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misnomer001

spgt_o steppe_en right pop

misnomer001
Mar 17th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1637526923
  4. read 1073741824 bytes
  5. read 2057898697 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. SPGT_o
  11. InPe_Native
  12. Uzbekistan_BA_Dzharkutan1
  13. Kazakhstan_MLBA_Dali
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. EEHG
  18. WSHG
  19. PPN
  20. WEHG
  21. Anatolia_N
  22. Iran_GanjDareh_N
  23. Russia_Steppe_Eneolithic
  24. Russia_UstBelaya_Angara
  25. ONG.SG
  26. Botai
  27.  
  28. 0 SPGT_o 2
  29. 1 InPe_Native 4
  30. 2 Uzbekistan_BA_Dzharkutan1 7
  31. 3 Kazakhstan_MLBA_Dali 3
  32. 4 Cameroon_SMA.DG 1
  33. 5 EEHG 5
  34. 6 WSHG 3
  35. 7 PPN 11
  36. 8 WEHG 33
  37. 9 Anatolia_N 22
  38. 10 Iran_GanjDareh_N 8
  39. 11 Russia_Steppe_Eneolithic 3
  40. 12 Russia_UstBelaya_Angara 8
  41. 13 ONG.SG 6
  42. 14 Botai 2
  43. jackknife block size: 0.050
  44. snps: 1150506 indivs: 118
  45. number of blocks for block jackknife: 713
  46. ## ncols: 1150506
  47. coverage: SPGT_o 673520
  48. coverage: InPe_Native 841356
  49. coverage: Uzbekistan_BA_Dzharkutan1 1054006
  50. coverage: Kazakhstan_MLBA_Dali 931588
  51. coverage: Cameroon_SMA.DG 1140138
  52. coverage: EEHG 1052093
  53. coverage: WSHG 858019
  54. coverage: PPN 847771
  55. coverage: WEHG 1140599
  56. coverage: Anatolia_N 1139031
  57. coverage: Iran_GanjDareh_N 1057358
  58. coverage: Russia_Steppe_Eneolithic 1008226
  59. coverage: Russia_UstBelaya_Angara 1072574
  60. coverage: ONG.SG 1143397
  61. coverage: Botai 926654
  62. dof (jackknife): 623.226
  63. numsnps used: 1150506
  64. codimension 1
  65. f4info:
  66. f4rank: 2 dof: 8 chisq: 2.905 tail: 0.940183579 dofdiff: 10 chisqdiff: -2.905 taildiff: 1
  67. B:
  68. scale 1.000 1.000
  69. EEHG 1.424 -0.425
  70. WSHG 1.139 -0.437
  71. PPN 0.670 1.189
  72. WEHG 1.674 -0.366
  73. Anatolia_N 0.944 1.010
  74. Iran_GanjDareh_N -0.200 1.983
  75. Russia_Steppe_Eneolithic 1.016 0.517
  76. Russia_UstBelaya_Angara 0.332 -1.079
  77. ONG.SG -0.142 -1.224
  78. Botai 1.153 -0.447
  79. A:
  80. scale 548.216 1548.847
  81. InPe_Native -1.219 -0.933
  82. Uzbekistan_BA_Dzharkutan1 -0.371 1.403
  83. Kazakhstan_MLBA_Dali 1.174 -0.400
  84.  
  85.  
  86. full rank
  87. f4info:
  88. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 2.905 taildiff: 0.940183579
  89. B:
  90. scale 483.643 934.991 409.160
  91. EEHG -1.259 -0.975 1.440
  92. WSHG -0.945 -0.804 1.200
  93. PPN -0.930 0.855 0.598
  94. WEHG -1.593 -1.162 1.613
  95. Anatolia_N -1.194 0.488 0.846
  96. Iran_GanjDareh_N -0.238 2.057 -0.242
  97. Russia_Steppe_Eneolithic -1.128 0.030 0.967
  98. Russia_UstBelaya_Angara 0.152 -0.761 0.605
  99. ONG.SG 0.630 -0.733 0.125
  100. Botai -0.971 -0.856 1.199
  101. A:
  102. scale 1.732 1.732 1.732
  103. InPe_Native 1.732 0.000 0.000
  104. Uzbekistan_BA_Dzharkutan1 0.000 1.732 0.000
  105. Kazakhstan_MLBA_Dali 0.000 0.000 1.732
  106.  
  107.  
