP_published.SG -0.000131 -0.500968
  230. details: Anatolia_N Ethiopia_4500BP_published.SG 0.000327 1.660557
  231. dscore: Ethiopia_4500BP_published.SG f4: 0.000178 Z: 0.987278
  232.  
  233. details: Iran_GanjDareh_N Karitiana.DG -0.001011 -3.415168
  234. details: Georgia_Kotias.SG Karitiana.DG 0.000156 0.372342
  235. details: WSHG Karitiana.DG 0.010089 25.824890
  236. details: Anatolia_N Karitiana.DG -0.001080 -3.720601
  237. dscore: Karitiana.DG f4: 0.000060 Z: 0.230028
  238.  
  239. details: Iran_GanjDareh_N Israel_Natufian -0.001195 -5.251767
  240. details: Georgia_Kotias.SG Israel_Natufian -0.000222 -0.729676
  241. details: WSHG Israel_Natufian -0.000768 -2.747089
  242. details: Anatolia_N Israel_Natufian 0.004907 19.331446
  243. dscore: Israel_Natufian f4: -0.000094 Z: -0.477316
  244.  
  245. details: Iran_GanjDareh_N Georgia_Satsurblia.SG -0.000584 -2.036344
  246. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.006535 14.535803
  247. details: WSHG Georgia_Satsurblia.SG -0.002324 -6.379736
  248. details: Anatolia_N Georgia_Satsurblia.SG -0.001569 -5.291953
  249. dscore: Georgia_Satsurblia.SG f4: -0.000023 Z: -0.090752
  250.  
  251. details: Iran_GanjDareh_N Russia_HG_Karelia -0.001699 -5.071228
  252. details: Georgia_Kotias.SG Russia_HG_Karelia 0.001059 2.222716
  253. details: WSHG Russia_HG_Karelia 0.012602 30.543902
  254. details: Anatolia_N Russia_HG_Karelia 0.000897 2.850254
  255. dscore: Russia_HG_Karelia f4: 0.000249 Z: 0.862539
  256.  
  257. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 2.089
  258. gendstat: Mbuti.DG Russia_Kostenki14.SG 0.537
  259. gendstat: Mbuti.DG Russia_MA1_HG.SG -1.339
  260. gendstat: Mbuti.DG Han.DG -0.747
  261. gendstat: Mbuti.DG ONG.SG -0.990
  262. gendstat: Mbuti.DG Papuan.DG 0.028
  263. gendstat: Mbuti.DG Italy_North_Villabruna_HG 0.428
  264. gendstat: Mbuti.DG Czech_Vestonice16 -0.939
  265. gendstat: Mbuti.DG Iberia_ElMiron -0.479
  266. gendstat: Mbuti.DG Ethiopia_4500BP_published.SG 0.987
  267. gendstat: Mbuti.DG Karitiana.DG 0.230
  268. gendstat: Mbuti.DG Israel_Natufian -0.477
  269. gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.091
  270. gendstat: Mbuti.DG Russia_HG_Karelia 0.863
  271. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -1.201
  272. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -2.988
  273. gendstat: Russia_Ust_Ishim.DG Han.DG -2.752
  274. gendstat: Russia_Ust_Ishim.DG ONG.SG -2.875
  275. gendstat: Russia_Ust_Ishim.DG Papuan.DG -1.936
  276. gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG -1.270
  277. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 -2.509
  278. gendstat: Russia_Ust_Ishim.DG Iberia_ElMiron -2.185
  279. gendstat: Russia_Ust_Ishim.DG Ethiopia_4500BP_published.SG -1.228
  280. gendstat: Russia_Ust_Ishim.DG Karitiana.DG -1.626
  281. gendstat: Russia_Ust_Ishim.DG Israel_Natufian -2.253
  282. gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -1.841
  283. gendstat: Russia_Ust_Ishim.DG Russia_HG_Karelia -0.785
  284. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -1.659
  285. gendstat: Russia_Kostenki14.SG Han.DG -1.122
  286. gendstat: Russia_Kostenki14.SG ONG.SG -1.360
  287. gendstat: Russia_Kostenki14.SG Papuan.DG -0.519
  288. gendstat: Russia_Kostenki14.SG Italy_North_Villabruna_HG -0.100
  289. gendstat: Russia_Kostenki14.SG Czech_Vestonice16 -1.332
  290. gendstat: Russia_Kostenki14.SG Iberia_ElMiron -0.916
  291. gendstat: Russia_Kostenki14.SG Ethiopia_4500BP_published.SG 0.115
  292. gendstat: Russia_Kostenki14.SG Karitiana.DG -0.285
  293. gendstat: Russia_Kostenki14.SG Israel_Natufian -0.871
  294. gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -0.552
  295. gendstat: Russia_Kostenki14.SG Russia_HG_Karelia 0.344
  296. gendstat: Russia_MA1_HG.SG Han.DG 0.666
