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Feb 20th, 2018
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  1. --- mummerplot.orig 2017-04-04 12:16:56.000000000 -0700
  2. +++ mummerplot 2018-02-07 12:24:36.000000000 -0800
  3. @@ -881,7 +881,7 @@
  4. my ($refoff, $reflen, $refdir);
  5. my ($qryoff, $qrylen, $qrydir);
  6.  
  7. - if ( defined (%$rref) ) {
  8. + if ( %$rref ) {
  9. #-- skip reference sequence or set atts from hash
  10. if ( !exists ($rref->{$idR}) ) { next; }
  11. else { ($refoff, $reflen, $refdir) = @{$rref->{$idR}}; }
  12. @@ -891,7 +891,7 @@
  13. ($refoff, $reflen, $refdir) = (0, $lenR, 1);
  14. }
  15.  
  16. - if ( defined (%$qref) ) {
  17. + if ( %$qref ) {
  18. #-- skip query sequence or set atts from hash
  19. if ( !exists ($qref->{$idQ}) ) { next; }
  20. else { ($qryoff, $qrylen, $qrydir) = @{$qref->{$idQ}}; }
  21. @@ -978,7 +978,7 @@
  22. my ($refoff, $reflen, $refdir);
  23. my ($qryoff, $qrylen, $qrydir);
  24.  
  25. - if ( defined (%$rref) ) {
  26. + if ( %$rref ) {
  27. #-- skip reference sequence or set atts from hash
  28. if ( !exists ($rref->{$idR}) ) { next; }
  29. else { ($refoff, $reflen, $refdir) = @{$rref->{$idR}}; }
  30. @@ -988,7 +988,7 @@
  31. ($refoff, $reflen, $refdir) = (0, $lenR, 1);
  32. }
  33.  
  34. - if ( defined (%$qref) ) {
  35. + if ( %$qref ) {
  36. #-- skip query sequence or set atts from hash
  37. if ( !exists ($qref->{$idQ}) ) { next; }
  38. else { ($qryoff, $qrylen, $qrydir) = @{$qref->{$idQ}}; }
  39. @@ -1031,7 +1031,7 @@
  40. }
  41.  
  42.  
  43. - if ( !defined (%$rref) ) {
  44. + if ( !%$rref ) {
  45. if ( $ismultiref ) {
  46. print STDERR
  47. "WARNING: Multiple ref sequences overlaid, try -R or -r\n";
  48. @@ -1041,7 +1041,7 @@
  49. }
  50. }
  51.  
  52. - if ( !defined (%$qref) ) {
  53. + if ( !%$qref ) {
  54. if ( $ismultiqry && !$OPT_coverage ) {
  55. print STDERR
  56. "WARNING: Multiple qry sequences overlaid, try -Q, -q or -c\n";
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