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Neuron 7.5-2 arch linux

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  1. ==> Starting build()...
  2. checking for egrep... grep -E
  3. Configuring NCURSES 6.1 ABI 6 (Wed Oct  3 19:50:35 BST 2018)
  4. checking for package version... 6.0
  5. checking for package patch date... 20180127
  6. configure: WARNING: overriding ABI version 6 to 5
  7. checking build system type... x86_64-pc-linux-gnu
  8. checking host system type... x86_64-pc-linux-gnu
  9. checking target system type... x86_64-pc-linux-gnu
  10. Configuring for linux-gnu
  11. checking for prefix... /usr
  12. checking for gcc... gcc
  13. checking for C compiler default output... a.out
  14. checking whether the C compiler works... yes
  15. checking whether we are cross compiling... no
  16. checking for executable suffix...
  17. checking for object suffix... o
  18. checking whether we are using the GNU C compiler... yes
  19. checking whether gcc accepts -g... yes
  20. checking version of gcc... 8.2.1
  21. checking for gcc option to accept ANSI C... none needed
  22. checking $CC variable... ok
  23. checking how to run the C preprocessor... gcc -E
  24. checking whether gcc needs -traditional... no
  25. checking whether gcc understands -c and -o together... yes
  26. checking for ldconfig... /usr/bin/ldconfig
  27. checking if you want to ensure bool is consistent with C++... yes
  28. checking for g++... g++
  29. checking whether we are using the GNU C++ compiler... yes
  30. checking whether g++ accepts -g... yes
  31. checking if g++ works... yes
  32. checking for g++... /usr/bin/g++
  33. checking version of /usr/bin/g++... 8.2.1
  34. checking if you want to build C++ binding and demo... yes
  35. checking if you want to build with Ada95... no
  36. checking if you want to install terminal database... yes
  37. checking if you want to install manpages... yes
  38. checking if you want to build programs such as tic... yes
  39. checking if you want to build test-programs... yes
  40. checking if you wish to install curses.h... yes
  41. checking for mawk... no
  42. checking for gawk... gawk
  43. checking for egrep... (cached) grep -E
  44. checking for a BSD compatible install... /usr/bin/install -c
  45. checking for lint... no
  46. checking for cppcheck... no
  47. checking for splint... no
  48. checking whether ln -s works... yes
  49. checking if ln -s -f options work... yes
  50. checking for long file names... yes
  51. checking if you want to use pkg-config... yes
  52. checking for pkg-config... /usr/bin/pkg-config
  53. checking for /usr/bin/pkg-config library directory... checking done... /usr/share/pkgconfig
  54. checking if we should install .pc files for /usr/bin/pkg-config... no
  55. checking if we should assume mixed-case filenames... auto
  56. checking if filesystem supports mixed-case filenames... yes
  57. checking whether make sets ${MAKE}... yes
  58. checking for exctags... no
  59. checking for ctags... no
  60. checking for exetags... no
  61. checking for etags... etags
  62. checking for ctags... no
  63. checking for etags... yes
  64. checking for makeflags variable...
  65. checking for ranlib... ranlib
  66. checking for ld... ld
  67. checking for ar... ar
  68. checking for nm... nm
  69. checking for ar... (cached) ar
  70. checking for options to update archives... -curvU
  71. checking if you have specified an install-prefix...
  72. checking if libtool -version-number should be used... yes
  73. checking if you want to build libraries with libtool... no
  74. checking if you want to build shared libraries... yes
  75. checking if you want to build static libraries... yes
  76. checking if you want to build debug libraries... no
  77. checking if you want to build profiling libraries... no
  78. checking if you want to build C++ shared libraries... yes
  79. checking for specified models...  shared normal
  80. checking for default model... shared
  81. checking if you want to have a library-prefix... auto
  82. checking for PATH separator... :
  83. checking if you want to build a separate terminfo library... no
  84. checking if you want to build a separate tic library... no
  85. checking if you want to link with the GPM mouse library... maybe
  86. checking for gpm.h... yes
  87. checking for Gpm_Open in -lgpm... yes
  88. checking if you want to load GPM dynamically... yes
  89. checking for dlsym... no
  90. checking for dlsym in -ldl... yes
  91. checking whether able to link to dl*() functions... ok
  92. checking for soname of gpm library... libgpm.so.2
  93. checking for Gpm_Wgetch in -lgpm... yes
  94. checking if GPM is weakly bound to curses library... unknown
  95. configure: WARNING: GPM library is already linked with curses - read the FAQ
  96. checking for default loader flags...
