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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1845541588
- read 1073741824 bytes
- read 2057898697 bytes
- packed geno read OK
- end of inpack
- left pops:
- SPGT
- InPe
- Kazakhstan_MLBA_Zevakinskiy
- Uzbekistan_BA_Dzharkutan1
- right pops:
- Cameroon_SMA.DG
- EEHG
- WSHG
- PPN
- WEHG
- Anatolia_N
- Iran_GanjDareh_N
- Russia_UstBelaya_Angara
- ONG.SG
- Botai
- 0 SPGT 78
- 1 InPe 10
- 2 Kazakhstan_MLBA_Zevakinskiy 1
- 3 Uzbekistan_BA_Dzharkutan1 7
- 4 Cameroon_SMA.DG 1
- 5 EEHG 5
- 6 WSHG 3
- 7 PPN 11
- 8 WEHG 33
- 9 Anatolia_N 22
- 10 Iran_GanjDareh_N 8
- 11 Russia_UstBelaya_Angara 8
- 12 ONG.SG 6
- 13 Botai 2
- jackknife block size: 0.050
- snps: 1150507 indivs: 195
- number of blocks for block jackknife: 713
- ## ncols: 1150507
- coverage: SPGT 1133349
- coverage: InPe 891428
- coverage: Kazakhstan_MLBA_Zevakinskiy 711062
- coverage: Uzbekistan_BA_Dzharkutan1 1054006
- coverage: Cameroon_SMA.DG 1140138
- coverage: EEHG 1052093
- coverage: WSHG 858019
- coverage: PPN 847771
- coverage: WEHG 1140599
- coverage: Anatolia_N 1139031
- coverage: Iran_GanjDareh_N 1057358
- coverage: Russia_UstBelaya_Angara 1072574
- coverage: ONG.SG 1143397
- coverage: Botai 926654
- dof (jackknife): 621.474
- numsnps used: 1150507
- codimension 1
- f4info:
- f4rank: 2 dof: 7 chisq: 7.602 tail: 0.368976799 dofdiff: 9 chisqdiff: -7.602 taildiff: 1
- B:
- scale 1.000 1.000
- EEHG 1.374 0.027
- WSHG 1.339 -0.298
- PPN 0.621 1.171
- WEHG 1.460 0.220
- Anatolia_N 0.756 1.196
- Iran_GanjDareh_N -0.245 1.843
- Russia_UstBelaya_Angara 0.723 -1.095
- ONG.SG -0.079 -1.154
- Botai 1.280 -0.364
- A:
- scale 518.084 1146.221
- InPe -0.704 -0.739
- Kazakhstan_MLBA_Zevakinskiy 1.582 -0.244
- Uzbekistan_BA_Dzharkutan1 -0.047 1.547
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 7 chisqdiff: 7.602 taildiff: 0.368976799
- B:
- scale 729.908 306.406 730.730
- EEHG -1.271 1.359 -0.012
- WSHG -1.029 1.381 -0.307
- PPN -1.042 0.562 1.158
- WEHG -1.427 1.410 0.165
- Anatolia_N -1.248 0.666 1.144
- Iran_GanjDareh_N -0.429 -0.255 1.925
- Russia_UstBelaya_Angara -0.010 0.874 -1.069
- ONG.SG 0.707 0.067 -1.104
- Botai -0.981 1.290 -0.403
- A:
- scale 1.732 1.732 1.732
- InPe 1.732 0.000 0.000
- Kazakhstan_MLBA_Zevakinskiy 0.000 1.732 0.000
- Uzbekistan_BA_Dzharkutan1 0.000 0.000 1.732
- best coefficients: 0.497 0.229 0.274
- Jackknife mean: 0.497206342 0.229024378 0.273769280
- std. errors: 0.020 0.013 0.018
- error covariance (* 1,000,000)
- 387 -118 -269
- -118 175 -57
- -269 -57 325
- summ: SPGT 3 0.368977 0.497 0.229 0.274 387 -118 -269 175 -57 ...
