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songbird log

Dec 16th, 2019
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  1. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:516: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  2. _np_qint8 = np.dtype([("qint8", np.int8, 1)])
  3. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:517: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  4. _np_quint8 = np.dtype([("quint8", np.uint8, 1)])
  5. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:518: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  6. _np_qint16 = np.dtype([("qint16", np.int16, 1)])
  7. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:519: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  8. _np_quint16 = np.dtype([("quint16", np.uint16, 1)])
  9. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:520: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  10. _np_qint32 = np.dtype([("qint32", np.int32, 1)])
  11. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorflow/python/framework/dtypes.py:525: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  12. np_resource = np.dtype([("resource", np.ubyte, 1)])
  13. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:541: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  14. _np_qint8 = np.dtype([("qint8", np.int8, 1)])
  15. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:542: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  16. _np_quint8 = np.dtype([("quint8", np.uint8, 1)])
  17. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:543: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  18. _np_qint16 = np.dtype([("qint16", np.int16, 1)])
  19. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:544: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  20. _np_quint16 = np.dtype([("quint16", np.uint16, 1)])
  21. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:545: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  22. _np_qint32 = np.dtype([("qint32", np.int32, 1)])
  23. /home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/tensorboard/compat/tensorflow_stub/dtypes.py:550: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  24. np_resource = np.dtype([("resource", np.ubyte, 1)])
  25. Traceback (most recent call last):
  26. File "/home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/q2cli/commands.py", line 327, in __call__
  27. results = action(**arguments)
  28. File "</home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/decorator.py:decorator-gen-121>", line 2, in multinomial
  29. File "/home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 240, in bound_callable
  30. output_types, provenance)
  31. File "/home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 383, in _callable_executor_
  32. output_views = self._callable(**view_args)
  33. File "/home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/songbird/q2/_method.py", line 41, in multinomial
  34. dense_table = table.to_dataframe().to_dense().T
  35. File "/home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/biom/table.py", line 4052, in to_dataframe
  36. return constructor(mat, index=index, columns=columns)
  37. File "/home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/pandas/core/sparse/frame.py", line 102, in __init__
  38. mgr = self._init_matrix(data, index, columns, dtype=dtype)
  39. File "/home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/pandas/core/sparse/frame.py", line 199, in _init_matrix
  40. index, columns = self._prep_index(data, index, columns)
  41. File "/home/genomica/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/pandas/core/sparse/frame.py", line 242, in _prep_index
  42. .format(columns=len(columns), K=K))
  43. ValueError: Column length mismatch: 15 vs. 0
  44.  
  45. Plugin error from songbird:
  46.  
  47. Column length mismatch: 15 vs. 0
  48.  
  49. See above for debug info.
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