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misnomer001

Hasanlu_LBA_A bmac + fedorovo fail

misnomer001
Sep 17th, 2022
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  1. qpAdm: parameter file: parqpa2
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstats13.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 1574323351
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. IRN_Hasanlu_LBA_A
  18. Uzbekistan_SappaliTepe_BA
  19. Kazakhstan_Shoendykol_MLBA_Fedorovo
  20.  
  21. right pops:
  22. Mbuti.DG
  23. IRQ_PPN
  24. EHG
  25. CHG
  26. Iran_GanjDareh_N
  27. Mongolia_North_N
  28. Serbia_IronGates_Mesolithic
  29. Turkey_N
  30. ONG.SG
  31. Tarim_EMBA1
  32. WSHG
  33. IVCp
  34. Tajikistan_C_Sarazm
  35.  
  36. codimension 1
  37. f4info:
  38. f4rank: 1 dof: 11 chisq: 24.008 tail: 0.012697532 dofdiff: 13 chisqdiff: -24.008 taildiff: 1
  39. B:
  40. scale 1.000
  41. IRQ_PPN -0.189
  42. EHG 1.680
  43. CHG -0.110
  44. Iran_GanjDareh_N -0.823
  45. Mongolia_North_N 0.615
  46. Serbia_IronGates_Mesolithic 1.960
  47. Turkey_N 0.720
  48. ONG.SG 0.228
  49. Tarim_EMBA1 1.186
  50. WSHG 1.445
  51. IVCp -0.183
  52. Tajikistan_C_Sarazm -0.365
  53. A:
  54. scale 398.527
  55. Uzbekistan_SappaliTepe_BA -0.315
  56. Kazakhstan_Shoendykol_MLBA_Fedorovo 1.379
  57.  
  58.  
  59. full rank
  60. f4info:
  61. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 24.008 taildiff: 0.012697532
  62. B:
  63. scale 1163.340 279.824
  64. IRQ_PPN 0.773 -0.031
  65. EHG -1.194 1.735
  66. CHG 0.273 -0.070
  67. Iran_GanjDareh_N 1.477 -0.605
  68. Mongolia_North_N -0.382 0.653
  69. Serbia_IronGates_Mesolithic -0.968 2.102
  70. Turkey_N -0.556 0.745
  71. ONG.SG 0.095 0.314
  72. Tarim_EMBA1 -1.789 1.016
  73. WSHG -1.429 1.414
  74. IVCp 0.899 0.014
  75. Tajikistan_C_Sarazm 0.518 -0.290
  76. A:
  77. scale 1.414 1.414
  78. Uzbekistan_SappaliTepe_BA 1.414 0.000
  79. Kazakhstan_Shoendykol_MLBA_Fedorovo 0.000 1.414
  80.  
  81.  
  82. best coefficients: 0.814 0.186
  83. totmean: 0.814 0.186
  84. boot mean: 0.814 0.186
  85. std. errors: 0.027 0.027
  86.  
  87. error covariance (* 1,000,000)
  88. 710 -710
  89. -710 710
  90.  
  91.  
  92. summ: IRN_Hasanlu_LBA_A 2 0.012698 0.814 0.186 710 -710 710
  93.  
  94. fixed pat wt dof chisq tail prob
  95. 00 0 11 24.008 0.0126975 0.814 0.186
  96. 01 1 12 69.132 4.65372e-10 1.000 0.000
  97. 10 1 12 697.014 0 0.000 1.000
  98. best pat: 00 0.0126975 - -
  99. best pat: 01 4.65372e-10 chi(nested): 45.123 p-value for nested model: 1.84992e-11
  100.  
  101. coeffs: 0.814 0.186
  102.  
  103. ## dscore:: f_4(Base, Fit, Rbase, right2)
  104. ## genstat:: f_4(Base, Fit, right1, right2)
  105.  
  106. details: Uzbekistan_SappaliTepe_BA IRQ_PPN 0.000665 1.401240
  107. details: Kazakhstan_Shoendykol_MLBA_Fedorovo IRQ_PPN -0.000112 -0.213588
  108. dscore: IRQ_PPN f4: 0.000520 Z: 1.113505
  109.  
  110. details: Uzbekistan_SappaliTepe_BA EHG -0.001026 -2.401954
  111. details: Kazakhstan_Shoendykol_MLBA_Fedorovo EHG 0.006200 13.191712
  112. dscore: EHG f4: 0.000319 Z: 0.760847
  113.  