  108. best coefficients: 0.292 0.308 0.400
  109. Jackknife mean: 0.291517338 0.308358154 0.400124508
  110. std. errors: 0.047 0.052 0.031
  111.  
  112. error covariance (* 1,000,000)
  113. 2219 -1973 -246
  114. -1973 2666 -693
  115. -246 -693 939
  116.  
  117.  
  118. summ: SPGT_o 3 0.940184 0.292 0.308 0.400 2219 -1973 -246 2666 -693 ...
  119. 939
  120.  
  121. fixed pat wt dof chisq tail prob
  122. 000 0 8 2.905 0.940184 0.292 0.308 0.400
  123. 001 1 9 170.344 0 0.420 0.580 0.000
  124. 010 1 9 36.331 3.46224e-05 0.520 0.000 0.480
  125. 100 1 9 40.939 5.13078e-06 0.000 0.555 0.445
  126. 011 2 10 265.087 0 1.000 0.000 0.000
  127. 101 2 10 226.070 0 0.000 1.000 0.000
  128. 110 2 10 275.604 0 0.000 0.000 1.000
  129. best pat: 000 0.940184 - -
  130. best pat: 010 3.46224e-05 chi(nested): 33.426 p-value for nested model: 7.40109e-09
  131. best pat: 101 5.72397e-43 not nested
  132.  
  133. coeffs: 0.292 0.308 0.400
  134.  
  135. ## dscore:: f_4(Base, Fit, Rbase, right2)
  136. ## genstat:: f_4(Base, Fit, right1, right2)
  137.  
  138. details: InPe_Native EEHG -0.002604 -7.316536
  139. details: Uzbekistan_BA_Dzharkutan1 EEHG -0.001043 -3.215165
  140. details: Kazakhstan_MLBA_Dali EEHG 0.003520 9.627960
  141. dscore: EEHG f4: 0.000328 Z: 1.053676
  142.  
  143. details: InPe_Native WSHG -0.001953 -4.815361
  144. details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000859 -2.334053
  145. details: Kazakhstan_MLBA_Dali WSHG 0.002932 6.999335
  146. dscore: WSHG f4: 0.000339 Z: 0.955481
  147.  
  148. details: InPe_Native PPN -0.001923 -5.535402
  149. details: Uzbekistan_BA_Dzharkutan1 PPN 0.000914 2.798513
  150. details: Kazakhstan_MLBA_Dali PPN 0.001461 3.962379
  151. dscore: PPN f4: 0.000305 Z: 0.985791
  152.  
  153. details: InPe_Native WEHG -0.003294 -9.352670
  154. details: Uzbekistan_BA_Dzharkutan1 WEHG -0.001243 -3.889175
  155. details: Kazakhstan_MLBA_Dali WEHG 0.003941 11.004525
  156. dscore: WEHG f4: 0.000233 Z: 0.768008
  157.  
  158. details: InPe_Native Anatolia_N -0.002468 -7.987881
  159. details: Uzbekistan_BA_Dzharkutan1 Anatolia_N 0.000522 1.886081
  160. details: Kazakhstan_MLBA_Dali Anatolia_N 0.002067 6.594222
  161. dscore: Anatolia_N f4: 0.000268 Z: 1.024480
  162.  
  163. details: InPe_Native Iran_GanjDareh_N -0.000492 -1.566393
  164. details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.002200 7.579723
  165. details: Kazakhstan_MLBA_Dali Iran_GanjDareh_N -0.000591 -1.823722
  166. dscore: Iran_GanjDareh_N f4: 0.000297 Z: 1.085406
  167.  
  168. details: InPe_Native Russia_Steppe_Eneolithic -0.002332 -6.773535
  169. details: Uzbekistan_BA_Dzharkutan1 Russia_Steppe_Eneolithic 0.000032 0.100073
  170. details: Kazakhstan_MLBA_Dali Russia_Steppe_Eneolithic 0.002364 6.569539
  171. dscore: Russia_Steppe_Eneolithic f4: 0.000275 Z: 0.909116
  172.  
  173. details: InPe_Native Russia_UstBelaya_Angara 0.000315 0.965959
  174. details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.000814 -2.816345
  175. details: Kazakhstan_MLBA_Dali Russia_UstBelaya_Angara 0.001479 4.452262
  176. dscore: Russia_UstBelaya_Angara f4: 0.000433 Z: 1.548531
  177.  