  97. checking if rpath option should be used... no
  98. checking if shared libraries should be relinked during install... yes
  99. checking for an rpath option... -Wl,-rpath,
  100. checking if release/abi version should be used for shared libs... auto
  101. checking which gcc option to use... -fPIC
  102. checking if current CFLAGS link properly... yes
  103. checking if versioned-symbols file should be used... no
  104. checking if you want to disable library suffixes... no
  105. checking if rpath-hack should be disabled... no
  106. checking for updated LDFLAGS... maybe
  107. checking for ldd... ldd
  108. checking if you wish to append extra suffix to header/library paths...
  109. checking if you wish to install ncurses overwriting curses... yes
  110. checking if external terminfo-database is used... yes
  111. checking which terminfo source-file will be installed... ${top_srcdir}/misc/terminfo.src
  112. checking whether to use hashed database instead of directory/tree... no
  113. checking for list of fallback descriptions...
  114. checking if you want modern xterm or antique... xterm-new
  115. checking if xterm backspace sends BS or DEL... BS
  116. checking for list of terminfo directories... /usr/share/terminfo
  117. checking for default terminfo directory... /usr/share/terminfo
  118. checking if big-core option selected... yes
  119. checking if big-strings option selected... yes
  120. checking if you want termcap-fallback support... no
  121. checking if ~/.terminfo is wanted... yes
  122. checking if you want to use restricted environment when running as root... yes
  123. checking for unistd.h... yes
  124. checking for remove... yes
  125. checking for unlink... yes
  126. checking if link/symlink functions work...  link symlink
  127. checking if tic should use symbolic links... no
  128. checking if tic should use hard links... yes
  129. checking if you want broken-linker support code... no
  130. checking if tputs should process BSD-style prefix padding... no
  131. checking if we must define _GNU_SOURCE... yes
  132. checking if we should also define _DEFAULT_SOURCE... yes
  133. checking if _XOPEN_SOURCE really is set... yes
  134. checking if SIGWINCH is defined... yes
  135. checking for nl_langinfo and CODESET... yes
  136. checking if you want wide-character code... yes
  137. checking for wchar.h... yes
  138. checking for wctype.h... yes
  139. checking if wchar.h can be used as is... yes
  140. checking if wcwidth agrees graphics are single-width... yes
  141. checking for putwc... yes
  142. checking for btowc... yes
  143. checking for wctob... yes
  144. checking for mbtowc... yes
  145. checking for wctomb... yes
  146. checking for mblen... yes
  147. checking for mbrlen... yes
  148. checking for mbrtowc... yes
  149. checking for wcsrtombs... yes
  150. checking for mbsrtowcs... yes
  151. checking for wcstombs... yes
  152. checking for mbstowcs... yes
  153. checking if we must include wchar.h to declare mbstate_t... yes
  154. checking if we must include wchar.h to declare wchar_t... no
  155. checking if we must include wchar.h to declare wint_t... yes
  156. checking whether to enable _LP64 definition in curses.h... no
  157. checking for special C compiler options needed for large files... no
  158. checking for _FILE_OFFSET_BITS value needed for large files... no
  159. checking for _LARGE_FILES value needed for large files... no
  160. checking for _LARGEFILE_SOURCE value needed for large files... no
  161. checking for fseeko... yes
  162. checking whether to use struct dirent64... no
  163. checking if you want tparm not to use X/Open fixed-parameter list... yes
  164. checking if you want to suppress wattr* macros to help with ncurses5/ncurses6 transition... no
  165. checking for X11 rgb file... ${exec_prefix}/lib/X11/rgb.txt
  166. checking for type of bool... auto
  167. checking for alternate terminal capabilities file... Caps
  168. checking for type of chtype... auto
  169. checking for type of ospeed... short
  170. checking for type of mmask_t... auto
  171. checking for size CCHARW_MAX... 5
  172. checking for type of tparm args... long
  173. checking if RCS identifiers should be compiled-in... no
