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misnomer001

alalakh outlier with sintashta right pop

misnomer001
May 30th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1798884880
  4. read 1073741824 bytes
  5. read 2147483648 bytes
  6. read 2179966984 bytes
  7. packed geno read OK
  8. end of inpack
  9.  
  10. left pops:
  11. Alalakh_MLBA_outlier
  12. Uzbekistan_BA_Dzharkutan1
  13. Russia_Steppe_Catacomb
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_UstBelaya_Angara
  24. ONG.SG
  25. Botai
  26. Russia_MLBA_Sintashta
  27.  
  28. 0 Alalakh_MLBA_outlier 1
  29. 1 Uzbekistan_BA_Dzharkutan1 7
  30. 2 Russia_Steppe_Catacomb 4
  31. 3 Cameroon_SMA.DG 1
  32. 4 EEHG 5
  33. 5 WSHG 3
  34. 6 PPN 11
  35. 7 WEHG 33
  36. 8 Anatolia_N 22
  37. 9 Iran_GanjDareh_N 8
  38. 10 Russia_UstBelaya_Angara 8
  39. 11 ONG.SG 6
  40. 12 Botai 2
  41. 13 Russia_MLBA_Sintashta 36
  42. jackknife block size: 0.050
  43. snps: 1150506 indivs: 147
  44. number of blocks for block jackknife: 713
  45. ## ncols: 1150506
  46. coverage: Alalakh_MLBA_outlier 733730
  47. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  48. coverage: Russia_Steppe_Catacomb 863785
  49. coverage: Cameroon_SMA.DG 1140138
  50. coverage: EEHG 1052093
  51. coverage: WSHG 858019
  52. coverage: PPN 847771
  53. coverage: WEHG 1140599
  54. coverage: Anatolia_N 1139031
  55. coverage: Iran_GanjDareh_N 1057358
  56. coverage: Russia_UstBelaya_Angara 1072574
  57. coverage: ONG.SG 1143397
  58. coverage: Botai 926654
  59. coverage: Russia_MLBA_Sintashta 1128449
  60. dof (jackknife): 621.792
  61. numsnps used: 1150506
  62. codimension 1
  63. f4info:
  64. f4rank: 1 dof: 9 chisq: 12.673 tail: 0.177960959 dofdiff: 11 chisqdiff: -12.673 taildiff: 1
  65. B:
  66. scale 1.000
  67. EEHG 1.567
  68. WSHG 1.349
  69. PPN 0.156
  70. WEHG 1.522
  71. Anatolia_N 0.294
  72. Iran_GanjDareh_N -0.648
  73. Russia_UstBelaya_Angara 0.502
  74. ONG.SG 0.007
  75. Botai 1.218
  76. Russia_MLBA_Sintashta 1.069
  77. A:
  78. scale 485.859
  79. Uzbekistan_BA_Dzharkutan1 -0.167
  80. Russia_Steppe_Catacomb 1.404
  81.  
  82.  
  83. full rank
  84. f4info:
  85. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 12.673 taildiff: 0.177960959
  86. B:
  87. scale 2029.083 349.590
  88. EEHG -0.587 1.665
  89. WSHG -1.453 1.302
  90. PPN -0.132 0.171
  91. WEHG -1.079 1.550
  92. Anatolia_N -0.127 0.321
  93. Iran_GanjDareh_N 0.529 -0.628
  94. Russia_UstBelaya_Angara -1.651 0.329
  95. ONG.SG -0.765 -0.089
  96. Botai -1.404 1.157
  97. Russia_MLBA_Sintashta -0.887 1.072
  98. A:
  99. scale 1.414 1.414
  100. Uzbekistan_BA_Dzharkutan1 1.414 0.000
  101. Russia_Steppe_Catacomb 0.000 1.414
  102.  
  103.  
  104. best coefficients: 0.894 0.106
  105. Jackknife mean: 0.893711680 0.106288320
  106. std. errors: 0.031 0.031
  107.  
  108. error covariance (* 1,000,000)
  109. 982 -982
  110. -982 982
  111.  
  112.  
  113. summ: Alalakh_MLBA_outlier 2 0.177961 0.894 0.106 982 -982 982
  114.  
  115. fixed pat wt dof chisq tail prob
  116. 00 0 9 12.673 0.177961 0.894 0.106
  117. 01 1 10 23.429 0.0092697 1.000 0.000
  118. 10 1 10 616.187 0 0.000 1.000
  119. best pat: 00 0.177961 - -
  120. best pat: 01 0.0092697 chi(nested): 10.756 p-value for nested model: 0.00103961
  121.  
  122. coeffs: 0.894 0.106
  123.  
  124. ## dscore:: f_4(Base, Fit, Rbase, right2)
  125. ## genstat:: f_4(Base, Fit, right1, right2)
  126.  
  127. details: Uzbekistan_BA_Dzharkutan1 EEHG -0.000289 -0.876400
  128. details: Russia_Steppe_Catacomb EEHG 0.004763 13.483706
  129. dscore: EEHG f4: 0.000247 Z: 0.762481
  130.  
  131. details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000716 -2.047235
  132. details: Russia_Steppe_Catacomb WSHG 0.003723 9.530547
  133. dscore: WSHG f4: -0.000245 Z: -0.711273
  134.  
  135. details: Uzbekistan_BA_Dzharkutan1 PPN -0.000065 -0.206771
  136. details: Russia_Steppe_Catacomb PPN 0.000490 1.432364
  137. dscore: PPN f4: -0.000006 Z: -0.020473
  138.  
