API tools faq
paste
Legend_9813

Bengal_Brahmin_Kulin

Legend_9813
Apr 19th, 2023
129
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 11.46 KB | None | 0 0
raw download clone embed print report
  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Indian.ind
  5. snpname: Indian.snp
  6. genotypename: Indian.geno
  7. popleft: left
  8. popright: right
  9. details: YES
  10. allsnps: YES
  11. inbreed: NO
  12. ## qpAdm version: 1520
  13. seed: -6346888
  14. inbreed set NO
  15. inbreed set NO
  16. tmp: /tmp/fsx.193
  17.  
  18. left pops:
  19. Brahmin_Begngal1
  20. Paniya
  21. IVC_25AASI_50IranN
  22. China_Xinjiang_Tangbalesayi_LBA_Andronovo
  23.  
  24. right pops:
  25. Mbuti.DG
  26. EHG
  27. CHG
  28. WSHG
  29. Onge.SG
  30. Turkey_N
  31. Iraq_PPNA
  32. Levant_PPN
  33. CHN_Tarim_EMBA1
  34. Iran_GanjDareh_N
  35. Mongolia_North_N
  36. Serbia_IronGates_Mesolithic
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 2 dof: 9 chisq: 7.216 tail: 0.614673274 dofdiff: 11 chisqdiff: -7.216 taildiff: 1
  41. B:
  42. scale 1.000 1.000
  43. EHG 1.256 -0.916
  44. CHG 0.955 0.848
  45. WSHG 0.967 -0.124
  46. Onge.SG -0.845 -0.585
  47. Turkey_N 1.207 -0.337
  48. Iraq_PPNA 1.020 0.829
  49. Levant_PPN 1.053 0.015
  50. CHN_Tarim_EMBA1 0.720 0.007
  51. Iran_GanjDareh_N 0.707 2.334
  52. Mongolia_North_N -0.573 -0.235
  53. Serbia_IronGates_Mesolithic 1.381 -1.666
  54. A:
  55. scale 81.127 306.055
  56. Paniya -1.144 -0.737
  57. IVC_25AASI_50IranN 0.234 1.207
  58. China_Xinjiang_Tangbalesayi_LBA_Andronovo 1.279 -1.000
  59.  
  60.  
  61. full rank
  62. f4info:
  63. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 7.216 taildiff: 0.614673274
  64. B:
  65. scale 75.564 164.974 56.764
  66. EHG -1.043 0.346 1.415
  67. CHG -1.065 1.275 0.782
  68. WSHG -0.794 0.894 1.076
  69. Onge.SG 1.158 -0.401 -0.497
  70. Turkey_N -1.119 0.611 1.235
  71. Iraq_PPNA -1.170 1.221 0.825
  72. Levant_PPN -0.910 1.019 1.124
  73. CHN_Tarim_EMBA1 -0.751 0.384 0.683
  74. Iran_GanjDareh_N -1.001 2.288 0.356
  75. Mongolia_North_N 0.860 0.066 -0.283
  76. Serbia_IronGates_Mesolithic -1.026 -0.067 1.685
  77. A:
  78. scale 1.732 1.732 1.732
  79. Paniya 1.732 0.000 0.000
  80. IVC_25AASI_50IranN 0.000 1.732 0.000
  81. China_Xinjiang_Tangbalesayi_LBA_Andronovo 0.000 0.000 1.732
  82.  
  83.  
  84. best coefficients: 0.351 0.411 0.238
  85. totmean: 0.351 0.411 0.238
  86. boot mean: 0.350 0.411 0.238
  87. std. errors: 0.036 0.056 0.034
  88.  
  89. error covariance (* 1,000,000)
  90. 1287 -1634 346
  91. -1634 3135 -1502
  92. 346 -1502 1155
  93.  
  94.  
  95. summ: Brahmin_Begngal1 3 0.614673 0.350 0.411 0.238 1287 -1634 346 3135 -1502 ...
  96. 1155
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 000 0 9 7.216 0.614673 0.351 0.411 0.238
  100. 001 1 10 54.617 3.72364e-08 0.271 0.729 0.000
  101. 010 1 10 61.243 2.10702e-09 0.560 0.000 0.440
  102. 100 1 10 91.349 2.89213e-15 0.000 0.868 0.132
  103. 011 2 11 460.261 0 1.000 0.000 0.000
  104. 101 2 11 104.372 2.42333e-17 0.000 1.000 0.000
  105. 110 2 11 545.666 0 0.000 0.000 1.000
  106. best pat: 000 0.614673 - -
  107. best pat: 001 3.72364e-08 chi(nested): 47.401 p-value for nested model: 5.78512e-12
  108. best pat: 101 2.42333e-17 chi(nested): 49.755 p-value for nested model: 1.74185e-12
  109.  