  174. checking format of man-pages...  gzip
  175. checking for manpage renaming... no
  176. checking if manpage aliases will be installed... yes
  177. checking if manpage symlinks should be used... yes
  178. checking for manpage tbl... no
  179. checking if you want to build with function extensions... yes
  180. checking if you want to build with SCREEN extensions... no
  181. checking if you want to build with terminal-driver... no
  182. checking for extended use of const keyword... no
  183. checking if you want to use extended colors... no
  184. checking if you want to use extended mouse encoding... no
  185. checking if you want to use extended putwin/screendump... no
  186. checking if you want $NCURSES_NO_PADDING code... yes
  187. checking for ANSI C header files... yes
  188. checking for sys/types.h... yes
  189. checking for sys/stat.h... yes
  190. checking for stdlib.h... yes
  191. checking for string.h... yes
  192. checking for memory.h... yes
  193. checking for strings.h... yes
  194. checking for inttypes.h... yes
  195. checking for stdint.h... yes
  196. checking for unistd.h... (cached) yes
  197. checking for signed char... yes
  198. checking size of signed char... 1
  199. checking if you want to use signed Boolean array in term.h... no
  200. checking if you want SIGWINCH handler... yes
  201. checking if you want user-definable terminal capabilities like termcap... yes
  202. checking if you want to link with the pthread library... no
  203. checking if you want reentrant code... no
  204. checking if you want opaque curses-library structures... no
  205. checking if you want opaque form-library structures... no
  206. checking if you want opaque menu-library structures... no
  207. checking if you want opaque panel-library structures... no
  208. checking if you want all development code... no
  209. checking if you want hard-tabs code... no
  210. checking if you want limited support for xmc... no
  211. checking if you do not want to assume colors are white-on-black... yes
  212. checking if you want hashmap scrolling-optimization code... yes
  213. checking if you want colorfgbg code... no
  214. checking if you want interop bindings... no
  215. checking if you want experimental safe-sprintf code... no
  216. checking if you want wgetch-events code... no
  217. checking if you want to see long compiling messages... yes
  218. checking if you want to install stripped executables... yes
  219. checking if install needs to be told about ownership... no
  220. checking if you want to see compiler warnings...
  221. configure: checking for gcc __attribute__ directives...
  222. ... scanf
  223. ... printf
  224. ... unused
  225. ... noreturn
  226. checking if you want to work around bogus compiler/loader warnings... no
  227. checking if you want to enable runtime assertions... no
  228. checking if you want to use dmalloc for testing... no
  229. checking if you want to use dbmalloc for testing... no
  230. checking if you want to use valgrind for testing... no
  231. checking if you want to perform memory-leak testing... no
  232. checking whether to add trace feature to all models... no
  233. checking if we want to use GNAT projects... yes
  234. checking for gettimeofday... yes
  235. checking if -lm needed for math functions... yes
  236. checking for ANSI C header files... (cached) yes
  237. checking for dirent.h that defines DIR... yes
  238. checking for opendir in -ldir... no
  239. checking whether time.h and sys/time.h may both be included... yes
  240. checking for regcomp... yes
  241. checking for regular-expression headers... regex.h
  242. checking for fcntl.h... yes
  243. checking for getopt.h... yes
  244. checking for limits.h... yes
  245. checking for locale.h... yes
  246. checking for math.h... yes
  247. checking for poll.h... yes
  248. checking for sys/bsdtypes.h... no
  249. checking for sys/ioctl.h... yes
  250. checking for sys/param.h... yes
  251. checking for sys/poll.h... yes
  252. checking for sys/select.h... yes
  253. checking for sys/time.h... yes
  254. checking for sys/times.h... yes
  255. checking for ttyent.h... yes
  256. checking for unistd.h... (cached) yes
  257. checking for wctype.h... (cached) yes