  139. details: Uzbekistan_BA_Dzharkutan1 WEHG -0.000532 -1.714633
  140. details: Russia_Steppe_Catacomb WEHG 0.004435 13.134736
  141. dscore: WEHG f4: -0.000004 Z: -0.014600
  142.  
  143. details: Uzbekistan_BA_Dzharkutan1 Anatolia_N -0.000063 -0.222212
  144. details: Russia_Steppe_Catacomb Anatolia_N 0.000919 3.057470
  145. dscore: Anatolia_N f4: 0.000042 Z: 0.150510
  146.  
  147. details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.000261 0.894463
  148. details: Russia_Steppe_Catacomb Iran_GanjDareh_N -0.001795 -5.697073
  149. dscore: Iran_GanjDareh_N f4: 0.000042 Z: 0.148200
  150.  
  151. details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.000814 -2.709452
  152. details: Russia_Steppe_Catacomb Russia_UstBelaya_Angara 0.000942 2.867572
  153. dscore: Russia_UstBelaya_Angara f4: -0.000627 Z: -2.125589
  154.  
  155. details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.000377 -1.212383
  156. details: Russia_Steppe_Catacomb ONG.SG -0.000255 -0.760087
  157. dscore: ONG.SG f4: -0.000364 Z: -1.188558
  158.  
  159. details: Uzbekistan_BA_Dzharkutan1 Botai -0.000692 -1.928682
  160. details: Russia_Steppe_Catacomb Botai 0.003309 8.645799
  161. dscore: Botai f4: -0.000267 Z: -0.759231
  162.  
  163. details: Uzbekistan_BA_Dzharkutan1 Russia_MLBA_Sintashta -0.000437 -1.592201
  164. details: Russia_Steppe_Catacomb Russia_MLBA_Sintashta 0.003066 10.182202
  165. dscore: Russia_MLBA_Sintashta f4: -0.000065 Z: -0.241824
  166.  
  167. gendstat: Cameroon_SMA.DG EEHG 0.762
  168. gendstat: Cameroon_SMA.DG WSHG -0.711
  169. gendstat: Cameroon_SMA.DG PPN -0.020
  170. gendstat: Cameroon_SMA.DG WEHG -0.015
  171. gendstat: Cameroon_SMA.DG Anatolia_N 0.151
  172. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 0.148
  173. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara -2.126
  174. gendstat: Cameroon_SMA.DG ONG.SG -1.189
  175. gendstat: Cameroon_SMA.DG Botai -0.759
  176. gendstat: Cameroon_SMA.DG Russia_MLBA_Sintashta -0.242
  177. gendstat: EEHG WSHG -1.757
  178. gendstat: EEHG PPN -0.779
  179. gendstat: EEHG WEHG -1.048
  180. gendstat: EEHG Anatolia_N -0.778
  181. gendstat: EEHG Iran_GanjDareh_N -0.667
  182. gendstat: EEHG Russia_UstBelaya_Angara -3.057
  183. gendstat: EEHG ONG.SG -1.921
  184. gendstat: EEHG Botai -1.879
  185. gendstat: EEHG Russia_MLBA_Sintashta -1.448
  186. gendstat: WSHG PPN 0.675
  187. gendstat: WSHG WEHG 0.836
  188. gendstat: WSHG Anatolia_N 0.973
  189. gendstat: WSHG Iran_GanjDareh_N 0.872
  190. gendstat: WSHG Russia_UstBelaya_Angara -1.287
  191. gendstat: WSHG ONG.SG -0.359
  192. gendstat: WSHG Botai -0.080
  193. gendstat: WSHG Russia_MLBA_Sintashta 0.691
  194. gendstat: PPN WEHG 0.007
  195. gendstat: PPN Anatolia_N 0.223
  196. gendstat: PPN Iran_GanjDareh_N 0.164
  197. gendstat: PPN Russia_UstBelaya_Angara -2.001
  198. gendstat: PPN ONG.SG -1.105
  199. gendstat: PPN Botai -0.705
  200. gendstat: PPN Russia_MLBA_Sintashta -0.248
  201. gendstat: WEHG Anatolia_N 0.226
  202. gendstat: WEHG Iran_GanjDareh_N 0.173
  203. gendstat: WEHG Russia_UstBelaya_Angara -2.355
  204. gendstat: WEHG ONG.SG -1.233
  205. gendstat: WEHG Botai -0.891
  206. gendstat: WEHG Russia_MLBA_Sintashta -0.359
  207. gendstat: Anatolia_N Iran_GanjDareh_N 0.003
  208. gendstat: Anatolia_N Russia_UstBelaya_Angara -2.572
  209. gendstat: Anatolia_N ONG.SG -1.448
  210. gendstat: Anatolia_N Botai -0.999
  211. gendstat: Anatolia_N Russia_MLBA_Sintashta -0.702
  212. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara -2.397
  213. gendstat: Iran_GanjDareh_N ONG.SG -1.400
  214. gendstat: Iran_GanjDareh_N Botai -0.948
  215. gendstat: Iran_GanjDareh_N Russia_MLBA_Sintashta -0.479
  216. gendstat: Russia_UstBelaya_Angara ONG.SG 1.037
  217. gendstat: Russia_UstBelaya_Angara Botai 1.293
  218. gendstat: Russia_UstBelaya_Angara Russia_MLBA_Sintashta 2.437
  219. gendstat: ONG.SG Botai 0.294
  220. gendstat: ONG.SG Russia_MLBA_Sintashta 1.145
  221. gendstat: Botai Russia_MLBA_Sintashta 0.746
  222.  
  223. ##end of qpAdm: 382.233 seconds cpu 1257.591 Mbytes in use
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