  114. details: Uzbekistan_SappaliTepe_BA CHG 0.000235 0.542330
  115. details: Kazakhstan_Shoendykol_MLBA_Fedorovo CHG -0.000250 -0.519054
  116. dscore: CHG f4: 0.000144 Z: 0.339566
  117.  
  118. details: Uzbekistan_SappaliTepe_BA Iran_GanjDareh_N 0.001270 3.447488
  119. details: Kazakhstan_Shoendykol_MLBA_Fedorovo Iran_GanjDareh_N -0.002162 -5.358411
  120. dscore: Iran_GanjDareh_N f4: 0.000631 Z: 1.746486
  121.  
  122. details: Uzbekistan_SappaliTepe_BA Mongolia_North_N -0.000328 -0.869923
  123. details: Kazakhstan_Shoendykol_MLBA_Fedorovo Mongolia_North_N 0.002334 5.465886
  124. dscore: Mongolia_North_N f4: 0.000167 Z: 0.449875
  125.  
  126. details: Uzbekistan_SappaliTepe_BA Serbia_IronGates_Mesolithic -0.000832 -2.151826
  127. details: Kazakhstan_Shoendykol_MLBA_Fedorovo Serbia_IronGates_Mesolithic 0.007514 17.742998
  128. dscore: Serbia_IronGates_Mesolithic f4: 0.000721 Z: 1.902490
  129.  
  130. details: Uzbekistan_SappaliTepe_BA Turkey_N -0.000478 -1.433412
  131. details: Kazakhstan_Shoendykol_MLBA_Fedorovo Turkey_N 0.002663 7.283001
  132. dscore: Turkey_N f4: 0.000107 Z: 0.324543
  133.  
  134. details: Uzbekistan_SappaliTepe_BA ONG.SG 0.000082 0.214406
  135. details: Kazakhstan_Shoendykol_MLBA_Fedorovo ONG.SG 0.001122 2.617214
  136. dscore: ONG.SG f4: 0.000275 Z: 0.734290
  137.  
  138. details: Uzbekistan_SappaliTepe_BA Tarim_EMBA1 -0.001538 -3.317668
  139. details: Kazakhstan_Shoendykol_MLBA_Fedorovo Tarim_EMBA1 0.003631 7.123420
  140. dscore: Tarim_EMBA1 f4: -0.000576 Z: -1.263791
  141.  
  142. details: Uzbekistan_SappaliTepe_BA WSHG -0.001229 -2.580591
  143. details: Kazakhstan_Shoendykol_MLBA_Fedorovo WSHG 0.005055 9.620463
  144. dscore: WSHG f4: -0.000059 Z: -0.126919
  145.  
  146. details: Uzbekistan_SappaliTepe_BA IVCp 0.000773 2.139248
  147. details: Kazakhstan_Shoendykol_MLBA_Fedorovo IVCp 0.000050 0.127401
  148. dscore: IVCp f4: 0.000638 Z: 1.800688
  149.  
  150. details: Uzbekistan_SappaliTepe_BA Tajikistan_C_Sarazm 0.000445 0.979915
  151. details: Kazakhstan_Shoendykol_MLBA_Fedorovo Tajikistan_C_Sarazm -0.001035 -2.119275
  152. dscore: Tajikistan_C_Sarazm f4: 0.000170 Z: 0.380384
  153.  