  258. checking for unistd.h... (cached) yes
  259. checking for getopt.h... (cached) yes
  260. checking for header declaring getopt variables... unistd.h
  261. checking if sys/time.h works with sys/select.h... yes
  262. checking for an ANSI C-conforming const... yes
  263. checking for inline... inline
  264. checking if gcc supports options to tune inlining... yes
  265. checking for signal global datatype... volatile sig_atomic_t
  266. checking for type of chtype... int
  267. checking if unsigned literals are legal... yes
  268. checking if external errno is declared... yes
  269. checking if external errno exists... no
  270. checking if data-only library module links... yes
  271. checking for getcwd... yes
  272. checking for getegid... yes
  273. checking for geteuid... yes
  274. checking for getopt... yes
  275. checking for getttynam... yes
  276. checking for issetugid... no
  277. checking for poll... yes
  278. checking for putenv... yes
  279. checking for remove... (cached) yes
  280. checking for select... yes
  281. checking for setbuf... yes
  282. checking for setbuffer... yes
  283. checking for setenv... yes
  284. checking for setvbuf... yes
  285. checking for sigaction... yes
  286. checking for sigvec... no
  287. checking for strdup... yes
  288. checking for strstr... yes
  289. checking for tcgetpgrp... yes
  290. checking for tdestroy... yes
  291. checking for times... yes
  292. checking for tsearch... yes
  293. checking for vsnprintf... yes
  294. checking for isascii... yes
  295. checking whether sigaction needs _POSIX_SOURCE... no
  296. checking if nanosleep really works... yes
  297. checking for termio.h... yes
  298. checking for termios.h... yes
  299. checking for unistd.h... (cached) yes
  300. checking whether termios.h needs _POSIX_SOURCE... no
  301. checking for tcgetattr... yes
  302. checking for vsscanf function or workaround... vsscanf
  303. checking for unistd.h... (cached) yes
  304. checking for working mkstemp... yes
  305. checking whether setvbuf arguments are reversed... no
  306. checking for intptr_t... yes
  307. checking for ssize_t... yes
  308. checking for type sigaction_t... no
  309. checking declaration of size-change... yes
  310. checking for memmove... yes
  311. checking if poll really works... yes
  312. checking for va_copy... yes
  313. checking for __va_copy... yes
  314. checking for pid_t... yes
  315. checking for unistd.h... (cached) yes
  316. checking for vfork.h... no
  317. checking for fork... yes
  318. checking for vfork... yes
  319. checking for working fork... (cached) yes
  320. checking for working vfork... (cached) yes
  321. checking for openpty in -lutil... yes
  322. checking for openpty header... pty.h
  323. checking if we should include stdbool.h... yes
  324. checking for builtin bool type... no
  325. checking if we already have C++ library... yes
  326. checking whether /usr/bin/g++ understands -c and -o together... yes
  327. checking how to run the C++ preprocessor... /usr/bin/g++ -E
  328. checking for typeinfo... yes
  329. checking for iostream... yes
  330. checking if iostream uses std-namespace... yes
  331. checking if we should include stdbool.h... (cached) yes
  332. checking for builtin bool type... yes
  333. checking for size of bool... unsigned char
  334. checking for special defines needed for etip.h... none
  335. checking if /usr/bin/g++ accepts parameter initialization... no
  336. checking if /usr/bin/g++ accepts static_cast... yes
  337. checking for wchar_t... yes
  338. checking size of wchar_t... 4
  339. checking for library subsets... ticlib+termlib+ext_tinfo+base+widechar+ext_funcs
  340. checking default library suffix... w
  341. checking default library-dependency suffix... w.so
  342. checking default object directory... obj_s
  343. checking c++ library-dependency suffix... w.so
  344. checking where we will install curses.h... ${prefix}/include
  345. checking for src modules... ncurses progs panel menu form
  346. checking for tic... /usr/bin/tic
  347. checking for defines to add to ncursesw5-config script...  -D_GNU_SOURCE -D_DEFAULT_SOURCE
  348. package: ncursesw
  349. configure: creating ./config.status
  350. config.status: creating include/MKterm.h.awk
