Around line 44 you'll see <div class="row">

You'll need to add this on the line beneath it:
    <?php woocommerce_content(); ?>

    So now they look something like so.

    <div class="container">
            <div class="row">
    <?php woocommerce_content(); ?>
                    <?php
                            foreach(explode(",", $page_section_order) as $key) {
                                    $fn = 'synapse_' . $key;
                                    if(function_exists($fn)) {
                                            call_user_func_array($fn, array());
                                    }
                            }
                    ?>
            </div><!--end row-->
    </div><!--end container-->

    <?php get_footer(); ?>


If you don't like the way everything is pushed beneath the WooCommerce stuff, you can remove that section, so now it looks like:

    <div class="container">
            <div class="row">
    <?php woocommerce_content(); ?>
            </div><!--end row-->
    </div><!--end container-->

    <?php get_footer(); ?>