  154. gendstat: Mbuti.DG IRQ_PPN 1.114
  155. gendstat: Mbuti.DG EHG 0.761
  156. gendstat: Mbuti.DG CHG 0.340
  157. gendstat: Mbuti.DG Iran_GanjDareh_N 1.746
  158. gendstat: Mbuti.DG Mongolia_North_N 0.450
  159. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 1.902
  160. gendstat: Mbuti.DG Turkey_N 0.325
  161. gendstat: Mbuti.DG ONG.SG 0.734
  162. gendstat: Mbuti.DG Tarim_EMBA1 -1.264
  163. gendstat: Mbuti.DG WSHG -0.127
  164. gendstat: Mbuti.DG IVCp 1.801
  165. gendstat: Mbuti.DG Tajikistan_C_Sarazm 0.380
  166. gendstat: IRQ_PPN EHG -0.415
  167. gendstat: IRQ_PPN CHG -0.807
  168. gendstat: IRQ_PPN Iran_GanjDareh_N 0.256
  169. gendstat: IRQ_PPN Mongolia_North_N -0.762
  170. gendstat: IRQ_PPN Serbia_IronGates_Mesolithic 0.488
  171. gendstat: IRQ_PPN Turkey_N -1.112
  172. gendstat: IRQ_PPN ONG.SG -0.528
  173. gendstat: IRQ_PPN Tarim_EMBA1 -2.138
  174. gendstat: IRQ_PPN WSHG -1.098
  175. gendstat: IRQ_PPN IVCp 0.286
  176. gendstat: IRQ_PPN Tajikistan_C_Sarazm -0.741
  177. gendstat: EHG CHG -0.394
  178. gendstat: EHG Iran_GanjDareh_N 0.756
  179. gendstat: EHG Mongolia_North_N -0.389
  180. gendstat: EHG Serbia_IronGates_Mesolithic 1.257
  181. gendstat: EHG Turkey_N -0.579
  182. gendstat: EHG ONG.SG -0.104
  183. gendstat: EHG Tarim_EMBA1 -2.463
  184. gendstat: EHG WSHG -0.963
  185. gendstat: EHG IVCp 0.869
  186. gendstat: EHG Tajikistan_C_Sarazm -0.333
  187. gendstat: CHG Iran_GanjDareh_N 1.268
  188. gendstat: CHG Mongolia_North_N 0.052
  189. gendstat: CHG Serbia_IronGates_Mesolithic 1.452
  190. gendstat: CHG Turkey_N -0.102
  191. gendstat: CHG ONG.SG 0.308
  192. gendstat: CHG Tarim_EMBA1 -1.526
  193. gendstat: CHG WSHG -0.417
  194. gendstat: CHG IVCp 1.328
  195. gendstat: CHG Tajikistan_C_Sarazm 0.057
  196. gendstat: Iran_GanjDareh_N Mongolia_North_N -1.220
  197. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic 0.243
  198. gendstat: Iran_GanjDareh_N Turkey_N -1.633
  199. gendstat: Iran_GanjDareh_N ONG.SG -0.964
  200. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -2.799
  201. gendstat: Iran_GanjDareh_N WSHG -1.549
  202. gendstat: Iran_GanjDareh_N IVCp 0.023
  203. gendstat: Iran_GanjDareh_N Tajikistan_C_Sarazm -1.175
  204. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic 1.539
  205. gendstat: Mongolia_North_N Turkey_N -0.167
  206. gendstat: Mongolia_North_N ONG.SG 0.330
  207. gendstat: Mongolia_North_N Tarim_EMBA1 -1.929
  208. gendstat: Mongolia_North_N WSHG -0.564
  209. gendstat: Mongolia_North_N IVCp 1.472
  210. gendstat: Mongolia_North_N Tajikistan_C_Sarazm 0.006
  211. gendstat: Serbia_IronGates_Mesolithic Turkey_N -2.328
  212. gendstat: Serbia_IronGates_Mesolithic ONG.SG -1.167
  213. gendstat: Serbia_IronGates_Mesolithic Tarim_EMBA1 -3.332
  214. gendstat: Serbia_IronGates_Mesolithic WSHG -1.996
  215. gendstat: Serbia_IronGates_Mesolithic IVCp -0.242
  216. gendstat: Serbia_IronGates_Mesolithic Tajikistan_C_Sarazm -1.364
  217. gendstat: Turkey_N ONG.SG 0.446
  218. gendstat: Turkey_N Tarim_EMBA1 -1.599
  219. gendstat: Turkey_N WSHG -0.379
  220. gendstat: Turkey_N IVCp 1.737
  221. gendstat: Turkey_N Tajikistan_C_Sarazm 0.161
  222. gendstat: ONG.SG Tarim_EMBA1 -2.100
  223. gendstat: ONG.SG WSHG -0.768
  224. gendstat: ONG.SG IVCp 1.092
  225. gendstat: ONG.SG Tajikistan_C_Sarazm -0.236
  226. gendstat: Tarim_EMBA1 WSHG 1.488
  227. gendstat: Tarim_EMBA1 IVCp 3.054
  228. gendstat: Tarim_EMBA1 Tajikistan_C_Sarazm 1.665
  229. gendstat: WSHG IVCp 1.682
  230. gendstat: WSHG Tajikistan_C_Sarazm 0.473
  231. gendstat: IVCp Tajikistan_C_Sarazm -1.230
  232.  
  233. ##end of qpAdm: 1.713 seconds cpu 0.729 Mbytes in use
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