  351. config.status: creating include/curses.head
  352. config.status: creating include/ncurses_dll.h
  353. config.status: creating include/termcap.h
  354. config.status: creating include/unctrl.h
  355. config.status: creating man/Makefile
  356. config.status: creating include/Makefile
  357. config.status: creating ncurses/Makefile
  358. config.status: creating progs/Makefile
  359. config.status: creating panel/Makefile
  360. config.status: creating menu/Makefile
  361. config.status: creating form/Makefile
  362. config.status: creating test/Makefile
  363. config.status: creating misc/Makefile
  364. config.status: creating c++/Makefile
  365. config.status: creating misc/run_tic.sh
  366. config.status: creating misc/ncurses-config
  367. config.status: creating man/ncursesw5-config.1
  368. config.status: creating Makefile
  369. config.status: creating include/ncurses_cfg.h
  370. Appending rules for shared model (ncurses: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  371. Appending rules for normal model (ncurses: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  372. Appending rules for shared model (progs: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  373. Appending rules for normal model (progs: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  374. Appending rules for shared model (panel: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  375. Appending rules for normal model (panel: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  376. Appending rules for shared model (menu: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  377. Appending rules for normal model (menu: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  378. Appending rules for shared model (form: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  379. Appending rules for normal model (form: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  380. Appending rules for shared model (test: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  381. Appending rules for normal model (test: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  382. Appending rules for shared model (c++: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  383. Appending rules for normal model (c++: ticlib+termlib+ext_tinfo+base+widechar+ext_funcs)
  384. creating headers.sh
  385.  
  386. ** Configuration summary for NCURSES 6.1 20180127:
  387.  
  388.        extended funcs: yes
  389.        xterm terminfo: xterm-new
  390.  
  391.         bin directory: /usr/bin
  392.         lib directory: /usr/lib
  393.     include directory: /usr/include
  394.         man directory: /usr/share/man
  395.    terminfo directory: /usr/share/terminfo
  396.  
  397. cd man && make DESTDIR="" RPATH_LIST="/usr/lib" all
  398. make[1]: Entering directory '/tmp/makepkg-kaslu/ncurses5-compat-libs/src/ncurses-6.1/man'
  399. /bin/sh ./MKterminfo.sh ./terminfo.head ./../include/Caps ./terminfo.tail >terminfo.5
  400. make[1]: Leaving directory '/tmp/makepkg-kaslu/ncurses5-compat-libs/src/ncurses-6.1/man'
  401. cd include && make DESTDIR="" RPATH_LIST="/usr/lib" all
  402. make[1]: Entering directory '/tmp/makepkg-kaslu/ncurses5-compat-libs/src/ncurses-6.1/include'
  403. cat curses.head >curses.h
  404. /bin/sh ./MKhashsize.sh ./Caps >hashsize.h
  405. AWK=gawk /bin/sh ./MKncurses_def.sh ./ncurses_defs >ncurses_def.h
  406. AWK=gawk /bin/sh ./MKkey_defs.sh ./Caps >>curses.h
  407. AWK=gawk /bin/sh ./MKparametrized.sh ./Caps >parametrized.h
  408. touch config.h
  409. gawk -f MKterm.h.awk ./Caps > term.h
  410. /bin/sh ./edit_cfg.sh ../include/ncurses_cfg.h term.h
  411. ** edit: HAVE_TCGETATTR 1
  412. ** edit: HAVE_TERMIOS_H 1
  413. ** edit: HAVE_TERMIO_H 1
  414. ** edit: BROKEN_LINKER 0
  415. /bin/sh -c 'if test "cchar_t" = "cchar_t" ; then cat ./curses.wide >>curses.h ; fi'
  416. cat ./curses.tail >>curses.h
  417. make[1]: Leaving directory '/tmp/makepkg-kaslu/ncurses5-compat-libs/src/ncurses-6.1/include'
  418. cd ncurses && make DESTDIR="" RPATH_LIST="/usr/lib" all
  419. make[1]: Entering directory '/tmp/makepkg-kaslu/ncurses5-compat-libs/src/ncurses-6.1/ncurses'
  420. gawk -f ./tinfo/MKcodes.awk bigstrings=1 ./../include/Caps >codes.c