  110. coeffs: 0.351 0.411 0.238
  111.  
  112. ## dscore:: f_4(Base, Fit, Rbase, right2)
  113. ## genstat:: f_4(Base, Fit, right1, right2)
  114.  
  115. details: Paniya EHG -0.013803 -7.594984
  116. details: IVC_25AASI_50IranN EHG 0.002095 1.077161
  117. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo EHG 0.024924 12.086900
  118. dscore: EHG f4: 0.001962 Z: 1.106228
  119.  
  120. details: Paniya CHG -0.014088 -6.436052
  121. details: IVC_25AASI_50IranN CHG 0.007726 3.338727
  122. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo CHG 0.013771 5.639435
  123. dscore: CHG f4: 0.001519 Z: 0.725251
  124.  
  125. details: Paniya WSHG -0.010503 -4.969945
  126. details: IVC_25AASI_50IranN WSHG 0.005421 2.328231
  127. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo WSHG 0.018962 7.531635
  128. dscore: WSHG f4: 0.003066 Z: 1.475525
  129.  
  130. details: Paniya Onge.SG 0.015325 8.444949
  131. details: IVC_25AASI_50IranN Onge.SG -0.002431 -1.215058
  132. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo Onge.SG -0.008748 -4.092487
  133. dscore: Onge.SG f4: 0.002288 Z: 1.271732
  134.  
  135. details: Paniya Turkey_N -0.014810 -8.980699
  136. details: IVC_25AASI_50IranN Turkey_N 0.003706 2.147575
  137. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo Turkey_N 0.021762 11.819735
  138. dscore: Turkey_N f4: 0.001518 Z: 0.966924
  139.  
  140. details: Paniya Iraq_PPNA -0.015481 -6.106641
  141. details: IVC_25AASI_50IranN Iraq_PPNA 0.007399 2.659035
  142. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo Iraq_PPNA 0.014532 5.177977
  143. dscore: Iraq_PPNA f4: 0.001079 Z: 0.432584
  144.  
  145. details: Paniya Levant_PPN -0.012040 -5.359956
  146. details: IVC_25AASI_50IranN Levant_PPN 0.006179 2.480766
  147. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo Levant_PPN 0.019804 7.833308
  148. dscore: Levant_PPN f4: 0.003039 Z: 1.361868
  149.  
  150. details: Paniya CHN_Tarim_EMBA1 -0.009943 -4.930079
  151. details: IVC_25AASI_50IranN CHN_Tarim_EMBA1 0.002325 1.058440
  152. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo CHN_Tarim_EMBA1 0.012025 4.843102
  153. dscore: CHN_Tarim_EMBA1 f4: 0.000336 Z: 0.167121
  154.  
  155. details: Paniya Iran_GanjDareh_N -0.013249 -6.829722
  156. details: IVC_25AASI_50IranN Iran_GanjDareh_N 0.013871 6.701734
  157. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo Iran_GanjDareh_N 0.006268 2.883186
  158. dscore: Iran_GanjDareh_N f4: 0.002552 Z: 1.337499
  159.  
  160. details: Paniya Mongolia_North_N 0.011385 5.711747
  161. details: IVC_25AASI_50IranN Mongolia_North_N 0.000400 0.184338
  162. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo Mongolia_North_N -0.004978 -2.185939
  163. dscore: Mongolia_North_N f4: 0.002969 Z: 1.507334
  164.  
  165. details: Paniya Serbia_IronGates_Mesolithic -0.013578 -7.768138
  166. details: IVC_25AASI_50IranN Serbia_IronGates_Mesolithic -0.000409 -0.220368
  167. details: China_Xinjiang_Tangbalesayi_LBA_Andronovo Serbia_IronGates_Mesolithic 0.029686 14.552312
  168. dscore: Serbia_IronGates_Mesolithic f4: 0.002146 Z: 1.264054
  169.  