- 325
- fixed pat wt dof chisq tail prob
- 000 0 7 7.602 0.368977 0.497 0.229 0.274
- 001 1 8 149.977 1.98275e-28 0.707 0.293 0.000
- 010 1 8 279.392 0 0.735 0.000 0.265
- 100 1 8 389.359 0 0.000 0.490 0.510
- 011 2 9 368.114 0 1.000 0.000 0.000
- 101 2 9 544.416 0 0.000 1.000 0.000
- 110 2 9 1076.876 0 0.000 0.000 1.000
- best pat: 000 0.368977 - -
- best pat: 001 1.98275e-28 chi(nested): 142.375 p-value for nested model: 8.05312e-33
- best pat: 011 8.61144e-74 chi(nested): 218.137 p-value for nested model: 2.30544e-49
- coeffs: 0.497 0.229 0.274
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: InPe EEHG -0.001742 -8.696114
- details: Kazakhstan_MLBA_Zevakinskiy EEHG 0.004437 13.434037
- details: Uzbekistan_BA_Dzharkutan1 EEHG -0.000016 -0.092847
- dscore: EEHG f4: 0.000147 Z: 1.054450
- details: InPe WSHG -0.001410 -6.320875
- details: Kazakhstan_MLBA_Zevakinskiy WSHG 0.004507 12.146950
- details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000420 -2.429365
- dscore: WSHG f4: 0.000217 Z: 1.466151
- details: InPe PPN -0.001427 -7.227235
- details: Kazakhstan_MLBA_Zevakinskiy PPN 0.001835 5.839296
- details: Uzbekistan_BA_Dzharkutan1 PPN 0.001584 9.978914
- dscore: PPN f4: 0.000144 Z: 1.049382
- details: InPe WEHG -0.001955 -10.043712
- details: Kazakhstan_MLBA_Zevakinskiy WEHG 0.004601 14.398607
- details: Uzbekistan_BA_Dzharkutan1 WEHG 0.000226 1.459526
- dscore: WEHG f4: 0.000145 Z: 1.066399
- details: InPe Anatolia_N -0.001710 -9.510263
- details: Kazakhstan_MLBA_Zevakinskiy Anatolia_N 0.002175 7.682190
- details: Uzbekistan_BA_Dzharkutan1 Anatolia_N 0.001566 10.973552
- dscore: Anatolia_N f4: 0.000077 Z: 0.615969
- details: InPe Iran_GanjDareh_N -0.000588 -3.095321
- details: Kazakhstan_MLBA_Zevakinskiy Iran_GanjDareh_N -0.000832 -2.944927
- details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.002634 17.149262
- dscore: Iran_GanjDareh_N f4: 0.000237 Z: 1.845500
- details: InPe Russia_UstBelaya_Angara -0.000014 -0.071547
- details: Kazakhstan_MLBA_Zevakinskiy Russia_UstBelaya_Angara 0.002853 9.079692
- details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.001463 -9.527237
- dscore: Russia_UstBelaya_Angara f4: 0.000247 Z: 1.908484
- details: InPe ONG.SG 0.000969 4.947067
- details: Kazakhstan_MLBA_Zevakinskiy ONG.SG 0.000220 0.720698
- details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.001511 -9.384910
- dscore: ONG.SG f4: 0.000119 Z: 0.896879
- details: InPe Botai -0.001344 -6.164099
- details: Kazakhstan_MLBA_Zevakinskiy Botai 0.004210 12.262099
- details: Uzbekistan_BA_Dzharkutan1 Botai -0.000551 -3.157557
- dscore: Botai f4: 0.000146 Z: 0.997400
- gendstat: Cameroon_SMA.DG EEHG 1.054
- gendstat: Cameroon_SMA.DG WSHG 1.466
- gendstat: Cameroon_SMA.DG PPN 1.049
- gendstat: Cameroon_SMA.DG WEHG 1.066
- gendstat: Cameroon_SMA.DG Anatolia_N 0.616
- gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 1.846
- gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 1.908
- gendstat: Cameroon_SMA.DG ONG.SG 0.897
- gendstat: Cameroon_SMA.DG Botai 0.997
- gendstat: EEHG WSHG 0.577
- gendstat: EEHG PPN -0.019
- gendstat: EEHG WEHG -0.020
- gendstat: EEHG Anatolia_N -0.645
- gendstat: EEHG Iran_GanjDareh_N 0.745
- gendstat: EEHG Russia_UstBelaya_Angara 0.830
- gendstat: EEHG ONG.SG -0.198
- gendstat: EEHG Botai -0.004
- gendstat: WSHG PPN -0.504
- gendstat: WSHG WEHG -0.601
- gendstat: WSHG Anatolia_N -1.118
- gendstat: WSHG Iran_GanjDareh_N 0.152
- gendstat: WSHG Russia_UstBelaya_Angara 0.233
- gendstat: WSHG ONG.SG -0.675
- gendstat: WSHG Botai -0.588
- gendstat: PPN WEHG 0.004
- gendstat: PPN Anatolia_N -0.742
- gendstat: PPN Iran_GanjDareh_N 0.759
- gendstat: PPN Russia_UstBelaya_Angara 0.812
- gendstat: PPN ONG.SG -0.185
- gendstat: PPN Botai 0.014
- gendstat: WEHG Anatolia_N -0.854
- gendstat: WEHG Iran_GanjDareh_N 0.832
- gendstat: WEHG Russia_UstBelaya_Angara 0.887
- gendstat: WEHG ONG.SG -0.197
- gendstat: WEHG Botai 0.012
- gendstat: Anatolia_N Iran_GanjDareh_N 1.626
- gendstat: Anatolia_N Russia_UstBelaya_Angara 1.526
- gendstat: Anatolia_N ONG.SG 0.353
- gendstat: Anatolia_N Botai 0.551
- gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.081
- gendstat: Iran_GanjDareh_N ONG.SG -0.933
- gendstat: Iran_GanjDareh_N Botai -0.674
- gendstat: Russia_UstBelaya_Angara ONG.SG -1.203
- gendstat: Russia_UstBelaya_Angara Botai -0.847
- gendstat: ONG.SG Botai 0.193
- ##end of qpAdm: 361.339 seconds cpu 1257.619 Mbytes in use
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