  421. gcc -o make_hash -DHAVE_CONFIG_H -DUSE_BUILD_CC -I../ncurses -I. -I../include -I./../include -DHAVE_CONFIG_H -I../ncurses -I. -I../include -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -D_DEFAULT_SOURCE -DNDEBUG  -march=native -O2 -pipe -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 --param max-inline-insns-single=1200 ./tinfo/make_hash.c -Wl,-O1,--sort-common,--as-needed,-z,relro    
  422. /bin/sh -e ./tty/MKexpanded.sh "gcc -E" -DHAVE_CONFIG_H -I../ncurses -I. -I../include -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -D_DEFAULT_SOURCE -DNDEBUG > expanded.c
  423. /bin/sh -e ./tinfo/MKfallback.sh /usr/share/terminfo ../misc/terminfo.src /usr/bin/tic  >fallback.c
  424. /bin/sh -e ./base/MKlib_gen.sh "gcc -E -DHAVE_CONFIG_H -I../ncurses -I. -I../include -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -D_DEFAULT_SOURCE -DNDEBUG" "gawk" generated <../include/curses.h >lib_gen.c
  425. AWK=gawk /bin/sh ./tinfo/MKkeys_list.sh ../include/Caps | LC_ALL=C sort >keys.list
  426. .. adding -P option to work around gcc 8.2.1
  427. /bin/sh -e ./base/MKlib_gen.sh "gcc -E -DHAVE_CONFIG_H -I../ncurses -I. -I../include -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -D_DEFAULT_SOURCE -DNDEBUG" "gawk" implemented <../include/curses.h >link_test.c
  428. .. adding -P option to work around gcc 8.2.1
  429. gawk -f ./tinfo/MKnames.awk bigstrings=1 ./../include/Caps >names.c
  430. echo | gawk -f ./base/MKunctrl.awk bigstrings=1 >unctrl.c
  431.  
  432. # many things
  433.  
  434. building 'neuron.rxd.geometry3d.graphicsPrimitives' extension
  435. creating share
  436. creating share/lib
  437. creating share/lib/python
  438. creating share/lib/python/neuron
  439. creating share/lib/python/neuron/rxd
  440. creating share/lib/python/neuron/rxd/geometry3d
  441. mpicc -DNDEBUG -g -fwrapv -O3 -Wall -march=native -O2 -pipe -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -fPIC -I../.././share/lib/python/neuron/rxd/geometry3d -I. -I/usr/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c ../../share/lib/python/neuron/rxd/geometry3d/graphicsPrimitives.cpp -o build/temp.linux-x86_64-3.7/../../share/lib/python/neuron/rxd/geometry3d/graphicsPrimitives.o
  442. mpic++ -pthread -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -flto=4 -fuse-linker-plugin -ffat-lto-objects -flto-partition=none -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,-O1,--sort-common,--as-needed,-z,relro -march=native -O2 -pipe -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.7/../../share/lib/python/neuron/rxd/geometry3d/graphicsPrimitives.o -L/usr/lib -lpython3.7m -o build/lib.linux-x86_64-3.7/neuron/rxd/geometry3d/graphicsPrimitives.cpython-37m-x86_64-linux-gnu.so
  443. building 'neuron.rxd.geometry3d.ctng' extension
  444. mpicc -DNDEBUG -g -fwrapv -O3 -Wall -march=native -O2 -pipe -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -D_FORTIFY_SOURCE=2 -fPIC -I../.././share/lib/python/neuron/rxd/geometry3d -I. -I/usr/lib/python3.7/site-packages/numpy/core/include -I/usr/include/python3.7m -c ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp -o build/temp.linux-x86_64-3.7/../../share/lib/python/neuron/rxd/geometry3d/ctng.o
  445. In file included from /usr/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821,
  446.                  from /usr/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
  447.                  from /usr/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
  448.                  from ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:243:
  449. /usr/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
  450.  #warning "Using deprecated NumPy API, disable it by " \
  451.   ^~~~~~~
  452. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp: In function ‘void __Pyx_ExceptionSwap(PyObject**, PyObject**, PyObject**):
  453. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:23531:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
  454.      tmp_type = tstate->exc_type;
  455.                         ^~~~~~~~
  456.                         curexc_type
  457. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:23532:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
  458.      tmp_value = tstate->exc_value;