  170. gendstat: Mbuti.DG EHG 1.106
  171. gendstat: Mbuti.DG CHG 0.725
  172. gendstat: Mbuti.DG WSHG 1.476
  173. gendstat: Mbuti.DG Onge.SG 1.272
  174. gendstat: Mbuti.DG Turkey_N 0.967
  175. gendstat: Mbuti.DG Iraq_PPNA 0.433
  176. gendstat: Mbuti.DG Levant_PPN 1.362
  177. gendstat: Mbuti.DG CHN_Tarim_EMBA1 0.167
  178. gendstat: Mbuti.DG Iran_GanjDareh_N 1.337
  179. gendstat: Mbuti.DG Mongolia_North_N 1.507
  180. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 1.264
  181. gendstat: EHG CHG -0.239
  182. gendstat: EHG WSHG 0.708
  183. gendstat: EHG Onge.SG 0.190
  184. gendstat: EHG Turkey_N -0.357
  185. gendstat: EHG Iraq_PPNA -0.370
  186. gendstat: EHG Levant_PPN 0.541
  187. gendstat: EHG CHN_Tarim_EMBA1 -1.210
  188. gendstat: EHG Iran_GanjDareh_N 0.377
  189. gendstat: EHG Mongolia_North_N 0.610
  190. gendstat: EHG Serbia_IronGates_Mesolithic 0.176
  191. gendstat: CHG WSHG 0.707
  192. gendstat: CHG Onge.SG 0.367
  193. gendstat: CHG Turkey_N -0.001
  194. gendstat: CHG Iraq_PPNA -0.172
  195. gendstat: CHG Levant_PPN 0.676
  196. gendstat: CHG CHN_Tarim_EMBA1 -0.583
  197. gendstat: CHG Iran_GanjDareh_N 0.570
  198. gendstat: CHG Mongolia_North_N 0.693
  199. gendstat: CHG Serbia_IronGates_Mesolithic 0.353
  200. gendstat: WSHG Onge.SG -0.391
  201. gendstat: WSHG Turkey_N -0.885
  202. gendstat: WSHG Iraq_PPNA -0.768
  203. gendstat: WSHG Levant_PPN -0.011
  204. gendstat: WSHG CHN_Tarim_EMBA1 -1.707
  205. gendstat: WSHG Iran_GanjDareh_N -0.257
  206. gendstat: WSHG Mongolia_North_N -0.049
  207. gendstat: WSHG Serbia_IronGates_Mesolithic -0.562
  208. gendstat: Onge.SG Turkey_N -0.468
  209. gendstat: Onge.SG Iraq_PPNA -0.472
  210. gendstat: Onge.SG Levant_PPN 0.341
  211. gendstat: Onge.SG CHN_Tarim_EMBA1 -1.054
  212. gendstat: Onge.SG Iran_GanjDareh_N 0.146
  213. gendstat: Onge.SG Mongolia_North_N 0.432
  214. gendstat: Onge.SG Serbia_IronGates_Mesolithic -0.087
  215. gendstat: Turkey_N Iraq_PPNA -0.203
  216. gendstat: Turkey_N Levant_PPN 0.929
  217. gendstat: Turkey_N CHN_Tarim_EMBA1 -0.738
  218. gendstat: Turkey_N Iran_GanjDareh_N 0.742
  219. gendstat: Turkey_N Mongolia_North_N 0.869
  220. gendstat: Turkey_N Serbia_IronGates_Mesolithic 0.599
  221. gendstat: Iraq_PPNA Levant_PPN 0.717
  222. gendstat: Iraq_PPNA CHN_Tarim_EMBA1 -0.296
  223. gendstat: Iraq_PPNA Iran_GanjDareh_N 0.614
  224. gendstat: Iraq_PPNA Mongolia_North_N 0.729
  225. gendstat: Iraq_PPNA Serbia_IronGates_Mesolithic 0.459
  226. gendstat: Levant_PPN CHN_Tarim_EMBA1 -1.210
  227. gendstat: Levant_PPN Iran_GanjDareh_N -0.241
  228. gendstat: Levant_PPN Mongolia_North_N -0.031
  229. gendstat: Levant_PPN Serbia_IronGates_Mesolithic -0.482
  230. gendstat: CHN_Tarim_EMBA1 Iran_GanjDareh_N 1.213
  231. gendstat: CHN_Tarim_EMBA1 Mongolia_North_N 1.449
  232. gendstat: CHN_Tarim_EMBA1 Serbia_IronGates_Mesolithic 1.180
  233. gendstat: Iran_GanjDareh_N Mongolia_North_N 0.236
  234. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.267
  235. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic -0.506
  236.  
  237. removing /tmp/fsx.193
  238. ##end of qpAdm: 4.114 seconds cpu 1.016 Mbytes in use
Advertisement
Add Comment
Please, Sign In to add comment
Public Pastes
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!