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- samtools SondeFASTA.fasta.subread.BAM > SondeFASTA.sorted.bam
- samtools index SondeFASTA.sorted.bam
- bamCoverage -b 1.SondeFASTA.sorted.bam --normalizeUsing RPKM -o SondeFASTA.bw --verbose --numberOfProcessors max/2 --binSize 1
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