  459.                          ^~~~~~~~~
  460.                          curexc_value
  461. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:23533:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
  462.      tmp_tb = tstate->exc_traceback;
  463.                       ^~~~~~~~~~~~~
  464.                       curexc_traceback
  465. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:23534:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
  466.      tstate->exc_type = *type;
  467.              ^~~~~~~~
  468.              curexc_type
  469. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:23535:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
  470.      tstate->exc_value = *value;
  471.              ^~~~~~~~~
  472.              curexc_value
  473. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:23536:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
  474.      tstate->exc_traceback = *tb;
  475.              ^~~~~~~~~~~~~
  476.              curexc_traceback
  477. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp: At global scope:
  478. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:3651:15: warning: ‘double __pyx_f_6neuron_3rxd_10geometry3d_4ctng_qsolve(double, double, double)’ defined but not used [-Wunused-function]
  479.  static double __pyx_f_6neuron_3rxd_10geometry3d_4ctng_qsolve(double __pyx_v_a, double __pyx_v_b, double __pyx_v_c) {
  480.                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  481. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:3537:18: warning: ‘PyObject* __pyx_f_6neuron_3rxd_10geometry3d_4ctng_convert2dto3d(double, double, double, double, double, PyArrayObject*, PyArrayObject*)’ defined but not used [-Wunused-function]
  482.  static PyObject *__pyx_f_6neuron_3rxd_10geometry3d_4ctng_convert2dto3d(double __pyx_v_ptx, double __pyx_v_pty, double __pyx_v_x1, double __pyx_v_y1, double __pyx_v_z1, PyArrayObject *__pyx_v_axis, PyArrayObject *__pyx_v_radial_vec) {
  483.                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  484. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:2116:18: warning: ‘PyObject* __pyx_f_6neuron_3rxd_10geometry3d_4ctng_closest_pt(PyObject*, PyObject*, PyObject*)’ defined but not used [-Wunused-function]
  485.  static PyObject *__pyx_f_6neuron_3rxd_10geometry3d_4ctng_closest_pt(PyObject *__pyx_v_pt, PyObject *__pyx_v_pts, PyObject *__pyx_v_z2) {
  486.                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  487. ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:2041:18: warning: ‘PyObject* __pyx_f_6neuron_3rxd_10geometry3d_4ctng_convert3dto2d(double, double, double, double, double, double, double, double, double, double, double, double)’ defined but not used [-Wunused-function]
  488.  static PyObject *__pyx_f_6neuron_3rxd_10geometry3d_4ctng_convert3dto2d(double __pyx_v_x, double __pyx_v_y, double __pyx_v_z, double __pyx_v_px, double __pyx_v_py, double __pyx_v_pz, double __pyx_v_xx, double __pyx_v_xy, double __pyx_v_xz, double __pyx_v_yx, double __pyx_v_yy, double __pyx_v_yz) {
  489.                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  490. In file included from /usr/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:27,
  491.                  from /usr/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
  492.                  from ../../share/lib/python/neuron/rxd/geometry3d/ctng.cpp:243:
  493. /usr/lib/python3.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘int _import_array()’ defined but not used [-Wunused-function]
  494.  _import_array(void)
  495.  ^~~~~~~~~~~~~
  496. error: command 'mpicc' failed with exit status 1
  497. make[3]: *** [Makefile:1099: install-exec-hook] Error 1
  498. make[3]: Leaving directory '/tmp/makepkg-kaslu/neuron/src/nrn-7.5'
  499. make[2]: *** [Makefile:1008: install-exec-am] Error 2
  500. make[2]: Leaving directory '/tmp/makepkg-kaslu/neuron/src/nrn-7.5'
  501. make[1]: *** [Makefile:953: install-am] Error 2
  502. make[1]: Leaving directory '/tmp/makepkg-kaslu/neuron/src/nrn-7.5'
  503. make: *** [Makefile:653: install-recursive] Error 1
  504. ==> ERROR: A failure occurred in package().
  505.     Aborting...
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