  178. details: InPe_Native ONG.SG 0.001303 3.834179
  179. details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.000784 -2.659958
  180. details: Kazakhstan_MLBA_Dali ONG.SG 0.000305 0.889914
  181. dscore: ONG.SG f4: 0.000261 Z: 0.900274
  182.  
  183. details: InPe_Native Botai -0.002008 -5.228464
  184. details: Uzbekistan_BA_Dzharkutan1 Botai -0.000915 -2.714486
  185. details: Kazakhstan_MLBA_Dali Botai 0.002931 7.425423
  186. dscore: Botai f4: 0.000305 Z: 0.924123
  187.  
  188. gendstat: Cameroon_SMA.DG EEHG 1.054
  189. gendstat: Cameroon_SMA.DG WSHG 0.955
  190. gendstat: Cameroon_SMA.DG PPN 0.986
  191. gendstat: Cameroon_SMA.DG WEHG 0.768
  192. gendstat: Cameroon_SMA.DG Anatolia_N 1.024
  193. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N 1.085
  194. gendstat: Cameroon_SMA.DG Russia_Steppe_Eneolithic 0.909
  195. gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara 1.549
  196. gendstat: Cameroon_SMA.DG ONG.SG 0.900
  197. gendstat: Cameroon_SMA.DG Botai 0.924
  198. gendstat: EEHG WSHG 0.041
  199. gendstat: EEHG PPN -0.074
  200. gendstat: EEHG WEHG -0.397
  201. gendstat: EEHG Anatolia_N -0.239
  202. gendstat: EEHG Iran_GanjDareh_N -0.110
  203. gendstat: EEHG Russia_Steppe_Eneolithic -0.201
  204. gendstat: EEHG Russia_UstBelaya_Angara 0.389
  205. gendstat: EEHG ONG.SG -0.215
  206. gendstat: EEHG Botai -0.082
  207. gendstat: WSHG PPN -0.099
  208. gendstat: WSHG WEHG -0.356
  209. gendstat: WSHG Anatolia_N -0.233
  210. gendstat: WSHG Iran_GanjDareh_N -0.133
  211. gendstat: WSHG Russia_Steppe_Eneolithic -0.214
  212. gendstat: WSHG Russia_UstBelaya_Angara 0.334
  213. gendstat: WSHG ONG.SG -0.230
  214. gendstat: WSHG Botai -0.121
  215. gendstat: PPN WEHG -0.278
  216. gendstat: PPN Anatolia_N -0.188
  217. gendstat: PPN Iran_GanjDareh_N -0.027
  218. gendstat: PPN Russia_Steppe_Eneolithic -0.101
  219. gendstat: PPN Russia_UstBelaya_Angara 0.426
  220. gendstat: PPN ONG.SG -0.135
  221. gendstat: PPN Botai 0.000
  222. gendstat: WEHG Anatolia_N 0.170
  223. gendstat: WEHG Iran_GanjDareh_N 0.237
  224. gendstat: WEHG Russia_Steppe_Eneolithic 0.164
  225. gendstat: WEHG Russia_UstBelaya_Angara 0.751
  226. gendstat: WEHG ONG.SG 0.089
  227. gendstat: WEHG Botai 0.247
  228. gendstat: Anatolia_N Iran_GanjDareh_N 0.130
  229. gendstat: Anatolia_N Russia_Steppe_Eneolithic 0.030
  230. gendstat: Anatolia_N Russia_UstBelaya_Angara 0.648
  231. gendstat: Anatolia_N ONG.SG -0.025
  232. gendstat: Anatolia_N Botai 0.127
  233. gendstat: Iran_GanjDareh_N Russia_Steppe_Eneolithic -0.088
  234. gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara 0.518
  235. gendstat: Iran_GanjDareh_N ONG.SG -0.126
  236. gendstat: Iran_GanjDareh_N Botai 0.026
  237. gendstat: Russia_Steppe_Eneolithic Russia_UstBelaya_Angara 0.583
  238. gendstat: Russia_Steppe_Eneolithic ONG.SG -0.046
  239. gendstat: Russia_Steppe_Eneolithic Botai 0.103
  240. gendstat: Russia_UstBelaya_Angara ONG.SG -0.704
  241. gendstat: Russia_UstBelaya_Angara Botai -0.492
  242. gendstat: ONG.SG Botai 0.139
  243.  
  244. ##end of qpAdm: 464.081 seconds cpu 1294.438 Mbytes in use
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