  297. gendstat: Russia_MA1_HG.SG ONG.SG 0.443
  298. gendstat: Russia_MA1_HG.SG Papuan.DG 1.247
  299. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG 1.508
  300. gendstat: Russia_MA1_HG.SG Czech_Vestonice16 0.325
  301. gendstat: Russia_MA1_HG.SG Iberia_ElMiron 0.740
  302. gendstat: Russia_MA1_HG.SG Ethiopia_4500BP_published.SG 1.820
  303. gendstat: Russia_MA1_HG.SG Karitiana.DG 1.492
  304. gendstat: Russia_MA1_HG.SG Israel_Natufian 0.904
  305. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 1.056
  306. gendstat: Russia_MA1_HG.SG Russia_HG_Karelia 2.015
  307. gendstat: Han.DG ONG.SG -0.285
  308. gendstat: Han.DG Papuan.DG 0.866
  309. gendstat: Han.DG Italy_North_Villabruna_HG 1.018
  310. gendstat: Han.DG Czech_Vestonice16 -0.295
  311. gendstat: Han.DG Iberia_ElMiron 0.186
  312. gendstat: Han.DG Ethiopia_4500BP_published.SG 1.386
  313. gendstat: Han.DG Karitiana.DG 1.094
  314. gendstat: Han.DG Israel_Natufian 0.308
  315. gendstat: Han.DG Georgia_Satsurblia.SG 0.536
  316. gendstat: Han.DG Russia_HG_Karelia 1.541
  317. gendstat: ONG.SG Papuan.DG 1.093
  318. gendstat: ONG.SG Italy_North_Villabruna_HG 1.240
  319. gendstat: ONG.SG Czech_Vestonice16 -0.087
  320. gendstat: ONG.SG Iberia_ElMiron 0.418
  321. gendstat: ONG.SG Ethiopia_4500BP_published.SG 1.546
  322. gendstat: ONG.SG Karitiana.DG 1.192
  323. gendstat: ONG.SG Israel_Natufian 0.531
  324. gendstat: ONG.SG Georgia_Satsurblia.SG 0.727
  325. gendstat: ONG.SG Russia_HG_Karelia 1.634
  326. gendstat: Papuan.DG Italy_North_Villabruna_HG 0.395
  327. gendstat: Papuan.DG Czech_Vestonice16 -0.889
  328. gendstat: Papuan.DG Iberia_ElMiron -0.475
  329. gendstat: Papuan.DG Ethiopia_4500BP_published.SG 0.652
  330. gendstat: Papuan.DG Karitiana.DG 0.228
  331. gendstat: Papuan.DG Israel_Natufian -0.415
  332. gendstat: Papuan.DG Georgia_Satsurblia.SG -0.108
  333. gendstat: Papuan.DG Russia_HG_Karelia 0.850
  334. gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 -1.240
  335. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron -0.853
  336. gendstat: Italy_North_Villabruna_HG Ethiopia_4500BP_published.SG 0.208
  337. gendstat: Italy_North_Villabruna_HG Karitiana.DG -0.187
  338. gendstat: Italy_North_Villabruna_HG Israel_Natufian -0.778
  339. gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG -0.432
  340. gendstat: Italy_North_Villabruna_HG Russia_HG_Karelia 0.444
  341. gendstat: Czech_Vestonice16 Iberia_ElMiron 0.450
  342. gendstat: Czech_Vestonice16 Ethiopia_4500BP_published.SG 1.485
  343. gendstat: Czech_Vestonice16 Karitiana.DG 1.015
  344. gendstat: Czech_Vestonice16 Israel_Natufian 0.561
  345. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 0.710
  346. gendstat: Czech_Vestonice16 Russia_HG_Karelia 1.586
  347. gendstat: Iberia_ElMiron Ethiopia_4500BP_published.SG 1.046
  348. gendstat: Iberia_ElMiron Karitiana.DG 0.637
  349. gendstat: Iberia_ElMiron Israel_Natufian 0.094
  350. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG 0.325
  351. gendstat: Iberia_ElMiron Russia_HG_Karelia 1.209
  352. gendstat: Ethiopia_4500BP_published.SG Karitiana.DG -0.413
  353. gendstat: Ethiopia_4500BP_published.SG Israel_Natufian -1.136
  354. gendstat: Ethiopia_4500BP_published.SG Georgia_Satsurblia.SG -0.702
  355. gendstat: Ethiopia_4500BP_published.SG Russia_HG_Karelia 0.226
  356. gendstat: Karitiana.DG Israel_Natufian -0.551
  357. gendstat: Karitiana.DG Georgia_Satsurblia.SG -0.280
  358. gendstat: Karitiana.DG Russia_HG_Karelia 0.660
  359. gendstat: Israel_Natufian Georgia_Satsurblia.SG 0.260
  360. gendstat: Israel_Natufian Russia_HG_Karelia 1.224
  361. gendstat: Georgia_Satsurblia.SG Russia_HG_Karelia 0.845
  362.  
  363. ##end of qpAdm: 378.537 seconds cpu 1534.497 Mbytes in use
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